GObar: A Gene Ontology based analysis and visualization tool for gene sets

BMC Bioinformatics

Volumn 6, Issue , 2005, Pages

  Lee, Jason S M ^a   Katari, Gurpreet ^a   Sachidanandam, Ravi ^a  

^a Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PROCESS; BIOLOGICAL SIGNIFICANCE; MICROARRAY EXPERIMENTS; MOLECULAR FUNCTION; PRE-MRNA SPLICING; UNDERLYING DISTRIBUTION; VARIOUS FUNCTIONS; VISUALIZATION TOOLS;

DISTRIBUTION FUNCTIONS; ENZYMES; PROBABILITY DISTRIBUTIONS; VISUALIZATION; WEBSITES;

GENES;

MESSENGER RNA;

ARTICLE; COMPUTER SYSTEM; CONTROLLED STUDY; DNA MICROARRAY; DROSOPHILA MELANOGASTER; GENE FUNCTION; GENETIC ANALYSIS; GENETIC IDENTIFICATION; GENOME ANALYSIS; GEOMETRY; HUMAN; INTERNET; NONHUMAN; PROBABILITY; SACCHAROMYCES CEREVISIAE; YEAST; ALGORITHM; ANIMAL; COMPUTER INTERFACE; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENETIC DATABASE; INFORMATION PROCESSING; INFORMATION RETRIEVAL; MOUSE; PROCEDURES; PROTEIN PROCESSING; STATISTICAL MODEL;

ALGORITHMS; ANIMALS; DATA COLLECTION; DATA DISPLAY; DATABASES, GENETIC; DROSOPHILA MELANOGASTER; GENE EXPRESSION PROFILING; HUMANS; INFORMATION STORAGE AND RETRIEVAL; INTERNET; MICE; MODELS, STATISTICAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROBABILITY; PROTEIN SPLICING; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 25444469954     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-189     Document Type: Article

References (13)

1. Gene Ontology Consortium website [http://www.geneontology.org]
2. GObar website [http://katahdin.cshl.org:9331/GO]
3. Smith B, Williams J, Schulze-Kremer S: The Ontology of Gene Ontology. Proceedings of AMIA Symposium 2003 [http://ontology.buffalo.edu/medo/Gene_Ontology.pdf].
4. Gene E: Entrez Gene: unified query environment for genes. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene].
5. FlyBase: FlyBase: A database of the drosophila genome. [http://www.flybase.org/].
6. SGD: Saccharomyces Genome Database. [http://www.yeastgenome.org/].
7. Graphviz website [http://www.graphviz.org/]
8. Sachidanandam R: Curated collection of splice sites in various genomes.. Unpublished
9. Burge CB, Padgett RA, Sharp PA: Evolutionary fates and origins of U12-type introns. Mol Cell 1998, 2(6):773-85.
10. Wu Q, Krainer AR: AT-AC Pre-mRNA Splicing Mechanisms and Conservation of Minor Introns in Voltage-Gated Ion Channel Genes. Molecular and Cellular Biology 1999, 19(5):3225-3236.
11. Beissbarth T, Speed TP: GOstat: Find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 2004, 20(9):1464-1465.
12. Beissbarth T, Speed TP: GOstat Website. [http://gostat.wehi.edu.au/].
13. The GO consortium: Amigo website. [http://www.godatabase.org/cgi-bin/amigo/go.cgi].