-
1
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta, R.A., Shah, N., Wang, K.C., Kim, J., Horlings, H.M., Wong, D.J., Tsai, M.C., Hung, T., Argani, P., Rinn, J.L. et al. (2010) Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature, 464, 1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
-
2
-
-
80052869283
-
LincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman, M., Donaghey, J., Carey, B.W., Garber, M., Grenier, J.K., Munson, G., Young, G., Lucas, A.B., Ach, R., Bruhn, L. et al. (2011) lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature, 477, 295-300.
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
-
3
-
-
79959756263
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
-
Hung, T., Wang, Y., Lin, M.F., Koegel, A.K., Kotake, Y., Grant, G.D., Horlings, H.M., Shah, N., Umbricht, C., Wang, P. et al. (2011) Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat. Genet., 43, 621-629.
-
(2011)
Nat. Genet.
, vol.43
, pp. 621-629
-
-
Hung, T.1
Wang, Y.2
Lin, M.F.3
Koegel, A.K.4
Kotake, Y.5
Grant, G.D.6
Horlings, H.M.7
Shah, N.8
Umbricht, C.9
Wang, P.10
-
4
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil, A.M., Guttman, M., Huarte, M., Garber, M., Raj, A., Morales, D., Thomas, K., Presser, A., Bernstein, B.E., van Oudenaarden, A. et al. (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc. Natl. Acad. Sci. U.S.A., 106, 11667-11672.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
Van Oudenaarden, A.10
-
5
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner, J.R., Iyer, M.K., Balbin, O.A., Dhanasekaran, S.M., Cao, Q., Brenner, J.C., Laxman, B., Asangani, I.A., Grasso, C.S., Kominsky, H.D. et al. (2011) Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat. Biotechnol., 29, 742-749.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 742-749
-
-
Prensner, J.R.1
Iyer, M.K.2
Balbin, O.A.3
Dhanasekaran, S.M.4
Cao, Q.5
Brenner, J.C.6
Laxman, B.7
Asangani, I.A.8
Grasso, C.S.9
Kominsky, H.D.10
-
6
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai, M.C., Manor, O., Wan, Y., Mosammaparast, N., Wang, J.K., Lan, F., Shi, Y., Segal, E. and Chang, H.Y. (2010) Long noncoding RNA as modular scaffold of histone modification complexes. Science, 329, 689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
7
-
-
60349120914
-
Long non-coding RNAs: Insights into functions
-
Mercer, T.R., Dinger, M.E. and Mattick, J.S. (2009) Long non-coding RNAs: insights into functions. Nat. Rev. Genet., 10, 155-159.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 155-159
-
-
Mercer, T.R.1
Dinger, M.E.2
Mattick, J.S.3
-
8
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang, K.C. and Chang, H.Y. (2011) Molecular mechanisms of long noncoding RNAs. Mol. Cell, 43, 904-914.
-
(2011)
Mol. Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
9
-
-
84879987789
-
LincRNAs: Genomics, evolution, and mechanisms
-
Ulitsky, I. and Bartel, D.P. (2013) lincRNAs: genomics, evolution, and mechanisms. Cell, 154, 26-46.
-
(2013)
Cell
, vol.154
, pp. 26-46
-
-
Ulitsky, I.1
Bartel, D.P.2
-
10
-
-
84868683051
-
Regulation of mammalian cell differentiation by long non-coding RNAs
-
Hu, W., Alvarez-Dominguez, J.R. and Lodish, H.F. (2012) Regulation of mammalian cell differentiation by long non-coding RNAs. EMBO Rep., 13, 971-983.
-
(2012)
EMBO Rep.
, vol.13
, pp. 971-983
-
-
Hu, W.1
Alvarez-Dominguez, J.R.2
Lodish, H.F.3
-
11
-
-
78649467088
-
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
-
Loewer, S., Cabili, M.N., Guttman, M., Loh, Y.H., Thomas, K., Park, I.H., Garber, M., Curran, M., Onder, T., Agarwal, S. et al. (2010) Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat. Genet., 42, 1113-1117.
-
(2010)
Nat. Genet.
, vol.42
, pp. 1113-1117
-
-
Loewer, S.1
Cabili, M.N.2
Guttman, M.3
Loh, Y.H.4
Thomas, K.5
Park, I.H.6
Garber, M.7
Curran, M.8
Onder, T.9
Agarwal, S.10
-
12
-
-
84876367541
-
Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal
-
Wang, Y., Xu, Z., Jiang, J., Xu, C., Kang, J., Xiao, L., Wu, M., Xiong, J., Guo, X. and Liu, H. (2013) Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal. Dev. Cell, 25, 69-80.
