Population genetic diversity of the rare hardwood butternut (Juglans cinerea) in the northeastern USA

Tree Genetics and Genomes

Volumn 12, Issue 3, 2016, Pages

  Boraks, A ^a   Broders, K D ^a,b  

^a UNIVERSITY OF NEW HAMPSHIRE   (United States)

^b Veterinary Dentistry and Oral Surgery   (United States)

Author keywords

Butternut; Genetic; Juglans cinerea; Microsatellite; Riparian

Indexed keywords

EID: 84963805982     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-016-1002-2     Document Type: Article

References (51)

1. Allendorf FW (1986) Genetic drift and the loss of alleles versus heterozygosity. Zoo Biol 5:181–190
2. Altizer S, Harvell D, Friedle E (2003) Rapid evolutionary dynamics and disease threats to biodiversity. Trends Ecol Evo 18:589–596
3. Balloux F, Lugon-Moulin N (2002) The estimation of population differentiation with microsatellite markers. Mol Ecol 11:155–165
4. Boraks A, Broders K (2014) Butternut (Juglans cinerea) health, hybridization and recruitment in the northeastern United States. Can J Forest Res 44:1244–1252
5. Broders KD, Boland GJ (2011) Reclassification of the butternut canker fungus, Sirococcus clavigignenti-juglandacearum, into the genus Ophiognomonia. Fungal Biol 115:70–79
6. Broders K, Boraks A, Barbison L, Brown J, Boland GJ (2015) Recent insights into the pandemic disease butternut canker caused by the invasive pathogen Ophiognomonia clavigignenti‐juglandacearum. Forest Pathol 45:1–8
7. Clarke K, Ainsworth M (1993) A method of linking multivariate community structure to environmental variables. Mar Ecol-Prog Ser 92:205–219
8. Cornuet JM, Luikart G (1997) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001–2014
9. Crane HL, Reed CA, Wood MN (1937) Nut breeding. In: USDA yearbook of agriculture: 75th Congress, 1st Session. House document 28. US Government Printing Office, Washington DC, pp 827–889
10. Cummings-Carlson J, Guthmiller M (1993) Incidence and severity of butternut canker in Wisconsin in 1976 and 1992. Phytopathology 83:1352
11. Earl DA (2012) structure harvester: a website and program for visualizing structure output and implementing the Evanno method. Conserv Genet Resour 4:359–361
12. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14:2611–2620
13. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9. 3). J Hered 86:485–486
14. Hoban SM, McCleary TS, Schlarbaum SE, Romero-Severson J (2009) Geographically extensive hybridization between the forest trees American butternut and Japanese walnut. Biol Letters rsbl-2009
15. Hoban SM, Borkowski DS, Brosi SL et al (2010) Range-wide distribution of genetic diversity in the North American tree Juglans cinerea: a product of range shifts, not ecological marginality or recent population decline. Mol Ecol 19:4876–4891
16. Hoban SM, Schlarbaum SE, Brosi SL, Romero-Severson J (2012) A rare case of natural regeneration in butternut, a threatened forest tree, is parent and space limited. Conserv Genet 13:1447–1457
17. Hu LJ, Uchiyama K, Shen HL, Ide Y (2010) Multiple-scaled spatial genetic structures of Fraxinus mandshurica over a riparian–mountain landscape in Northeast China. Conserv Genet 11:77–87
18. Jump AS, Peñuelas J (2007) Extensive spatial genetic structure revealed by AFLP but not SSR molecular markers in the wind-pollinated tree, Fagus sylvatica. Mol Ecol 16:925–936
19. McCleary TS, Robichaud RL, Nuanes S et al (2009) Four cleaved amplified polymorphic sequence (CAPS) markers for the detection of the Juglans ailantifolia chloroplast in putatively native J. cinerea populations. Mol Ecol Resour 9:525–527
20. McKenna JR, Ostry ME, Woeste KE (2013) Resistance breeding to mitigate butternut canker disease. 24th USDA Interagency Research Forum on Invasive Species, January 8–11, 2013. Loews Annapolis Hotel, Annapolis
21. Michler CH, Pijut PM, Jacobs DF, Meilan R, Woeste KE, Ostry ME (2006) Improving disease resistance of butternut (Juglans cinerea), a threatened fine hardwood: a case for single-tree selection through genetic improvement and deployment. Tree Physiol 26:121–128
22. Morin R, Beaulieu J, Deslauriers M, Daoust G, Bousquet J (2000) Low genetic diversity at allozyme loci in Juglans cinerea. Can J Bot 78:1238–1243
23. Nair V, Kostichka CJ, Kuntz J (1979) Sirococcus clavigignenti-juglandacearum: an undescribed species causing canker on butternut. Mycologia 71:641–646
24. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583–590
25. Orchard LP, Kuntz JE, Kessler KJ Jr (1982) Reaction of Juglans species to butternut canker and implications for disease resistance. In Black Walnut for the Future, USDA Forest Service. North Central Forest Experiment Station. Gen. Tech. Rep. NC pp 27–31
26. Orlóci L (1978) Multivariate analysis in vegetation research. Junk, Den Haag, 451 pp
27. Ostry ME, Pijut PM (2000) Butternut: an underused resource in North America. HortTechnology 10:302–306
28. Ostry M, Woeste K (2004) Spread of butternut canker in North America, host range, evidence of resistance within butternut populations and conservation genetics. In: Michler CH, Pijut PM, Van Sambeek JW, Coggeshall MV, Seifert J, Woeste K, Overton R, Ponder F Jr (eds) Black walnut in a new century, proceedings of the 6th Walnut Council research symposium; 2004 July 25–28; Lafayette, IN. Gen. Tech. Rep. NC-243. St. Paul, MN: U.S. Department of Agriculture, Forest Service, North Central Research Station. 114–120. 188 pp
29. Parks A, Jenkins M, Woeste K, Ostry M (2013) Conservation status of a threatened tree species: establishing a baseline for restoration of Juglans cinerea L. in the southern Appalachian Mountains, USA. Nat Area J 33:413–426
30. Parks A, Jenkins M, Ostry M, Zhao P, Woeste K (2014) Biotic and abiotic factors affecting the genetic structure and diversity of butternut in the southern Appalachian Mountains, USA. Tree Genet Genomes 10:541–554
31. Peakall R, Smouse PE (2006) GenAlEx 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295
32. Poisson G, Ursic M (2013) Recovery strategy for butternut (Juglans cinerea) in Ontario. Ontario Recovery Stategy Series. Prepared for the Ontario Ministry of Natural Resources, Peterborough, Ontario. Adoption of the Recovery Strategy for the Butternut (Juglans cinerea) in Canada (Environment Canada 2010)
33. Pollegioni P, Woeste K, Mugnozza GS, Malvolti ME (2009) Retrospective identification of hybridogenic walnut plants by SSR fingerprinting and parentage analysis. Mol Breeding 24:321–335
34. Pritchard J, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959
35. Pritchard J, Wen W, Falush D (2003) Documentation for structure software: version 2. http://pritchardlab.stanford.edu. Accessed 23 October 2015
36. Rink G (1990) Juglans cinerea L. butternut. In Silvics of North America. Vol. 2. Hardwoods. Tech. Coords. R.M. Burns and B.H. