Fast two-dimensional grid and transmission X-ray microscopy scanning methods for visualizing and characterizing protein crystals

Journal of Applied Crystallography

Volumn 49, Issue , 2016, Pages 944-952

  Wojdyla, Justyna Aleksandra ^a   Panepucci, Ezequiel ^a   Martiel, Isabelle ^a   Ebner, Simon ^a   Huang, Chia Ying ^b   Caffrey, Martin ^b   Bunk, Oliver ^a   Wang, Meitian ^a  

^a PAUL SCHERRER INSTITUTE   (Switzerland)

^b TRINITY COLLEGE DUBLIN   (Ireland)

Author keywords

Fast grid scans; Macromolecular crystallography; Oscillation images; Scanning transmission X ray microscopy; Visualization of protein crystals

Indexed keywords

BIOLOGICAL MEMBRANES; CRYSTALLOGRAPHY; DATA ACQUISITION; DIFFRACTION; ELECTRONS; FREE ELECTRON LASERS; LIGHT SOURCES; MACROMOLECULES; PARTICLE BEAMS; PHASE COMPARATORS; PROTEINS; SCANNING; SILICON DETECTORS; SILICON NITRIDE; X RAY MICROSCOPES;

GRID SCANS; MACROMOLECULAR CRYSTALLOGRAPHY; OSCILLATION IMAGES; PROTEIN CRYSTAL; SCANNING TRANSMISSION X RAY MICROSCOPY;

X RAY CRYSTALLOGRAPHY;

EID: 84973138033     PISSN: 00218898     EISSN: 16005767     Source Type: Journal    
DOI: 10.1107/S1600576716006233     Document Type: Article

References (36)