-
(2013)
Dev. Cell
, vol.25
, pp. 69-80
-
-
Wang, Y.1
Xu, Z.2
Jiang, J.3
Xu, C.4
Kang, J.5
Xiao, L.6
Wu, M.7
Xiong, J.8
Guo, X.9
Liu, H.10
-
13
-
-
84874645551
-
The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage
-
Zhang, A., Zhou, N., Huang, J., Liu, Q., Fukuda, K., Ma, D., Lu, Z., Bai, C., Watabe, K. and Mo, Y.Y. (2013) The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage. Cell Res., 23, 340-350.
-
(2013)
Cell Res.
, vol.23
, pp. 340-350
-
-
Zhang, A.1
Zhou, N.2
Huang, J.3
Liu, Q.4
Fukuda, K.5
Ma, D.6
Lu, Z.7
Bai, C.8
Watabe, K.9
Mo, Y.Y.10
-
14
-
-
84923860739
-
LincRNA-RoR and miR-145 regulate invasion in triple-negative breast cancer via targeting ARF6
-
Eades, G., Wolfson, B., Zhang, Y., Li, Q., Yao, Y. and Zhou, Q. (2015) lincRNA-RoR and miR-145 regulate invasion in triple-negative breast cancer via targeting ARF6. Mol. Cancer Res.: MCR, 13, 330-338.
-
(2015)
Mol. Cancer Res.: MCR
, vol.13
, pp. 330-338
-
-
Eades, G.1
Wolfson, B.2
Zhang, Y.3
Li, Q.4
Yao, Y.5
Zhou, Q.6
-
15
-
-
0023893567
-
Sequence analysis of the MYC oncogene involved in the t(8;14)(q24;q11) chromosome translocation in a human leukemia T-cell line indicates that putative regulatory regions are not altered
-
Finver, S.N., Nishikura, K., Finger, L.R., Haluska, F.G., Finan, J., Nowell, P.C. and Croce, C.M. (1988) Sequence analysis of the MYC oncogene involved in the t(8;14)(q24;q11) chromosome translocation in a human leukemia T-cell line indicates that putative regulatory regions are not altered. Proc. Natl. Acad. Sci. U.S.A., 85, 3052-3056.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 3052-3056
-
-
Finver, S.N.1
Nishikura, K.2
Finger, L.R.3
Haluska, F.G.4
Finan, J.5
Nowell, P.C.6
Croce, C.M.7
-
16
-
-
0023142978
-
C-myc oncogene expression in colorectal cancer
-
Sikora, K., Chan, S., Evan, G., Gabra, H., Markham, N., Stewart, J. and Watson, J. (1987) c-myc oncogene expression in colorectal cancer. Cancer, 59, 1289-1295.
-
(1987)
Cancer
, vol.59
, pp. 1289-1295
-
-
Sikora, K.1
Chan, S.2
Evan, G.3
Gabra, H.4
Markham, N.5
Stewart, J.6
Watson, J.7
-
17
-
-
62549148270
-
P53 represses c-Myc through induction of the tumor suppressor miR-145
-
Sachdeva, M., Zhu, S., Wu, F., Wu, H., Walia, V., Kumar, S., Elble, R., Watabe, K. and Mo, Y.Y. (2009) p53 represses c-Myc through induction of the tumor suppressor miR-145. Proc. Natl. Acad. Sci. U.S.A., 106, 3207-3212.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 3207-3212
-
-
Sachdeva, M.1
Zhu, S.2
Wu, F.3
Wu, H.4
Walia, V.5
Kumar, S.6
Elble, R.7
Watabe, K.8
Mo, Y.Y.9
-
18
-
-
0027496464
-
Purification, characterization, and cDNA cloning of an AU-rich element RNA-binding protein, AUF1
-
Zhang, W., Wagner, B.J., Ehrenman, K., Schaefer, A.W., DeMaria, C.T., Crater, D., DeHaven, K., Long, L. and Brewer, G. (1993) Purification, characterization, and cDNA cloning of an AU-rich element RNA-binding protein, AUF1. Mol. Cell. Biol., 13, 7652-7665.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 7652-7665
-
-
Zhang, W.1
Wagner, B.J.2
Ehrenman, K.3
Schaefer, A.W.4
DeMaria, C.T.5
Crater, D.6
DeHaven, K.7
Long, L.8
Brewer, G.9
-
19
-
-
84885423196
-
Negative regulation of lncRNA GAS5 by miR-21
-
Zhang, Z., Zhu, Z., Watabe, K., Zhang, X., Bai, C., Xu, M., Wu, F. and Mo, Y.Y. (2013) Negative regulation of lncRNA GAS5 by miR-21. Cell Death Differ., 20, 1558-1568.
-
(2013)
Cell Death Differ.
