메뉴 건너뛰기




Volumn 9, Issue 2, 2016, Pages 114-123

Protein-protein interaction network analysis of cirrhosis liver disease

Author keywords

Cirrhosis; DAVID bioinformatics resources 6.7; Gene ontology; Protein protein interaction network

Indexed keywords

ALPHA POLYPEPTIDE I; APOLIPOPROTEIN A1; APOLIPOPROTEIN A4; APOLIPOPROTEIN C3; CALPONIN; CALPONIN 1; COMPLEMENT COMPONENT C7; FIBROBLAST GROWTH FACTOR RECEPTOR 4; GALECTIN 3; GALECTIN 4; LECTIN; MICROFIBRILLAR ASSOCIATED PROTEIN 4; POLYPEPTIDE; PROCOLLAGEN PROLINE 2 OXOGLUTARATE 4 DIOXYGENASE; PROTEIN DERIVATIVE; TRANSGELIN; TROPOMYOSIN; TROPOMYOSIN 2; TROPOMYOSIN 4; UNCLASSIFIED DRUG;

EID: 84964394240     PISSN: 20082258     EISSN: 20084234     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (57)

References (52)
  • 1
    • 40049097359 scopus 로고    scopus 로고
    • Liver cirrhosis
    • Schuppan D, Afdhal NH. Liver cirrhosis. Lancet 2008; 371:838-51.
    • (2008) Lancet , vol.371 , pp. 838-851
    • Schuppan, D.1    Afdhal, N.H.2
  • 2
    • 0032833628 scopus 로고    scopus 로고
    • Epidemiology of primary liver cancer
    • Bosch FX, Ribes J, Borras J. Epidemiology of primary liver cancer. Semin Liver Dis 1999; 19(3):271-85.
    • (1999) Semin Liver Dis , vol.19 , Issue.3 , pp. 271-285
    • Bosch, F.X.1    Ribes, J.2    Borras, J.3
  • 3
  • 4
    • 35948954244 scopus 로고    scopus 로고
    • Hepatic stellate cells: protean, multifunctional, and enigmatic cells of the liver
    • Friedman SL. Hepatic stellate cells: protean, multifunctional, and enigmatic cells of the liver. Physiol Rev 2008; 88:125-72.
    • (2008) Physiol Rev , vol.88 , pp. 125-172
    • Friedman, S.L.1
  • 5
    • 69249148700 scopus 로고    scopus 로고
    • A proteomic strategy to identify novel serum biomarkers for liver cirrhosis and hepatocellular cancer in individuals with fatty liver disease
    • Gray J, Chattopadhyay D, Beale GS, Patman GL, Miele L, King BP, et al. A proteomic strategy to identify novel serum biomarkers for liver cirrhosis and hepatocellular cancer in individuals with fatty liver disease. BMC Cancer 2009; 9:1471-2407.
    • (2009) BMC Cancer , vol.9 , pp. 1471-2407
    • Gray, J.1    Chattopadhyay, D.2    Beale, G.S.3    Patman, G.L.4    Miele, L.5    King, B.P.6
  • 7
    • 33748526469 scopus 로고    scopus 로고
    • Cirrhosis and chronic liver failure: part I. Diagnosis and evaluation
    • Heidelbaugh JJ, Bruderly M. Cirrhosis and chronic liver failure: part I. Diagnosis and evaluation. Am Fam Physician 2006; 74:756-62.
    • (2006) Am Fam Physician , vol.74 , pp. 756-762
    • Heidelbaugh, J.J.1    Bruderly, M.2
  • 8
    • 85047687698 scopus 로고    scopus 로고
    • 1H NMR-based serum metabolic profiling in compensated and decompensated cirrhosis
    • Qi SW, Tu ZG, Peng WJ, Wang LX, Ou-Yang X, Cai AJ, et al. 1H NMR-based serum metabolic profiling in compensated and decompensated cirrhosis. World J Gastroenterol 2012; 18:285-90.
    • (2012) World J Gastroenterol , vol.18 , pp. 285-290
    • Qi, S.W.1    Tu, Z.G.2    Peng, W.J.3    Wang, L.X.4    Ou-Yang, X.5    Cai, A.J.6
  • 10
    • 63849185899 scopus 로고    scopus 로고
    • Gas chromatography/mass spectrometry screening of serum metabolomic biomarkers in hepatitis B virus infected cirrhosis patients
    • Xue R, Dong L, Wu H, Liu T, Wang J, Shen X. Gas chromatography/mass spectrometry screening of serum metabolomic biomarkers in hepatitis B virus infected cirrhosis patients. Clin Chem Lab Med 2009; 47:305-10.
    • (2009) Clin Chem Lab Med , vol.47 , pp. 305-310
    • Xue, R.1    Dong, L.2    Wu, H.3    Liu, T.4    Wang, J.5    Shen, X.6
  • 11
    • 58949103709 scopus 로고    scopus 로고
    • Proteomic analysis of HCV cirrhosis and HCV-induced HCC: identifying biomarkers for monitoring HCV-cirrhotic patients awaiting liver transplantation
    • Mas VR, Maluf DG, Archer KJ, Yanek K, Bornstein K, Fisher RA. Proteomic analysis of HCV cirrhosis and HCV-induced HCC: identifying biomarkers for monitoring HCV-cirrhotic patients awaiting liver transplantation. Transplantation 2009; 87:143-52.
    • (2009) Transplantation , vol.87 , pp. 143-152
    • Mas, V.R.1    Maluf, D.G.2    Archer, K.J.3    Yanek, K.4    Bornstein, K.5    Fisher, R.A.6
  • 12
    • 65449125801 scopus 로고    scopus 로고
    • Detection of novel biomarkers of liver cirrhosis by proteomic analysis
    • Molleken C, Sitek B, Henkel C, Poschmann G, Sipos B, Wiese S, et al. Detection of novel biomarkers of liver cirrhosis by proteomic analysis. Hepatology 2009; 49:1257-66.
    • (2009) Hepatology , vol.49 , pp. 1257-1266
    • Molleken, C.1    Sitek, B.2    Henkel, C.3    Poschmann, G.4    Sipos, B.5    Wiese, S.6
  • 13
    • 0032930957 scopus 로고    scopus 로고
    • N-acetyltransferase-2, glutathione S-transferase M1, alcohol dehydrogenase, and cytochrome P450IIE1 genotypes in alcoholic liver cirrhosis: a case-control study
    • Rodrigo L, Alvarez V, Rodriguez M, Perez R, Alvarez R, Coto E. N-acetyltransferase-2, glutathione S-transferase M1, alcohol dehydrogenase, and cytochrome P450IIE1 genotypes in alcoholic liver cirrhosis: a case-control study. Scand J Gastroenterol 1999; 34:303-07.
    • (1999) Scand J Gastroenterol , vol.34 , pp. 303-307
    • Rodrigo, L.1    Alvarez, V.2    Rodriguez, M.3    Perez, R.4    Alvarez, R.5    Coto, E.6
  • 14
    • 1242336973 scopus 로고    scopus 로고
    • Cancer-associated molecular signature in the tissue samples of patients with cirrhosis
    • Kim JW, Ye Q, Forgues M, Chen Y, Budhu A, Sime J, et al. Cancer-associated molecular signature in the tissue samples of patients with cirrhosis. Hepatology 2004; 39:518-27.
    • (2004) Hepatology , vol.39 , pp. 518-527
    • Kim, J.W.1    Ye, Q.2    Forgues, M.3    Chen, Y.4    Budhu, A.5    Sime, J.6
  • 18
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009; 4(1):44-57.
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 19
    • 84931315833 scopus 로고    scopus 로고
    • Proteomic study in the rat hippocampus as a measure of human Alzheimer's disease
    • In Persian
    • Ghamari E, Zali H, Rezaie Tavirani M, Hesami Takalu S, Goshadrou F, Ahmadi N, et al. Proteomic study in the rat hippocampus as a measure of human Alzheimer's disease. Koomesh 2015; 16:611-20. [In Persian]
    • (2015) Koomesh , vol.16 , pp. 611-620
    • Ghamari, E.1    Zali, H.2    Rezaie Tavirani, M.3    Hesami Takalu, S.4    Goshadrou, F.5    Ahmadi, N.6
  • 20
    • 25444507101 scopus 로고    scopus 로고
    • DynGO: a tool for visualizing and mining of gene ontology and its associations
    • Liu H, Hu ZZ, Wu CH. DynGO: a tool for visualizing and mining of gene ontology and its associations. BMC Bioinformatics 2005; 6:201.
    • (2005) BMC Bioinformatics , vol.6 , pp. 201
    • Liu, H.1    Hu, Z.Z.2    Wu, C.H.3
  • 21
    • 25444469954 scopus 로고    scopus 로고
    • GObar: a gene ontology based analysis and visualization tool for gene sets
    • Lee JS, Katari G, Sachidanandam R. GObar: a gene ontology based analysis and visualization tool for gene sets. BMC Bioinformatics 2005; 6:189.
    • (2005) BMC Bioinformatics , vol.6 , pp. 189
    • Lee, J.S.1    Katari, G.2    Sachidanandam, R.3
  • 22
    • 41349115432 scopus 로고    scopus 로고
    • The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
    • Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, et al. The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biol 2007; 8(9): R183.
    • (2007) Genome Biol , vol.8 , Issue.9 , pp. R183
    • Huang, D.W.1    Sherman, B.T.2    Tan, Q.3    Collins, J.R.4    Alvord, W.G.5    Roayaei, J.6
  • 23
