-
1
-
-
84929661801
-
Advances and applications of single-cell sequencing technologies
-
[CrossRef] [PubMed]
-
Wang, Y.; Navin, N.E. Advances and applications of single-cell sequencing technologies. Mol. Cell 2015, 58, 598-609. [CrossRef] [PubMed]
-
(2015)
Mol. Cell
, vol.58
, pp. 598-609
-
-
Wang, Y.1
Navin, N.E.2
-
2
-
-
84929687805
-
The technology and biology of single-cell RNA sequencing
-
[CrossRef] [PubMed]
-
Kolodziejczyk, A.A.; Kim, J.K.; Svensson, V.; Marioni, J.C.; Teichmann, S.A. The technology and biology of single-cell RNA sequencing. Mol. Cell 2015, 58, 610-620. [CrossRef] [PubMed]
-
(2015)
Mol. Cell
, vol.58
, pp. 610-620
-
-
Kolodziejczyk, A.A.1
Kim, J.K.2
Svensson, V.3
Marioni, J.C.4
Teichmann, S.A.5
-
3
-
-
84946226911
-
Design and Analysis of Single-Cell Sequencing Experiments
-
[CrossRef] [PubMed]
-
Grun, D.; van Oudenaarden, A. Design and Analysis of Single-Cell Sequencing Experiments. Cell 2015, 163, 799-810. [CrossRef] [PubMed]
-
(2015)
Cell
, vol.163
, pp. 799-810
-
-
Grun, D.1
Van Oudenaarden, A.2
-
4
-
-
79953766940
-
Tumour evolution inferred by single-cell sequencing
-
[CrossRef] [PubMed]
-
Navin, N.; Kendall, J.; Troge, J.; Andrews, P.; Rodgers, L.; McIndoo, J.; Cook, K.; Stepansky, A.; Levy, D.; Esposito, D., et al. Tumour evolution inferred by single-cell sequencing. Nature 2011, 472, 90-94. [CrossRef] [PubMed]
-
(2011)
Nature
, vol.472
, pp. 90-94
-
-
Navin, N.1
Kendall, J.2
Troge, J.3
Andrews, P.4
Rodgers, L.5
McIndoo, J.6
Cook, K.7
Stepansky, A.8
Levy, D.9
Esposito, D.10
-
5
-
-
84863697677
-
From single cells to deep phenotypes in cancer
-
[CrossRef] [PubMed]
-
Bendall, S.C.; Nolan, G.P. From single cells to deep phenotypes in cancer. Nat. Biotechnol. 2012, 30, 639-647. [CrossRef] [PubMed]
-
(2012)
Nat. Biotechnol
, vol.30
, pp. 639-647
-
-
Bendall, S.C.1
Nolan, G.P.2
-
6
-
-
84921301669
-
Unraveling cell populations in tumors by single-cell mass cytometry
-
[CrossRef] [PubMed]
-
Di Palma, S.; Bodenmiller, B. Unraveling cell populations in tumors by single-cell mass cytometry. Curr. Opin. Biotechnol. 2015, 31, 122-129. [CrossRef] [PubMed]
-
(2015)
Curr. Opin. Biotechnol
, vol.31
, pp. 122-129
-
-
Di Palma, S.1
Bodenmiller, B.2
-
7
-
-
84998865518
-
Novel technologies and emerging biomarkers for personalized cancer immunotherapy
-
[CrossRef] [PubMed]
-
Yuan, J.; Hegde, P.S.; Clynes, R.; Foukas, P.G.; Harari, A.; Kleen, T.O.; Kvistborg, P.; Maccalli, C.; Maecker, H.T.; Page, D.B., et al. Novel technologies and emerging biomarkers for personalized cancer immunotherapy. J. Immunother. Cancer 2016, 4, 1-25. [CrossRef] [PubMed]
-
(2016)
J. Immunother. Cancer
, vol.4
, pp. 1-25
-
-
Yuan, J.1
Hegde, P.S.2
Clynes, R.3
Foukas, P.G.4
Harari, A.5
Kleen, T.O.6
Kvistborg, P.7
Maccalli, C.8
Maecker, H.T.9
Page, D.B.10
-
8
-
-
84941050406
-
From mass cytometry to cancer prognosis
-
[CrossRef] [PubMed]
-
Winter, D.R.; Ledergor, G.; Amit, I. From mass cytometry to cancer prognosis. Nat. Biotechnol. 2015, 33, 931-932. [CrossRef] [PubMed]
-
(2015)
Nat. Biotechnol
, vol.33
, pp. 931-932
-
-
