Automated sample-scanning methods for radiation damage mitigation and diffraction-based centering of macromolecular crystals

Journal of Synchrotron Radiation

Volumn 18, Issue 5, 2011, Pages 717-722

  Hilgart, Mark C ^a   Sanishvili, Ruslan ^a   Ogata, Craig M ^a   Becker, Michael ^a   Venugopalan, Nagarajan ^a   Stepanov, Sergey ^a   Makarov, Oleg ^a   Smith, Janet L ^b   Fischetti, Robert F ^a  

^a ARGONNE NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

beamline automation; crystal centering; data acquisition; high throughput crystallography; macromolecular crystallography; radiation damage; rastering

Indexed keywords

ADVANCED PHOTON SOURCE; AUTOMATED SCANNING; BEAMLINE AUTOMATION; CRYSTAL VOLUME; DATA ACQUISITION SOFTWARES; DATA COLLECTION; DIFFRACTION IMAGES; HIGH-THROUGHPUT CRYSTALLOGRAPHY; LOW DOSE; MACROMOLECULAR CRYSTALLOGRAPHY; MACROMOLECULAR CRYSTALS; MEDICAL SCIENCE; NATIONAL CANCER INSTITUTE; POLYGONAL SHAPES; QUALITY RANKING; RASTERING; REAL TIME; SMALL SIZE; STRUCTURAL BIOLOGY; THREE-DIMENSIONAL VECTORS;

AUTOMATION; CRYSTALLOGRAPHY; CRYSTALS; DATA ACQUISITION; DIFFRACTION; MACROMOLECULES; MINERALOGY; RADIATION DAMAGE; SCANNING;

THREE DIMENSIONAL;

ALGORITHM; ARTICLE; CHEMISTRY; COMPUTER PROGRAM; LABORATORY AUTOMATION; MACROMOLECULE; METHODOLOGY; RADIATION EXPOSURE; SYNCHROTRON; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

ALGORITHMS; AUTOMATION, LABORATORY; CRYSTALLOGRAPHY, X-RAY; MACROMOLECULAR SUBSTANCES; SOFTWARE; SYNCHROTRONS; X-RAY DIFFRACTION;

EID: 80052178606     PISSN: 09090495     EISSN: 16005775     Source Type: Journal    
DOI: 10.1107/S0909049511029918     Document Type: Article

References (28)

