Fully automatic characterization and data collection from crystals of biological macromolecules

Acta Crystallographica Section D: Biological Crystallography

Volumn 71, Issue , 2015, Pages 1757-1767

  Svensson, Olof ^a   Malbet Monaco, Stéphanie ^a   Popov, Alexander ^a   Nurizzo, Didier ^a   Bowler, Matthew W ^b,c  

^a EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (France)

^c UNIV GRENOBLE ALPES   (France)

Author keywords

Automation; Macromolecular crystallography; Synchrotron instrumentation; X ray crystal centring

Indexed keywords

MACROMOLECULE;

ALGORITHM; CHEMISTRY; ECONOMICS; IMAGE PROCESSING; MACROMOLECULE; PROCEDURES; X RAY CRYSTALLOGRAPHY;

ALGORITHMS; CRYSTALLOGRAPHY, X-RAY; IMAGE PROCESSING, COMPUTER-ASSISTED; MACROMOLECULAR SUBSTANCES;

EID: 84938887595     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S1399004715011918     Document Type: Article

References (47)

1. Aishima, J., Owen, R. L., Axford, D., Shepherd, E.,Winter, G., Levik, K., Gibbons, P., Ashton, A. & Evans, G. (2010). Acta Cryst. D66, 1032-1035.
2. Arzt, S. et al. (2005). Prog. Biophys. Mol. Biol. 89, 124-152.
3. Bedem, H. van den, Wolf, G., Xu, Q. & Deacon, A. M. (2011). Acta Cryst. D67, 368-375.
4. Ben-Shem, A., Frolow, F. & Nelson, N. (2003). Nature (London), 426, 630-635.
5. Ben-Shem, A., Jenner, L., Yusupova, G. & Yusupov, M. (2010). Science, 330, 1203-1209.
6. Berman, H. M., Coimbatore Narayanan, B., Costanzo, L. D., Dutta, S., Ghosh, S., Hudson, B. P., Lawson, C. L., Peisach, E., Prlic, A., Rose, P. W., Shao, C., Yang, H., Young, J. & Zardecki, C. (2013). FEBS Lett 587, 1036-1045.
7. Beteva, A. et al. (2006). Acta Cryst. D62, 1162-1169.
8. Bourenkov, G. P. & Popov, A. N. (2010). Acta Cryst. D66, 409-419.
9. Bowler, M. G. & Bowler, M. W. (2014). Acta Cryst. F70, 127-132.
10. Bowler, M. W., Guijarro, M., Petitdemange, S., Baker, I., Svensson, O., Burghammer, M., Mueller-Dieckmann, C., Gordon, E. J., Flot, D., McSweeney, S. M. & Leonard, G. A. (2010). Acta Cryst. D66, 855-864.
11. Brockhauser, S., Svensson, O., Bowler, M. W., Nanao, M., Gordon, E., Leal, R. M. F., Popov, A., Gerring, M., McCarthy, A. A. & Gotz, A. (2012). Acta Cryst. D68, 975-984.
12. Cherezov, V., Hanson, M. A., Griffith, M. T., Hilgart, M. C., Sanishvili, R., Nagarajan, V., Stepanov, S., Fischetti, R. F., Kuhn, P. & Stevens, R. C. (2009). J. R. Soc. Interface, 6, S587-S597.
13. Cipriani, F. et al. (2006). Acta Cryst. D62, 1251-1259.
14. Cipriani, F., Rö wer, M., Landret, C., Zander, U., Felisaz, F. & Márquez, J. A. (2012). Acta Cryst. D68, 1393-1399.
15. Cohen, A. E., Ellis, P. J., Miller, M. D., Deacon, A. M. & Phizackerley, R. P. (2002). J. Appl. Cryst. 35, 720-726.
16. Dauter, Z. (1999). Acta Cryst. D55, 1703-1717.
17. Delagenière, S. et al. (2011). Bioinformatics, 27, 3186-3192.
18. Deller, M. C. & Rupp, B. (2014). Acta Cryst. F70, 133-155.
19. Elsliger, M.-A., Deacon, A. M., Godzik, A., Lesley, S. A., Wooley, J., Wü thrich, K. & Wilson, I. A. (2010). Acta Cryst. F66, 1137-1142.
20. Ferrer, J.-L., Larive, N. A., Bowler, M. W. & Nurizzo, D. (2013). Exp. Opin. Drug. Discov. 8, 835-847.
21. Gabadinho, J. et al. (2010). J. Synchrotron Rad. 17, 700-707.