Winter, D.R.1
Ledergor, G.2
Amit, I.3
-
9
-
-
84880280631
-
ViSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
-
[CrossRef] [PubMed]
-
Amir-El, A.D.; Davis, K.L.; Tadmor, M.D.; Simonds, E.F.; Levine, J.H.; Bendall, S.C.; Shenfeld, D.K.; Krishnaswamy, S.; Nolan, G.P.; Pe’er, D. viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia. Nat. Biotechnol. 2013, 31, 545-552. [CrossRef] [PubMed]
-
(2013)
Nat. Biotechnol
, vol.31
, pp. 545-552
-
-
Amir-El, A.D.1
Davis, K.L.2
Tadmor, M.D.3
Simonds, E.F.4
Levine, J.H.5
Bendall, S.C.6
Shenfeld, D.K.7
Krishnaswamy, S.8
Nolan, G.P.9
Pe’Er, D.10
-
10
-
-
84887315590
-
Mosaic copy number variation in human neurons
-
[CrossRef] [PubMed]
-
McConnell, M.J.; Lindberg, M.R.; Brennand, K.J.; Piper, J.C.; Voet, T.; Cowing-Zitron, C.; Shumilina, S.; Lasken, R.S.; Vermeesch, J.R.; Hall, I.M., et al. Mosaic copy number variation in human neurons. Science 2013, 342, 632-637. [CrossRef] [PubMed]
-
(2013)
Science
, vol.342
, pp. 632-637
-
-
McConnell, M.J.1
Lindberg, M.R.2
Brennand, K.J.3
Piper, J.C.4
Voet, T.5
Cowing-Zitron, C.6
Shumilina, S.7
Lasken, R.S.8
Vermeesch, J.R.9
Hall, I.M.10
-
11
-
-
70349466529
-
Population context determines cell-to-cell variability in endocytosis and virus infection
-
[CrossRef] [PubMed]
-
Snijder, B.; Sacher, R.; Ramo, P.; Damm, E.M.; Liberali, P.; Pelkmans, L. Population context determines cell-to-cell variability in endocytosis and virus infection. Nature 2009, 461, 520-523. [CrossRef] [PubMed]
-
(2009)
Nature
, vol.461
, pp. 520-523
-
-
Snijder, B.1
Sacher, R.2
Ramo, P.3
Damm, E.M.4
Liberali, P.5
Pelkmans, L.6
-
12
-
-
84878258655
-
The transcriptional landscape of alphabeta T cell differentiation
-
[CrossRef] [PubMed]
-
Mingueneau, M.; Kreslavsky, T.; Gray, D.; Heng, T.; Cruse, R.; Ericson, J.; Bendall, S.; Spitzer, M.H.; Nolan, G.P.; Kobayashi, K., et al. The transcriptional landscape of alphabeta T cell differentiation. Nat. Immunol. 2013, 14, 619-632. [CrossRef] [PubMed]
-
(2013)
Nat. Immunol
, vol.14
, pp. 619-632
-
-
Mingueneau, M.1
Kreslavsky, T.2
Gray, D.3
Heng, T.4
Cruse, R.5
Ericson, J.6
Bendall, S.7
Spitzer, M.H.8
Nolan, G.P.9
Kobayashi, K.10
-
13
-
-
84904886001
-
Transcriptional establishment of cell-type identity: Dynamics and causal mechanisms of T-cell lineage commitment
-
[CrossRef] [PubMed]
-
Rothenberg, E.V.; Champhekar, A.; Damle, S.; Del Real, M.M.; Kueh, H.Y.; Li, L.; Yui, M.A. Transcriptional establishment of cell-type identity: Dynamics and causal mechanisms of T-cell lineage commitment. Cold Spring Harb. Symp. Quant. Biol. 2013, 78, 31-41. [CrossRef] [PubMed]
-
(2013)
Cold Spring Harb. Symp. Quant. Biol
, vol.78
, pp. 31-41
-
-
Rothenberg, E.V.1
Champhekar, A.2
Damle, S.3
Del Real, M.M.4
Kueh, H.Y.5
Li, L.6
Yui, M.A.7
-
14
-
-
84927655606
-
Transcriptional regulation of innate and adaptive lymphocyte lineages
-
[CrossRef] [PubMed]
-
De Obaldia, M.E.; Bhandoola, A. Transcriptional regulation of innate and adaptive lymphocyte lineages. Annu. Rev. Immunol. 2015, 33, 607-642. [CrossRef] [PubMed]
-
(2015)
Annu. Rev. Immunol.