1. Aishima, J., Owen, R. L., Axford, D., Shepherd, E.,Winter, G., Levik, K., Gibbons, P., Ashton, A. & Evans, G. (2010). Acta Cryst. D66, 1032-1035.
2. Bokoch, M. P., Zou, Y., Rasmussen, S. G., Liu, C. W., Nygaard, R., Rosenbaum, D. M., Fung, J. J., Choi, H. J., Thian, F. S., Kobilka, T. S., Puglisi, J. D., Weis, W. I., Pardo, L., Prosser, R. S., Mueller, L. & Kobilka, B. K. (2010). Nature (London), 463, 108-112.
3. Bowler, M. W., Guijarro, M., Petitdemange, S., Baker, I., Svensson, O., Burghammer, M., Mueller-Dieckmann, C., Gordon, E. J., Flot, D., McSweeney, S. M. & Leonard, G. A. (2010). Acta Cryst. D66, 855-864.
4. Caffrey, M. & Cherezov, V. (2009). Nat. Protocols, 4, 706-731.
5. Cherezov, V., Hanson, M. A., Griffith, M. T., Hilgart, M. C., Sanishvili, R., Nagarajan, V., Stepanov, S., Fischetti, R. F., Kuhn, P. & Stevens, R. C. (2009). J. R. Soc. Interface, 6, S587-S597.
6. Cherezov, V., Rosenbaum, D. M., Hanson, M. A., Rasmussen, S. G., Thian, F. S., Kobilka, T. S., Choi, H. J., Kuhn, P.,Weis,W. I., Kobilka, B. K. & Stevens, R. C. (2007). Science, 318, 1258-1265.
7. Chien, E. Y., Liu, W., Zhao, Q., Katritch, V., Han, G. W., Hanson, M. A., Shi, L., Newman, A. H., Javitch, J. A., Cherezov, V. & Stevens, R. C. (2010). Science, 330, 1091-1095.
8. Fischetti, R. F., Xu, S., Yoder, D. W., Becker, M., Nagarajan, V., Sanishvili, R., Hilgart, M. C., Stepanov, S., Makarov, O. & Smith, J. L. (2009). J. Synchrotron Rad. 16, 217-225.
9. Fischetti, R. F., Yoder, D. W., Xu, S., Stepanov, S., Makarov, O., Benn, R., Corcoran, S., Diete, W., Schwoerer-Boehing, M., Signorato, R., Schroeder, L., Berman, L., Viccaro, P. J. & Smith, J. L. (2007). Synchrotron Radiation Instrumentation: Ninth International Conference on Synchrotron Radiation Instrumentation, edited by J.-Y. Choi and S. Rah, pp. 754-757. New York: American Institute of Physics.
10. Flot, D., Mairs, T., Giraud, T., Guijarro, M., Lesourd, M., Rey, V., van Brussel, D., Morawe, C., Borel, C., Hignette, O., Chavanne, J., Nurizzo, D., McSweeney, S. & Mitchell, E. (2010). J. Synchrotron Rad. 17, 107-118.
11. Gabadinho, J., Beteva, A., Guijarro, M., Rey-Bakaikoa, V., Spruce, D., Bowler, M. W., Brockhauser, S., Flot, D., Gordon, E. J., Hall, D. R., Lavault, B., McCarthy, A. A., McCarthy, J., Mitchell, E., Monaco, S., Mueller-Dieckmann, C., Nurizzo, D., Ravelli, R. B. G., Thibault, X., Walsh, M. A., Leonard, G. A. & McSweeney, S. M. (2010). J. Synchrotron Rad. 17, 700-707.
12. Gehret, J. J., Gu, L., Gerwick, W. H., Wipf, P., Sherman, D. H. & Smith, J. L. (2011). J. Biol. Chem. 286, 14445-14454.
13. Hanson, M. A., Cherezov, V., Griffith, M. T., Roth, C. B., Jaakola, V. P., Chien, E. Y., Velasquez, J., Kuhn, P. & Stevens, R. C. (2008). Structure, 16, 897-905.
14. Jaakola, V. P., Griffith, M. T., Hanson, M. A., Cherezov, V., Chien, E. Y., Lane, J. R., Ijzerman, A. P. & Stevens, R. C. (2008). Science, 322, 1211-1217.
15. Jensen, L. M., Sanishvili, R., Davidson, V. L. & Wilmot, C. M. (2010). Science, 327, 1392-1394.
16. Leonard, T. A., Róžycki, B., Saidi, L. F., Hummer, G. & Hurley, J. H. (2011). Cell, 144, 55-66.
17. McPhillips, T. M.,McPhillips, S. E., Chiu, H.-J., Cohen, A. E., Deacon, A. M., Ellis, P. J., Garman, E., Gonzalez, A., Sauter, N. K., Phizackerley, R. P., Soltis, S. M. & Kuhn, P. (2002). J. Synchrotron Rad. 9, 401-406.
18. Rasmussen, S. G., Choi, H. J., Fung, J. J., Pardon, E., Casarosa, P., Chae, P. S., Devree, B. T., Rosenbaum, D. M., Thian, F. S., Kobilka, T. S., Schnapp, A., Konetzki, I., Sunahara, R. K., Gellman, S. H., Pautsch, A., Steyaert, J.,Weis,W. I. & Kobilka, B. K. (2011). Nature (London), 469, 175-180.
19. Rasmussen, S. G., Choi, H. J., Rosenbaum, D. M., Kobilka, T. S., Thian, F. S., Edwards, P. C., Burghammer, M., Ratnala, V. R., Sanishvili, R., Fischetti, R. F., Schertler, G. F.,Weis,W. I. & Kobilka, B. K. (2007). Nature (London), 450, 383-387.
20. Rosenbaum, D. M., Cherezov, V., Hanson, M. A., Rasmussen, S. G., Thian, F. S., Kobilka, T. S., Choi, H. J., Yao, X. J., Weis, W. I., Stevens, R. C. & Kobilka, B. K. (2007). Science, 318, 1266-1273.
21. Rosenbaum, D. M., Zhang, C., Lyons, J. A., Holl, R., Aragao, D., Arlow, D. H., Rasmussen, S. G., Choi, H. J., Devree, B. T., Sunahara, R. K., Chae, P. S., Gellman, S. H., Dror, R. O., Shaw, D. E., Weis, W. I., Caffrey, M., Gmeiner, P. & Kobilka, B. K. (2011). Nature (London), 469, 236-240.
22. Sanishvili, R., Nagarajan, V., Yoder, D., Becker, M., Xu, S., Corcoran, S., Akey, D. L., Smith, J. L. & Fischetti, R. F. (2008). Acta Cryst. D64, 425-435.
23. Sanishvili, R., Yoder, D. W., Pothineni, S. B., Rosenbaum, G., Xu, S., Vogt, S., Stepanov, S., Makarov, O. A., Corcoran, S., Benn, R., Nagarajan, V., Smith, J. L. & Fischetti, R. F. (2011). Proc. Natl Acad. Sci. USA, 108, 6127-6132.
24. Song, J., Mathew, D., Jacob, S. A., Corbett, L., Moorhead, P. & Soltis, S. M. (2007). J. Synchrotron Rad. 14, 191-195.
25. Stepanov, S., Makarov, O., Hilgart, M., Pothineni, S. B., Urakhchin, A., Devarapalli, S., Yoder, D., Becker, M., Ogata, C., Sanishvili, R., Venugopalan, N., Smith, J. L. & Fischetti, R. F. (2011). Acta Cryst. D67, 176-188.
26. Wu, B., Chien, E. Y., Mol, C. D., Fenalti, G., Liu, W., Katritch, V., Abagyan, R., Brooun, A., Wells, P., Bi, F. C., Hamel, D. J., Kuhn, P., Handel, T. M., Cherezov, V. & Stevens, R. C. (2010). Science, 330, 1066-1071.
27. Xu, F., Wu, H., Katritch, V., Han, G. W., Jacobson, K. A., Gao, Z. G., Cherezov, V. & Stevens, R. C. (2011). Science, 332, 322-327.
28. Zhang, Z., Sauter, N. K., van den Bedem, H., Snell, G. & Deacon, A. M. (2006). J. Appl. Cryst. 39, 112-119.