22. Heikkila, T., Surade, S., Silvestre, H., Dias, M. B., Ciulli, A., Bromfield, K., Scott, D., Howard, N., Wen, S., Wei, A., Osborne, D., Abell, C. & Blundell, T. (2009). From Molecules to Medicines: Structure of Biological Macromolecules and Its Relevance in Combating New Diseases and Bioterrorism, edited by J. Sussman & P. Spadon, pp. 21-36. Dordrecht: Springer.
23. Heinemann, U., Bü ssow, K., Mueller, U. & Umbach, P. (2003). Acc. Chem. Res. 36, 157-163.
24. Hilgart, M. C., Sanishvili, R., Ogata, C. M., Becker, M., Venugopalan, N., Stepanov, S., Makarov, O., Smith, J. L. & Fischetti, R. F. (2011). J. Synchrotron Rad. 18, 717-722.
25. Holton, J. & Alber, T. (2004). Proc. Natl Acad. Sci. USA, 101, 1537-1542.
26. Holton, J. M. & Frankel, K. A. (2010). Acta Cryst. D66, 393-408.
27. Incardona, M.-F., Bourenkov, G. P., Levik, K., Pieritz, R. A., Popov, A. N. & Svensson, O. (2009). J. Synchrotron Rad. 16, 872-879.
28. Jacquamet, L., Joly, J., Bertoni, A., Charrault, P., Pirocchi, M., Vernede, X., Bouis, F., Borel, F., Périn, J.-P., Denis, T., Rechatin, J.-L. & Ferrer, J.-L. (2009). J. Synchrotron Rad. 16, 14-21.
29. Kabsch, W. (2010). Acta Cryst. D66, 125-132.
30. Leslie, A. G. W. (2006). Acta Cryst. D62, 48-57.
31. Malbet-Monaco, S., Leonard, G. A., Mitchell, E. P. & Gordon, E. J. (2013). Acta Cryst. D69, 1289-1296.
32. Monaco, S., Gordon, E., Bowler, M. W., Delagenière, S., Guijarro, M., Spruce, D., Svensson, O., McSweeney, S. M., McCarthy, A. A., Leonard, G. & Nanao, M. H. (2013). J. Appl. Cryst. 46, 804-810.
33. Ohana, J., Jacquamet, L., Joly, J., Bertoni, A., Taunier, P., Michel, L., Charrault, P., Pirocchi, M., Carpentier, P., Borel, F., Kahn, R. & Ferrer, J.-L. (2004). J. Appl. Cryst. 37, 72-77.
34. Okazaki, N., Hasegawa, K., Ueno, G., Murakami, H., Kumasaka, T. & Yamamoto, M. (2008). J. Synchrotron Rad. 15, 288-291.
35. Paithankar, K. S., Owen, R. L. & Garman, E. F. (2009). J. Synchrotron Rad. 16, 152-162.
36. Panjikar, S., Parthasarathy, V., Lamzin, V. S.,Weiss, M. S. & Tucker, P. A. (2005). Acta Cryst. D61, 449-457.
37. Perrakis, A., Morris, R. & Lamzin, V. S. (1999). Nature Struct. Biol. 6, 458-463.
38. Pohl, E., Ristau, U., Gehrmann, T., Jahn, D., Robrahn, B., Malthan, D., Dobler, H. & Hermes, C. (2004). J. Synchrotron Rad. 11, 372-377.
39. Robinson, H., Soares, A. S., Becker, M., Sweet, R. & Héroux, A. (2006). Acta Cryst. D62, 1336-1339.
40. Sauter, N. K., Grosse-Kunstleve, R. W. & Adams, P. D. (2004). J. Appl. Cryst. 37, 399-409.
41. Selmer,M., Dunham, C. M.,Murphy, F. V.,Weixlbaumer, A., Petry, S., Kelley, A. C., Weir, J. R. & Ramakrishnan, V. (2006). Science, 313, 1935-1942.
42. Soltis, S. M. et al. (2008). Acta Cryst. D64, 1210-1221.
43. Tsai, Y., McPhillips, S. E., González, A., McPhillips, T. M., Zinn, D., Cohen, A. E., Feese, M. D., Bushnell, D., Tiefenbrunn, T., Stout, C. D., Ludaescher, B., Hedman, B., Hodgson, K. O. & Soltis, S. M. (2013). Acta Cryst. D69, 796-803.
44. Ueno, G., Hirose, R., Ida, K., Kumasaka, T. & Yamamoto, M. (2004). J. Appl. Cryst. 37, 867-873.
45. Warne, T., Serrano-Vega, M. J., Baker, J. G., Moukhametzianov, R., Edwards, P. C., Henderson, R., Leslie, A. G. W., Tate, C. G. & Schertler, G. F. (2008). Nature (London), 454, 486-491.
46. Wasserman, S. R., Koss, J. W., Sojitra, S. T., Morisco, L. L. & Burley, S. K. (2012). Trends Pharmacol. Sci. 33, 261-267.
47. Zouni, A.,Witt, H. T., Kern, J., Fromme, P., Krauss, N., Saenger,W. & Orth, P. (2001). Nature (London), 409, 739-743.