, vol.33
, pp. 607-642
-
-
De Obaldia, M.E.1
Bhandoola, A.2
-
15
-
-
84951007347
-
Forging T-Lymphocyte Identity: Intersecting Networks of Transcriptional Control
-
[PubMed]
-
Rothenberg, E.V.; Ungerback, J.; Champhekar, A. Forging T-Lymphocyte Identity: Intersecting Networks of Transcriptional Control. Adv. Immunol. 2016, 129, 109-174. [PubMed]
-
(2016)
Adv. Immunol
, vol.129
, pp. 109-174
-
-
Rothenberg, E.V.1
Ungerback, J.2
Champhekar, A.3
-
16
-
-
84923292191
-
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
-
[CrossRef] [PubMed]
-
Buettner, F.; Natarajan, K.N.; Casale, F.P.; Proserpio, V.; Scialdone, A.; Theis, F.J.; Teichmann, S.A.; Marioni, J.C.; Stegle, O. Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. Nat. Biotechnol. 2015, 33, 155-160. [CrossRef] [PubMed]
-
(2015)
Nat. Biotechnol
, vol.33
, pp. 155-160
-
-
Buettner, F.1
Natarajan, K.N.2
Casale, F.P.3
Proserpio, V.4
Scialdone, A.5
Theis, F.J.6
Teichmann, S.A.7
Marioni, J.C.8
Stegle, O.9
-
17
-
-
84974845506
-
Nuclear Retention of mRNA in Mammalian Tissues
-
[CrossRef] [PubMed]
-
Bahar Halpern, K.; Caspi, I.; Lemze, D.; Levy, M.; Landen, S.; Elinav, E.; Ulitsky, I.; Itzkovitz, S. Nuclear Retention of mRNA in Mammalian Tissues. Cell Rep. 2015, 13, 2653-2662. [CrossRef] [PubMed]
-
(2015)
Cell Rep
, vol.13
, pp. 2653-2662
-
-
Bahar Halpern, K.1
Caspi, I.2
Lemze, D.3
Levy, M.4
Landen, S.5
Elinav, E.6
Ulitsky, I.7
Itzkovitz, S.8
-
18
-
-
84950278078
-
Control of Transcript Variability in Single Mammalian Cells
-
[CrossRef] [PubMed]
-
Battich, N.; Stoeger, T.; Pelkmans, L. Control of Transcript Variability in Single Mammalian Cells. Cell 2015, 163, 1596-1610. [CrossRef] [PubMed]
-
(2015)
Cell
, vol.163
, pp. 1596-1610
-
-
Battich, N.1
Stoeger, T.2
Pelkmans, L.3
-
19
-
-
84950264000
-
Cell-to-Cell Transcript Variability: Seeing Signal in the Noise
-
[CrossRef] [PubMed]
-
Janes, K.A. Cell-to-Cell Transcript Variability: Seeing Signal in the Noise. Cell 2015, 163, 1566-1568. [CrossRef] [PubMed]
-
(2015)
Cell
, vol.163
, pp. 1566-1568
-
-
Janes, K.A.1
-
20
-
-
84898814417
-
Gene expression regulation mediated through reversible m(6)A RNA methylation
-
[CrossRef] [PubMed]
-
Fu, Y.; Dominissini, D.; Rechavi, G.; He, C. Gene expression regulation mediated through reversible m(6)A RNA methylation. Nat. Rev. Genet. 2014, 15, 293-306. [CrossRef] [PubMed]
-
(2014)
Nat. Rev. Genet
, vol.15
, pp. 293-306
-
-
Fu, Y.1
Dominissini, D.2
Rechavi, G.3
He, C.4
-
21
-
-
84867308703
-
Microwell devices with finger-like channels for long-term imaging of HIV-1 expression kinetics in primary human lymphocytes
-
[CrossRef] [PubMed]
-
Razooky, B.S.; Gutierrez, E.; Terry, V.H.; Spina, C.A.; Groisman, A.; Weinberger, L.S. Microwell devices with finger-like channels for long-term imaging of HIV-1 expression kinetics in primary human lymphocytes. Lab Chip 2012, 12, 4305-4312. [CrossRef] [PubMed]