1. Aishima, J., Owen, R. L., Axford, D., Shepherd, E.,Winter, G., Levik, K., Gibbons, P., Ashton, A. & Evans, G. (2010). Acta Cryst. D66, 1032-1035.
2. Andersson, K. M. & Hovmöller, S. (1998). Z. Kristallgr. 213, 369-373.
3. Bowler, M. W., Guijarro, M., Petitdemange, S., Baker, I., Svensson, O., Burghammer, M., Mueller-Dieckmann, C., Gordon, E. J., Flot, D., McSweeney, S. M. & Leonard, G. A. (2010). Acta Cryst. D66, 855-864.
4. Brockhauser, S., Di Michiel, M., McGeehan, J. E., McCarthy, A. A. & Ravelli, R. B. G. (2008). J. Appl. Cryst. 41, 1057-1066.
5. Bunk, O., Bech, M., Jensen, T., Feidenhans'l, R., Binderup, T., Menzel, A. & Pfeiffer, F. (2009). New J. Phys. 11, 123016.
6. Caffrey, M., Li, D. & Dukkipati, A. (2012). Biochemistry, 51, 6266-6288.
7. Cherezov, V., Hanson, M., Griffith, M. T., Hilgart, M. C., Sanishvili, R., Nagarajan, V., Stepanov, S., Fischetti, R. F., Kuhn, P. & Stevens, R. C. (2009). J. R. Soc. Interface, 6, S587-S597.
8. Coulibaly, F., Chiu, E., Ikeda, K., Gutmann, S., Haebel, P.W., Schulze- Briese, C., Mori, H. & Metcalf, P. (2007). Nature, 446, 97-101.
9. Dinapoli, R., Bergamaschi, A., Henrich, B., Horisberger, R., Johnson, I., Mozzanica, A., Schmid, E., Schmitt, B., Schreiber, A., Shi, X. & Theidel, G. (2011). Nucl. Instrum. Methods Phys. Res. Sect. A, 650, 79-83.
10. Evans, G., Axford, D. & Owen, R. L. (2011). Acta Cryst. D67, 261-270.
11. Feld, G. K. et al. (2015). J. Appl. Cryst. 48, 1072-1079.
12. Fuchs, M. R. et al. (2014). J. Synchrotron Rad. 21, 340-351.
13. Haupert, L. M. & Simpson, G. J. (2011). Methods, 55, 379-386.
14. Henrich, B., Bergamaschi, A., Broennimann, C., Dinapoli, R., Eikenberry, E. F., Johnson, I., Kobas, M., Kraft, P., Mozzanica, A. & Schmitt, B. (2009). Nucl. Instrum. Methods Phys. Res. Sect. A, 607, 247-249.
15. Hilgart, M. C., Sanishvili, R., Ogata, C. M., Becker, M., Venugopalan, N., Stepanov, S., Makarov, O., Smith, J. L. & Fischetti, R. F. (2011). J. Synchrotron Rad. 18, 717-722.
16. Holton, J. M. (2009). J. Synchrotron Rad. 16, 133-142.
17. Holton, J. M. & Frankel, K. A. (2010). Acta Cryst. D66, 393-408.
18. Huang, C.-Y., Olieric, V., Ma, P., Howe, N., Vogeley, L., Liu, X., Warshamanage, R., Weinert, T., Panepucci, E., Kobilka, B., Diederichs, K., Wang, M. & Caffrey, M. (2016). Acta Cryst. D72, 93-112.
19. Huang, C.-Y., Olieric, V., Ma, P., Panepucci, E., Diederichs, K., Wang, M. & Caffrey, M. (2015). Acta Cryst. D71, 1238-1256.
20. Hunter, M. S. et al. (2014). Sci. Rep. 4, 6026.
21. Kissick, D. J., Gualtieri, E. J., Simpson, G. J. & Cherezov, V. (2010). Anal. Chem. 82, 491-497.
22. Madden, J. T. et al. (2013). J. Synchrotron Rad. 20, 531-540.
23. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
24. Menzel, A., Kewish, C. M., Kraft, P., Henrich, B., Jefimovs, K., Vila- Comamala, J., David, C., Dierolf, M., Thibault, P., Pfeiffer, F. & Bunk, O. (2010). Ultramicroscopy, 110, 1143-1147.
25. Quillin, M. L. & Matthews, B. W. (2000). Acta Cryst. D56, 791-794.
26. Schlichting, I. (2015). IUCrJ, 2, 246-255.
27. Smith, J. L., Fischetti, R. F. & Yamamoto, M. (2012). Curr. Opin. Struct. Biol. 22, 602-612.
28. Song, J., Mathew, D., Jacob, S. A., Corbett, L., Moorhead, P. & Soltis, S. M. (2007). J. Synchrotron Rad. 14, 191-195.
29. Svensson, O., Malbet-Monaco, S., Popov, A., Nurizzo, D. & Bowler, M. W. (2015). Acta Cryst. D71, 1757-1767.
30. Thibault, P., Dierolf, M., Kewish, C. M., Menzel, A., Bunk, O. & Pfeiffer, F. (2009). Phys. Rev. A, 80, 043813.
31. Thibault, P., Dierolf,M., Menzel, A., Bunk, O., David, C. & Pfeiffer, F. (2008). Science, 321, 379-382.
32. Tinti, G., Bergamaschi, A., Cartier, S., Dinapoli, R., Greiffenberg, D., Johnson, I., Jungmann-Smith, J. H., Mezza, D., Mozzanica, A., Schmitt, B. & Shi, X. (2015). J. Instrum. 10, C03011.
33. Warren, A. J., Armour, W., Axford, D., Basham, M., Connolley, T., Hall, D. R., Horrell, S., McAuley, K. E., Mykhaylyk, V., Wagner, A. & Evans, G. (2013). Acta Cryst. D69, 1252-1259.
34. Weierstall, U. (2014). Philos. Trans. R. Soc. London Ser. B Biol. Sci. 369, 20130337.
35. White, E. T., Tan, W. H., Ang, J. M., Tait, S. & Litster, J. D. (2007). Powder Technol. 179, 55-58.
36. Zhang, Z., Sauter, N. K., van den Bedem, H., Snell, G. & Deacon, A. M. (2006). J. Appl. Cryst. 39, 112-119.