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2008; 4:44-57.
    • (2008) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 25
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang DW, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009; 37:1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 26
    • 84922559840 scopus 로고    scopus 로고
    • Protein drug targets of lavandula angustifolia on treatment of rat Alzheimer's disease
    • Zali H, Zamanian-Azodi M, Tavirani MR, Baghban AA-z. Protein drug targets of lavandula angustifolia on treatment of rat Alzheimer's disease. Iran J Pharm Res. 2015; 14:291.
    • (2015) Iran J Pharm Res. , vol.14 , pp. 291
    • Zali, H.1    Zamanian-Azodi, M.2    Tavirani, M.R.3    Baghban, A.A.-Z.4
  • 30
    • 84940040449 scopus 로고    scopus 로고
    • Expression of hepatic fibroblast growth factor 19 is enhanced in Primary Biliary Cirrhosis and correlates with severity of the disease
    • Wunsch E, Milkiewicz M, Wasik U, Trottier J, Kempińska-Podhorodecka A, Elias E, et al. Expression of hepatic fibroblast growth factor 19 is enhanced in Primary Biliary Cirrhosis and correlates with severity of the disease. Sci Rep 2015; 5:13462.
    • (2015) Sci Rep , vol.5 , pp. 13462
    • Wunsch, E.1    Milkiewicz, M.2    Wasik, U.3    Trottier, J.4    Kempińska-Podhorodecka, A.5    Elias, E.6
  • 31
    • 77955439381 scopus 로고    scopus 로고
    • Galectin-3-binding protein: a serological and histological assessment in accordance with hepatitis C-related liver fibrosis
    • Cheung KJ, Libbrecht L, Tilleman K, Deforce D, Colle I, Van Vlierberghe H. Galectin-3-binding protein: a serological and histological assessment in accordance with hepatitis C-related liver fibrosis. Eur J Gastroenterol Hepatol 2010; 22:1066-73.
    • (2010) Eur J Gastroenterol Hepatol , vol.22 , pp. 1066-1073
    • Cheung, K.J.1    Libbrecht, L.2    Tilleman, K.3    Deforce, D.4    Colle, I.5    Van Vlierberghe, H.6
  • 32
    • 33747830764 scopus 로고    scopus 로고
    • Hepatocellular carcinoma pathogenesis: from genes to environment
    • Farazi PA, DePinho RA. Hepatocellular carcinoma pathogenesis: from genes to environment. Nat Rev Cancer 2006; 6:674-87.
    • (2006) Nat Rev Cancer , vol.6 , pp. 674-687
    • Farazi, P.A.1    DePinho, R.A.2
  • 33
    • 85027939628 scopus 로고    scopus 로고
    • An introduction to effective use of enrichment analysis software
    • Tipney H, Hunter L. An introduction to effective use of enrichment analysis software. Hum Genomics 2010; 4:202-6.
    • (2010) Hum Genomics , vol.4 , pp. 202-206
    • Tipney, H.1    Hunter, L.2
  • 37
    • 77952573691 scopus 로고    scopus 로고
    • Molecular mechanisms of hepatic fibrosis in non-alcoholic steatohepatitis
    • Rombouts K, Marra F. Molecular mechanisms of hepatic fibrosis in non-alcoholic steatohepatitis. Dig Dis 2010; 28:229-35.
    • (2010) Dig Dis , vol.28 , pp. 229-235
    • Rombouts, K.1    Marra, F.2
  • 38
    • 77949311823 scopus 로고    scopus 로고
    • Nonalcoholic fatty liver disease: a review and update
    • Lewis JR, Mohanty SR. Nonalcoholic fatty liver disease: a review and update. Dig Dis Sci 2010; 55:560-78.
    • (2010) Dig Dis Sci , vol.55 , pp. 560-578
    • Lewis, J.R.1    Mohanty, S.R.2
  • 41
    • 84867370115 scopus 로고    scopus 로고
    • PPARs in liver diseases and cancer: epigenetic gegulation by MicroRNAs
    • 757803
    • Peyrou M, Ramadori P, Bourgoin L, Foti M. PPARs in liver diseases and cancer: epigenetic gegulation by MicroRNAs. PPAR Res 2012; 757803:13.
    • (2012) PPAR Res , pp. 13
    • Peyrou, M.1    Ramadori, P.2    Bourgoin, L.3    Foti, M.4
  • 42
    • 84928889791 scopus 로고    scopus 로고
    • Fibroblast growth factor receptor 4 polymorphism is associated with liver cirrhosis in hepatocarcinoma