-
(2012)
Lab Chip
, vol.12
, pp. 4305-4312
-
-
Razooky, B.S.1
Gutierrez, E.2
Terry, V.H.3
Spina, C.A.4
Groisman, A.5
Weinberger, L.S.6
-
22
-
-
41349095731
-
Transient-mediated fate determination in a transcriptional circuit of HIV
-
[CrossRef] [PubMed]
-
Weinberger, L.S.; Dar, R.D.; Simpson, M.L. Transient-mediated fate determination in a transcriptional circuit of HIV. Nat. Genet. 2008, 40, 466-470. [CrossRef] [PubMed]
-
(2008)
Nat. Genet
, vol.40
, pp. 466-470
-
-
Weinberger, L.S.1
Dar, R.D.2
Simpson, M.L.3
-
23
-
-
84947492019
-
Single cell mass cytometry reveals remodeling of human T cell phenotypes by varicella zoster virus
-
[CrossRef] [PubMed]
-
Sen, N.; Mukherjee, G.; Arvin, A.M. Single cell mass cytometry reveals remodeling of human T cell phenotypes by varicella zoster virus. Methods 2015, 90, 85-94. [CrossRef] [PubMed]
-
(2015)
Methods
, vol.90
, pp. 85-94
-
-
Sen, N.1
Mukherjee, G.2
Arvin, A.M.3
-
24
-
-
84862676726
-
A deep profiler’s guide to cytometry
-
[CrossRef] [PubMed]
-
Bendall, S.C.; Nolan, G.P.; Roederer, M.; Chattopadhyay, P.K. A deep profiler’s guide to cytometry. Trends Immunol. 2012, 33, 323-332. [CrossRef] [PubMed]
-
(2012)
Trends Immunol
, vol.33
, pp. 323-332
-
-
Bendall, S.C.1
Nolan, G.P.2
Roederer, M.3
Chattopadhyay, P.K.4
-
25
-
-
84964474595
-
Rapid isolation of dengue-neutralizing antibodies from single cell-sorted human antigen-specific memory B-cell cultures
-
[CrossRef] [PubMed]
-
Cox, K.S.; Tang, A.; Chen, Z.; Horton, M.S.; Yan, H.; Wang, X.M.; Dubey, S.A.; DiStefano, D.J.; Ettenger, A.; Fong, R.H., et al. Rapid isolation of dengue-neutralizing antibodies from single cell-sorted human antigen-specific memory B-cell cultures. MAbs 2016, 8, 129-140. [CrossRef] [PubMed]
-
(2016)
Mabs
, vol.8
, pp. 129-140
-
-
Cox, K.S.1
Tang, A.2
Chen, Z.3
Horton, M.S.4
Yan, H.5
Wang, X.M.6
Dubey, S.A.7
Distefano, D.J.8
Ettenger, A.9
Fong, R.H.10
-
26
-
-
57749204125
-
A novel single-cell quantitative real-time RT-PCR method for quantifying foot-and-mouth disease viral RNA
-
[CrossRef] [PubMed]
-
Huang, X.; Li, Y.; Zheng, C.Y. A novel single-cell quantitative real-time RT-PCR method for quantifying foot-and-mouth disease viral RNA. J. Virol. Methods 2009, 155, 150-156. [CrossRef] [PubMed]
-
(2009)
J. Virol. Methods
, vol.155
, pp. 150-156
-
-
Huang, X.1
Li, Y.2
Zheng, C.Y.3
-
27
-
-
84932618441
-
Characterization of Full-Length Genomes of Hepatitis B Virus Quasispecies in Sera of Patients at Different Phases of Infection
-
[CrossRef] [PubMed]
-
Yang, Z.T.; Huang, S.Y.; Chen, L.; Liu, F.; Cai, X.H.; Guo, Y.F.; Wang, M.J.; Han, Y.; Yu, D.M.; Jiang, J.H., et al. Characterization of Full-Length Genomes of Hepatitis B Virus Quasispecies in Sera of Patients at Different Phases of Infection. J. Clin. Microbiol. 2015, 53, 2203-2214. [CrossRef] [PubMed]
-
(2015)