, vol.20
, pp. 1558-1568
-
-
Zhang, Z.1
Zhu, Z.2
Watabe, K.3
Zhang, X.4
Bai, C.5
Xu, M.6
Wu, F.7
Mo, Y.Y.8
-
20
-
-
34247495591
-
MiR-21-mediated tumor growth
-
Si, M.L., Zhu, S., Wu, H., Lu, Z., Wu, F. and Mo, Y.Y. (2007) miR-21-mediated tumor growth. Oncogene, 26, 2799-2803.
-
(2007)
Oncogene
, vol.26
, pp. 2799-2803
-
-
Si, M.L.1
Zhu, S.2
Wu, H.3
Lu, Z.4
Wu, F.5
Mo, Y.Y.6
-
21
-
-
84877270735
-
LncRNA loc285194 is a p53-regulated tumor suppressor
-
Liu, Q., Huang, J., Zhou, N., Zhang, Z., Zhang, A., Lu, Z., Wu, F. and Mo, Y.Y. (2013) LncRNA loc285194 is a p53-regulated tumor suppressor. Nucleic Acids Res., 41, 4976-4987.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 4976-4987
-
-
Liu, Q.1
Huang, J.2
Zhou, N.3
Zhang, Z.4
Zhang, A.5
Lu, Z.6
Wu, F.7
Mo, Y.Y.8
-
22
-
-
84936077333
-
Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines
-
Ho, T.T., Zhou, N., Huang, J., Koirala, P., Xu, M., Fung, R., Wu, F. and Mo, Y.Y. (2015) Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines. Nucleic Acids Rese., 43, e17.
-
(2015)
Nucleic Acids Rese.
, vol.43
, pp. e17
-
-
Ho, T.T.1
Zhou, N.2
Huang, J.3
Koirala, P.4
Xu, M.5
Fung, R.6
Wu, F.7
Mo, Y.Y.8
-
23
-
-
84887010498
-
Genome engineering using the CRISPR-Cas9 system
-
Ran, F.A., Hsu, P.D., Wright, J., Agarwala, V., Scott, D.A. and Zhang, F. (2013) Genome engineering using the CRISPR-Cas9 system. Nat. Protoc., 8, 2281-2308.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 2281-2308
-
-
Ran, F.A.1
Hsu, P.D.2
Wright, J.3
Agarwala, V.4
Scott, D.A.5
Zhang, F.6
-
24
-
-
34250771133
-
Gam1-associated alterations of drug responsiveness through activation of apoptosis
-
Wu, F., Chiocca, S., Beck, W.T. and Mo, Y.Y. (2007) Gam1-associated alterations of drug responsiveness through activation of apoptosis. Mol. Cancer Ther., 6, 1823-1830.
-
(2007)
Mol. Cancer Ther.
, vol.6
, pp. 1823-1830
-
-
Wu, F.1
Chiocca, S.2
Beck, W.T.3
Mo, Y.Y.4
-
25
-
-
80054924924
-
ANAT: A tool for constructing and analyzing functional protein networks
-
Yosef, N., Zalckvar, E., Rubinstein, A.D., Homilius, M., Atias, N., Vardi, L., Berman, I., Zur, H., Kimchi, A., Ruppin, E. et al. (2011) ANAT: a tool for constructing and analyzing functional protein networks. Sci. Signal., 4, pl1.
-
(2011)
Sci. Signal.
, vol.4
, pp. pl1
-
-
Yosef, N.1
Zalckvar, E.2
Rubinstein, A.D.3
Homilius, M.4
Atias, N.5
Vardi, L.6
Berman, I.7
Zur, H.8
Kimchi, A.9
Ruppin, E.10
-
26
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L., Ran, F.A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P.D., Wu, X., Jiang, W., Marraffini, L.A. et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science, 339, 819-823.
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
Habib, N.6
Hsu, P.D.7
Wu, X.8
Jiang, W.9
Marraffini, L.A.10
-
27
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
Mali, P., Yang, L., Esvelt, K.M., Aach, J., Guell, M., DiCarlo, J.E., Norville, J.E. and Church, G.M. (2013) RNA-guided human genome engineering via Cas9. Science, 339, 823-826.