    • Sheu MJ, Hsieh MJ, Chiang WL, Yang SF, Lee HL, Lee LM, et al. Fibroblast growth factor receptor 4 polymorphism is associated with liver cirrhosis in hepatocarcinoma. PLoS One 2015; 10: e0122961.
    • (2015) PLoS One , vol.10 , pp. e0122961
    • Sheu, M.J.1    Hsieh, M.J.2    Chiang, W.L.3    Yang, S.F.4    Lee, H.L.5    Lee, L.M.6
  • 43
    • 35648963655 scopus 로고    scopus 로고
    • Biomarkers of hepatic fibrosis, fibrogenesis and genetic pre-disposition pending between fiction and reality
    • Gressner OA, Weiskirchen R, Gressner AM. Biomarkers of hepatic fibrosis, fibrogenesis and genetic pre-disposition pending between fiction and reality. J Cell Mol Med 2007; 11:1031-51.
    • (2007) J Cell Mol Med , vol.11 , pp. 1031-1051
    • Gressner, O.A.1    Weiskirchen, R.2    Gressner, A.M.3
  • 44
    • 84866259297 scopus 로고    scopus 로고
    • Molecular mechanisms of liver injury and hepatocarcinogenesis: focusing on the role of stress-activated MAPK
    • 172894
    • Nakagawa H, Maeda S. Molecular mechanisms of liver injury and hepatocarcinogenesis: focusing on the role of stress-activated MAPK. Patholog Res Int 2012; 172894:14.
    • (2012) Patholog Res Int , pp. 14
    • Nakagawa, H.1    Maeda, S.2
  • 45
    • 0030760637 scopus 로고    scopus 로고
    • Cellular adhesion molecules: regulation and functional significance in the pathogenesis of liver diseases
    • Jaeschke H. Cellular adhesion molecules: regulation and functional significance in the pathogenesis of liver diseases. Am J Physiol 1997; 273: G602-11.
    • (1997) Am J Physiol , vol.273 , pp. G602-G611
    • Jaeschke, H.1
  • 46
    • 57749116378 scopus 로고    scopus 로고
    • Disrupted cell adhesion but not proliferation mediates cyst formation in polycystic liver disease
    • Waanders E, Van Krieken JH, Lameris AL, Drenth JP. Disrupted cell adhesion but not proliferation mediates cyst formation in polycystic liver disease. Mod Pathol 2008; 21:1293-302.
    • (2008) Mod Pathol , vol.21 , pp. 1293-1302
    • Waanders, E.1    Van Krieken, J.H.2    Lameris, A.L.3    Drenth, J.P.4
  • 47
    • 84938887319 scopus 로고    scopus 로고
    • Role of systemic inflammation in cirrhosis: From pathogenesis to prognosis
    • Dirchwolf M, Ruf AE. Role of systemic inflammation in cirrhosis: From pathogenesis to prognosis. World J Hepatol 2015; 7:1974-81.
    • (2015) World J Hepatol , vol.7 , pp. 1974-1981
    • Dirchwolf, M.1    Ruf, A.E.2
  • 48
    • 0017847392 scopus 로고
    • Plasma lipids and lipoproteins in liver disease
    • McIntyre N. Plasma lipids and lipoproteins in liver disease. Gut 1978; 19:526-30.
    • (1978) Gut , vol.19 , pp. 526-530
    • McIntyre, N.1
  • 50
    • 37749000841 scopus 로고    scopus 로고
    • Impact of lipoproteins on the biological activity and disposition of hydrophobic drugs: implications for drug discovery
    • Wasan KM, Brocks DR, Lee SD, Sachs-Barrable K, Thornton SJ. Impact of lipoproteins on the biological activity and disposition of hydrophobic drugs: implications for drug discovery. Nat Rev Drug Discov 2008; 7:84-99.
    • (2008) Nat Rev Drug Discov , vol.7 , pp. 84-99
    • Wasan, K.M.1    Brocks, D.R.2    Lee, S.D.3    Sachs-Barrable, K.4    Thornton, S.J.5
  • 51
    • 0023784438 scopus 로고
    • Serum prostacyclin stabilizing factor is identical to apolipoprotein AI (Apo AI). A novel function of Apo AI
    • Yui Y, Aoyama T, Morishita H, Takahashi M, Takatsu Y, Kawai C. Serum prostacyclin stabilizing factor is identical to apolipoprotein AI (Apo AI). A novel function of Apo AI. J Clin Invest 1988; 82:803.
    • (1988) J Clin Invest , vol.82 , pp. 803
    • Yui, Y.1    Aoyama, T.2    Morishita, H.3    Takahashi, M.4    Takatsu, Y.5    Kawai, C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.