J. Clin. Microbiol.
, vol.53
, pp. 2203-2214
-
-
Yang, Z.T.1
Huang, S.Y.2
Chen, L.3
Liu, F.4
Cai, X.H.5
Guo, Y.F.6
Wang, M.J.7
Han, Y.8
Yu, D.M.9
Jiang, J.H.10
-
28
-
-
84924561760
-
Hepatitis C virus RNA functionally sequesters miR-122
-
[CrossRef] [PubMed]
-
Luna, J.M.; Scheel, T.K.; Danino, T.; Shaw, K.S.; Mele, A.; Fak, J.J.; Nishiuchi, E.; Takacs, C.N.; Catanese, M.T.; de Jong Y.P.; et al. Hepatitis C virus RNA functionally sequesters miR-122. Cell 2015, 160, 1099-1110. [CrossRef] [PubMed]
-
(2015)
Cell
, vol.160
, pp. 1099-1110
-
-
Luna, J.M.1
Scheel, T.K.2
Danino, T.3
Shaw, K.S.4
Mele, A.5
Fak, J.J.6
Nishiuchi, E.7
Takacs, C.N.8
Catanese, M.T.9
De Jong, Y.P.10
-
29
-
-
84887200190
-
Determining the cellular diversity of hepatitis C virus quasispecies by single-cell viral sequencing
-
[CrossRef] [PubMed]
-
McWilliam Leitch, E.C.; McLauchlan, J. Determining the cellular diversity of hepatitis C virus quasispecies by single-cell viral sequencing. J. Virol. 2013, 87, 12648-12655. [CrossRef] [PubMed]
-
(2013)
J. Virol
, vol.87
, pp. 12648-12655
-
-
McWilliam Leitch, E.C.1
McLauchlan, J.2
-
30
-
-
84871283557
-
Quantification of unintegrated HIV-1 DNA at the single cell level in vivo
-
[CrossRef] [PubMed]
-
Suspene, R.; Meyerhans, A. Quantification of unintegrated HIV-1 DNA at the single cell level in vivo. PLoS ONE 2012, 7, e36246. [CrossRef] [PubMed]
-
(2012)
Plos ONE
, vol.7
, pp. e36246
-
-
Suspene, R.1
Meyerhans, A.2
-
31
-
-
84879511964
-
Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule
-
[CrossRef] [PubMed]
-
Josefsson, L.; Palmer, S.; Faria, N.R.; Lemey, P.; Casazza, J.; Ambrozak, D.; Kearney, M.; Shao, W.; Kottilil, S.; Sneller, M., et al. Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule. PLoS Pathog. 2013, 9, e1003432. [CrossRef] [PubMed]
-
(2013)
Plos Pathog
, vol.9
, pp. e1003432
-
-
Josefsson, L.1
Palmer, S.2
Faria, N.R.3
Lemey, P.4
Casazza, J.5
Ambrozak, D.6
Kearney, M.7
Shao, W.8
Kottilil, S.9
Sneller, M.10
-
32
-
-
84965124729
-
Highlights from the Seventh InternationalWorkshop on HIV Persistence during Therapy, 8-11 December 2015, Miami, Florida, USA
-
Margolis, D.; Karl Salzwedel, K.; Chomont, N.; Psomas, C.; Routy, J.-P.; Guido Poli, G.; Lafeuillade, A. Highlights from the Seventh InternationalWorkshop on HIV Persistence during Therapy, 8-11 December 2015, Miami, Florida, USA. J. Virus Erad. 2016, 2, 57-65.