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
DiCarlo, J.E.6
Norville, J.E.7
Church, G.M.8
-
29
-
-
0026337150
-
An A + U-rich element RNA-binding factor regulates c-myc mRNA stability in vitro
-
Brewer, G. (1991) An A + U-rich element RNA-binding factor regulates c-myc mRNA stability in vitro. Mol. Cell. Biol., 11, 2460-2466.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 2460-2466
-
-
Brewer, G.1
-
30
-
-
73649086216
-
A region within the 5′-untranslated region of hypoxia-inducible factor-1alpha mRNA mediates its turnover in lung adenocarcinoma cells
-
Wang, M.J. and Lin, S. (2009) A region within the 5′-untranslated region of hypoxia-inducible factor-1alpha mRNA mediates its turnover in lung adenocarcinoma cells. J. Biol. Chem., 284, 36500-36510.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 36500-36510
-
-
Wang, M.J.1
Lin, S.2
-
31
-
-
58549113809
-
Identification of a signature motif in target mRNAs of RNA-binding protein AUF1
-
Mazan-Mamczarz, K., Kuwano, Y., Zhan, M., White, E.J., Martindale, J.L., Lal, A. and Gorospe, M. (2009) Identification of a signature motif in target mRNAs of RNA-binding protein AUF1. Nucleic Acids Res., 37, 204-214.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 204-214
-
-
Mazan-Mamczarz, K.1
Kuwano, Y.2
Zhan, M.3
White, E.J.4
Martindale, J.L.5
Lal, A.6
Gorospe, M.7
-
32
-
-
33845961718
-
The polypyrimidine tract-binding protein (PTB) is involved in the post-transcriptional regulation of human inducible nitric oxide synthase expression
-
Pautz, A., Linker, K., Hubrich, T., Korhonen, R., Altenhofer, S. and Kleinert, H. (2006) The polypyrimidine tract-binding protein (PTB) is involved in the post-transcriptional regulation of human inducible nitric oxide synthase expression. J. Biol. Chem., 281, 32294-32302.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 32294-32302
-
-
Pautz, A.1
Linker, K.2
Hubrich, T.3
Korhonen, R.4
Altenhofer, S.5
Kleinert, H.6
-
33
-
-
4143122397
-
Concurrent versus individual binding of HuR and AUF1 to common labile target mRNAs
-
Lal, A., Mazan-Mamczarz, K., Kawai, T., Yang, X., Martindale, J.L. and Gorospe, M. (2004) Concurrent versus individual binding of HuR and AUF1 to common labile target mRNAs. EMBO J., 23, 3092-3102.
-
(2004)
EMBO J.
, vol.23
, pp. 3092-3102
-
-
Lal, A.1
Mazan-Mamczarz, K.2
Kawai, T.3
Yang, X.4
Martindale, J.L.5
Gorospe, M.6
-
34
-
-
0033551374
-
MYC oncogenes and human neoplastic disease
-
Nesbit, C.E., Tersak, J.M. and Prochownik, E.V. (1999) MYC oncogenes and human neoplastic disease. Oncogene, 18, 3004-3016.
-
(1999)
Oncogene
, vol.18
, pp. 3004-3016
-
-
Nesbit, C.E.1
Tersak, J.M.2
Prochownik, E.V.3
-
35
-
-
0032905924
-
C-Myc target genes involved in cell growth, apoptosis, and metabolism
-
Dang, C.V. (1999) c-Myc target genes involved in cell growth, apoptosis, and metabolism. Mol. Cell. Biol., 19, 1-11.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1-11
-
-
Dang, C.V.1
-
36
-
-
0033788541
-
Post-transcriptional deregulation of myc genes in lung cancer cell lines
-
Bernasconi, N.L., Wormhoudt, T.A. and Laird-Offringa, I.A. (2000) Post-transcriptional deregulation of myc genes in lung cancer cell lines. Am. J. Respir. Cell Mol. Biol., 23, 560-565.
-
(2000)
Am. J. Respir. Cell Mol. Biol.
, vol.23
, pp. 560-565
-
-
Bernasconi, N.L.1
Wormhoudt, T.A.2
Laird-Offringa, I.A.3
-
37
-
-
15844383918
-
AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation
-
DeMaria, C.T. and Brewer, G. (1996) AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation. J. Biol. Chem., 271, 12179-12184.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 12179-12184
-
-
DeMaria, C.T.1
Brewer, G.2
-
38
-
-
0023517027
-
Rapid cytoplasmic turnover of c-myc mRNA: Requirement of the 3′ untranslated sequences
-
Jones, T.R. and Cole, M.D. (1987) Rapid cytoplasmic turnover of c-myc mRNA: requirement of the 3′ untranslated sequences. Mol. Cell. Biol., 7, 4513-4521.
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 4513-4521
-
-
Jones, T.R.1
Cole, M.D.2
-
39
-
-
77956687928
-
Functional diversity of the hnRNPs: Past, present and perspectives
-
Han, S.P., Tang, Y.H. and Smith, R. (2010) Functional diversity of the hnRNPs: past, present and perspectives. Biochem. J., 430, 379-392.
-
(2010)
Biochem. J.
, vol.430
, pp. 379-392
-
-
Han, S.P.1
Tang, Y.H.2
Smith, R.3
|