메뉴 건너뛰기




Volumn 18, Issue 5, 2016, Pages 611-624

Local genome topology can exhibit an incompletely rewired 3D-folding state during somatic cell reprogramming

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR CTCF; CCCTC-BINDING FACTOR; CHROMATIN; PROTEIN BINDING; REPRESSOR PROTEIN;

EID: 84967262787     PISSN: 19345909     EISSN: 18759777     Source Type: Journal    
DOI: 10.1016/j.stem.2016.04.004     Document Type: Article
Times cited : (99)

References (43)
  • 2
    • 0034713375 scopus 로고    scopus 로고
    • Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
    • A.C. Bell, and G. Felsenfeld Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene Nature 405 2000 482 485
    • (2000) Nature , vol.405 , pp. 482-485
    • Bell, A.C.1    Felsenfeld, G.2
  • 7
    • 84878011578 scopus 로고    scopus 로고
    • Exploring the three-dimensional organization of genomes: Interpreting chromatin interaction data
    • J. Dekker, M.A. Marti-Renom, and L.A. Mirny Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data Nat. Rev. Genet. 14 2013 390 403
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 390-403
    • Dekker, J.1    Marti-Renom, M.A.2    Mirny, L.A.3
  • 8
    • 85027929606 scopus 로고    scopus 로고
    • Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization
    • M. Denholtz, G. Bonora, C. Chronis, E. Splinter, W. de Laat, J. Ernst, M. Pellegrini, and K. Plath Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization Cell Stem Cell 13 2013 602 616
    • (2013) Cell Stem Cell , vol.13 , pp. 602-616
    • Denholtz, M.1    Bonora, G.2    Chronis, C.3    Splinter, E.4    De Laat, W.5    Ernst, J.6    Pellegrini, M.7    Plath, K.8
  • 9
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • J.R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M. Hu, J.S. Liu, and B. Ren Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 2012 376 380
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 12
    • 55049122748 scopus 로고    scopus 로고
    • Reprogramming of neural progenitor cells into induced pluripotent stem cells in the absence of exogenous Sox2 expression
    • S. Eminli, J. Utikal, K. Arnold, R. Jaenisch, and K. Hochedlinger Reprogramming of neural progenitor cells into induced pluripotent stem cells in the absence of exogenous Sox2 expression Stem Cells 26 2008 2467 2474
    • (2008) Stem Cells , vol.26 , pp. 2467-2474
    • Eminli, S.1    Utikal, J.2    Arnold, K.3    Jaenisch, R.4    Hochedlinger, K.5
  • 13
    • 84884164554 scopus 로고    scopus 로고
    • FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency
    • G. Ficz, T.A. Hore, F. Santos, H.J. Lee, W. Dean, J. Arand, F. Krueger, D. Oxley, Y.L. Paul, J. Walter, and et al. FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency Cell Stem Cell 13 2013 351 359
    • (2013) Cell Stem Cell , vol.13 , pp. 351-359
    • Ficz, G.1    Hore, T.A.2    Santos, F.3    Lee, H.J.4    Dean, W.5    Arand, J.6    Krueger, F.7    Oxley, D.8    Paul, Y.L.9    Walter, J.10
  • 24
    • 84930224978 scopus 로고    scopus 로고
    • Early reprogramming regulators identified by prospective isolation and mass cytometry
    • E. Lujan, E.R. Zunder, Y.H. Ng, I.N. Goronzy, G.P. Nolan, and M. Wernig Early reprogramming regulators identified by prospective isolation and mass cytometry Nature 521 2015 352 356
    • (2015) Nature , vol.521 , pp. 352-356
    • Lujan, E.1    Zunder, E.R.2    Ng, Y.H.3    Goronzy, I.N.4    Nolan, G.P.5    Wernig, M.6
  • 34
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • A. Sanyal, B.R. Lajoie, G. Jain, and J. Dekker The long-range interaction landscape of gene promoters Nature 489 2012 109 113
    • (2012) Nature , vol.489 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 35
    • 84870058502 scopus 로고    scopus 로고
    • Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome
    • A. Soufi, G. Donahue, and K.S. Zaret Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome Cell 151 2012 994 1004
    • (2012) Cell , vol.151 , pp. 994-1004
    • Soufi, A.1    Donahue, G.2    Zaret, K.S.3
  • 36
    • 39149115929 scopus 로고    scopus 로고
    • Defining molecular cornerstones during fibroblast to iPS cell reprogramming in mouse
    • M. Stadtfeld, N. Maherali, D.T. Breault, and K. Hochedlinger Defining molecular cornerstones during fibroblast to iPS cell reprogramming in mouse Cell Stem Cell 2 2008 230 240
    • (2008) Cell Stem Cell , vol.2 , pp. 230-240
    • Stadtfeld, M.1    Maherali, N.2    Breault, D.T.3    Hochedlinger, K.4
  • 38
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • K. Takahashi, and S. Yamanaka Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors Cell 126 2006 663 676
    • (2006) Cell , vol.126 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 39
    • 84880651864 scopus 로고    scopus 로고
    • Maturation, not initiation, is the major roadblock during reprogramming toward pluripotency from human fibroblasts
    • K. Tanabe, M. Nakamura, M. Narita, K. Takahashi, and S. Yamanaka Maturation, not initiation, is the major roadblock during reprogramming toward pluripotency from human fibroblasts Proc. Natl. Acad. Sci. USA 110 2013 12172 12179
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 12172-12179
    • Tanabe, K.1    Nakamura, M.2    Narita, M.3    Takahashi, K.4    Yamanaka, S.5
  • 40
    • 84887835943 scopus 로고    scopus 로고
    • Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency
    • Z. Wei, F. Gao, S. Kim, H. Yang, J. Lyu, W. An, K. Wang, and W. Lu Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency Cell Stem Cell 13 2013 36 47
    • (2013) Cell Stem Cell , vol.13 , pp. 36-47
    • Wei, Z.1    Gao, F.2    Kim, S.3    Yang, H.4    Lyu, J.5    An, W.6    Wang, K.7    Lu, W.8
  • 42
    • 84893155560 scopus 로고    scopus 로고
    • Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming
    • H. Zhang, W. Jiao, L. Sun, J. Fan, M. Chen, H. Wang, X. Xu, A. Shen, T. Li, B. Niu, and et al. Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming Cell Stem Cell 13 2013 30 35
    • (2013) Cell Stem Cell , vol.13 , pp. 30-35
    • Zhang, H.1    Jiao, W.2    Sun, L.3    Fan, J.4    Chen, M.5    Wang, H.6    Xu, X.7    Shen, A.8    Li, T.9    Niu, B.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.