-
(2016)
J. Virus Erad
, vol.2
, pp. 57-65
-
-
Margolis, D.1
Karl Salzwedel, K.2
Chomont, N.3
Psomas, C.4
Routy, J.-P.5
Guido Poli, G.6
Lafeuillade, A.7
-
33
-
-
85028549351
-
Single-cell analysis identifies biomarkers for HIV permissiveness (Abstract OP2.1)
-
Ciuffi, A.; Quenneville, S.; Rausell, A.; Rato, S.; Muñoz, M.; Telenti, A. Single-cell analysis identifies biomarkers for HIV permissiveness (Abstract OP2.1). J. Virus Erad. 2015, 1 (Suppl. 1), 1-18.
-
(2015)
J. Virus Erad
, vol.1
, pp. 1-18
-
-
Ciuffi, A.1
Quenneville, S.2
Rausell, A.3
Rato, S.4
Muñoz, M.5
Telenti, A.6
-
34
-
-
84979527217
-
Full-length single-cell RNA-seq applied to a viral human cancer: Applications to HPV expression and splicing analysis in HeLa S3 cells
-
[CrossRef] [PubMed]
-
Wu, L.; Zhang, X.; Zhao, Z.; Wang, L.; Li, B.; Li, G.; Dean, M.; Yu, Q.; Wang, Y.; Lin, X., et al. Full-length single-cell RNA-seq applied to a viral human cancer: Applications to HPV expression and splicing analysis in HeLa S3 cells. Gigascience 2015, 4, 1-17. [CrossRef] [PubMed]
-
(2015)
Gigascience
, vol.4
, pp. 1-17
-
-
Wu, L.1
Zhang, X.2
Zhao, Z.3
Wang, L.4
Li, B.5
Li, G.6
Dean, M.7
Yu, Q.8
Wang, Y.9
Lin, X.10
-
35
-
-
77955361749
-
Single-cell analysis of T-cell receptor repertoire of HTLV-1 Tax-specific cytotoxic T cells in allogeneic transplant recipients with adult T-cell leukemia/lymphoma
-
[CrossRef] [PubMed]
-
Tanaka, Y.; Nakasone, H.; Yamazaki, R.; Sato, K.; Sato, M.; Terasako, K.; Kimura, S.; Okuda, S.; Kako, S.; Oshima, K., et al. Single-cell analysis of T-cell receptor repertoire of HTLV-1 Tax-specific cytotoxic T cells in allogeneic transplant recipients with adult T-cell leukemia/lymphoma. Cancer Res. 2010, 70, 6181-6192. [CrossRef] [PubMed]
-
(2010)
Cancer Res
, vol.70
, pp. 6181-6192
-
-
Tanaka, Y.1
Nakasone, H.2
Yamazaki, R.3
Sato, K.4
Sato, M.5
Terasako, K.6
Kimura, S.7
Okuda, S.8
Kako, S.9
Oshima, K.10
-
36
-
-
84947782751
-
Single-cell analysis and stochastic modelling unveil large cell-to-cell variability in influenza A virus infection
-
[CrossRef] [PubMed]
-
Heldt, F.S.; Kupke, S.Y.; Dorl, S.; Reichl, U.; Frensing, T. Single-cell analysis and stochastic modelling unveil large cell-to-cell variability in influenza A virus infection. Nat. Commun. 2015, 6, 8938. [CrossRef] [PubMed]
-
(2015)
Nat. Commun
, vol.6
, pp. 8938
-
-
Heldt, F.S.1
Kupke, S.Y.2
Dorl, S.3
Reichl, U.4
Frensing, T.5
-
37
-
-
84958819091
-
Modeling the intracellular replication of influenza A virus in the presence of defective interfering RNAs
-
[CrossRef] [PubMed]
-
Laske, T.; Heldt, F.S.; Hoffmann, H.; Frensing, T.; Reichl, U. Modeling the intracellular replication of influenza A virus in the presence of defective interfering RNAs. Virus Res. 2016, 213, 90-99. [CrossRef] [PubMed]
-
(2016)
Virus Res
, vol.213
, pp. 90-99
-
-
Laske, T.1
Heldt, F.S.2
Hoffmann, H.3
Frensing, T.4
Reichl, U.5
-
38
-
-
84899811665
-
Single-cell analysis uncovers extensive biological noise in poliovirus replication
-
[CrossRef] [PubMed]
-
Schulte, M.B.; Andino, R. Single-cell analysis uncovers extensive biological noise in poliovirus replication. J. Virol. 2014, 88, 6205-6212. [CrossRef] [PubMed]
-
(2014)
J. Virol
, vol.88
, pp. 6205-6212
-
-
Schulte, M.B.1
Andino, R.2
-
39
-
-
84922937900
-
Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses
-
[CrossRef] [PubMed]
-
Schulte, M.B.; Draghi, J.A.; Plotkin, J.B.; Andino, R. Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses. Elife 2015, 4, e03753. [CrossRef] [PubMed]
-
(2015)
Elife
, vol.4
, pp. e03753
-
-
Schulte, M.B.1
Draghi, J.A.2
Plotkin, J.B.3
Andino, R.4
-
40
-
-
60349083295
-
Growth of an RNA virus in single cells reveals a broad fitness distribution
-
[CrossRef] [PubMed]
-
Zhu, Y.; Yongky, A.; Yin, J. Growth of an RNA virus in single cells reveals a broad fitness distribution. Virology 2009, 385, 39-46. [CrossRef] [PubMed]
-
(2009)
Virology
, vol.385
, pp. 39-46
-
-
Zhu, Y.1
Yongky, A.2
Yin, J.3
-
41
-
-
84856235072
-
Kinetics of virus production from single cells
-
[CrossRef] [PubMed]
-
Timm, A.; Yin, J. Kinetics of virus production from single cells. Virology 2012, 424, 11-17. [CrossRef] [PubMed]
-
(2012)
Virology
, vol.424
, pp. 11-17
-
-
Timm, A.1
Yin, J.2
-
42
-
-
84896727346
-
Quantitative characterization of defective virus emergence by deep sequencing
-
[CrossRef] [PubMed]
-
Timm, C.; Akpinar, F.; Yin, J. Quantitative characterization of defective virus emergence by deep sequencing. J. Virol. 2014, 88, 2623-2632. [CrossRef] [PubMed]
-
(2014)
J. Virol
, vol.88
, pp. 2623-2632
-
-
Timm, C.1
Akpinar, F.2
Yin, J.3
-
43
-
-
84958078465
-
High-Throughput Single-Cell Kinetics of Virus Infections in the Presence of Defective Interfering Particles
-
[CrossRef] [PubMed]
-
Akpinar, F.; Timm, A.; Yin, J. High-Throughput Single-Cell Kinetics of Virus Infections in the Presence of Defective Interfering Particles. J. Virol. 2015, 90, 1599-1612. [CrossRef] [PubMed]
-
(2015)
J. Virol
, vol.90
, pp. 1599-1612
-
-
Akpinar, F.1
Timm, A.2
Yin, J.3
-
44
-
-
84944213433
-
Single-Cell Analysis of RNA Virus Infection Identifies Multiple Genetically Diverse Viral Genomes within Single Infectious Units
-
[CrossRef] [PubMed]
-
Combe, M.; Garijo, R.; Geller, R.; Cuevas, J.M.; Sanjuan, R. Single-Cell Analysis of RNA Virus Infection Identifies Multiple Genetically Diverse Viral Genomes within Single Infectious Units. Cell Host Microbe 2015, 18, 424-432. [CrossRef] [PubMed]
-
(2015)
Cell Host Microbe
, vol.18
, pp. 424-432
-
-
Combe, M.1
Garijo, R.2
Geller, R.3
Cuevas, J.M.4
Sanjuan, R.5
-
45
-
-
84904789189
-
Single-cell mass cytometry analysis of human tonsil T cell remodeling by varicella zoster virus
-
[CrossRef] [PubMed]
-
Sen, N.; Mukherjee, G.; Sen, A.; Bendall, S.C.; Sung, P.; Nolan, G.P.; Arvin, A.M. Single-cell mass cytometry analysis of human tonsil T cell remodeling by varicella zoster virus. Cell Rep. 2014, 8, 633-645. [CrossRef] [PubMed]
-
(2014)
Cell Rep
, vol.8
, pp. 633-645
-
-
Sen, N.1
Mukherjee, G.2
Sen, A.3
Bendall, S.C.4
Sung, P.5
Nolan, G.P.6
Arvin, A.M.7
-
46
-
-
84948779970
-
Neutralizing antibodies againstWest Nile virus identified directly from human B cells by single-cell analysis and next generation sequencing
-
[CrossRef] [PubMed]
-
Tsioris, K.; Gupta, N.T.; Ogunniyi, A.O.; Zimnisky, R.M.; Qian, F.; Yao, Y.; Wang, X.; Stern, J.N.; Chari, R.; Briggs, A.W., et al. Neutralizing antibodies againstWest Nile virus identified directly from human B cells by single-cell analysis and next generation sequencing. Integr. Biol. (Camb.) 2015, 7, 1587-1597. [CrossRef] [PubMed]
-
(2015)
Integr. Biol. (Camb.)
, vol.7
, pp. 1587-1597
-
-
Tsioris, K.1
Gupta, N.T.2
Ogunniyi, A.O.3
Zimnisky, R.M.4
Qian, F.5
Yao, Y.6
Wang, X.7
Stern, J.N.8
Chari, R.9
Briggs, A.W.10
-
47
-
-
84947805126
-
Sincell: An R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq
-
[CrossRef] [PubMed]
-
Julia, M.; Telenti, A.; Rausell, A. Sincell: An R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq. Bioinformatics 2015. [CrossRef] [PubMed]
-
(2015)
Bioinformatics
-
-
Julia, M.1
Telenti, A.2
Rausell, A.3
-
48
-
-
84936741267
-
Potent Cell-Intrinsic Immune Responses in Dendritic Cells Facilitate HIV-1-Specific T Cell Immunity in HIV-1 Elite Controllers
-
[CrossRef] [PubMed]
-
Martin-Gayo, E.; Buzon, M.J.; Ouyang, Z.; Hickman, T.; Cronin, J.; Pimenova, D.; Walker, B.D.; Lichterfeld, M.; Yu, X.G. Potent Cell-Intrinsic Immune Responses in Dendritic Cells Facilitate HIV-1-Specific T Cell Immunity in HIV-1 Elite Controllers. PLoS Pathog. 2015, 11, e1004930. [CrossRef] [PubMed]
-
(2015)
Plos Pathog
, vol.11
, pp. e1004930
-
-
Martin-Gayo, E.1
Buzon, M.J.2
Ouyang, Z.3
Hickman, T.4
Cronin, J.5
Pimenova, D.6
Walker, B.D.7
Lichterfeld, M.8
Yu, X.G.9
-
49
-
-
84965096133
-
Identification of a Highly Functional DC Subset in Controllers by Single-Cell RNA-Seq (Abstract 19)
-
Boston, MA, USA, 22-25 February
-
Martin-Gayo, E.; Cole, M.; Kolb, K.E.; Ouyang, Z.; Kazer, S.W.; Walker, B.D.; Yosef, N.; Shalek, A.K.; Yu, X.G. Identification of a Highly Functional DC Subset in Controllers by Single-Cell RNA-Seq (Abstract 19). In Proceedings of the Conference on Retroviruses and Opportunistic Infections, Boston, MA, USA, 22-25 February 2016.
-
(2016)
Proceedings of the Conference on Retroviruses and Opportunistic Infections
-
-
Martin-Gayo, E.1
Cole, M.2
Kolb, K.E.3
Ouyang, Z.4
Kazer, S.W.5
Walker, B.D.6
Yosef, N.7
Shalek, A.K.8
Yu, X.G.9
-
50
-
-
84924423596
-
Integrated genome and transcriptome sequencing of the same cell
-
[CrossRef] [PubMed]
-
Dey, S.S.; Kester, L.; Spanjaard, B.; Bienko, M.; van Oudenaarden A. Integrated genome and transcriptome sequencing of the same cell. Nat. Biotechnol. 2015, 33, 285-289. [CrossRef] [PubMed]
-
(2015)
Nat. Biotechnol
, vol.33
, pp. 285-289
-
-
Dey, S.S.1
Kester, L.2
Spanjaard, B.3
Bienko, M.4
Van Oudenaarden, A.5
|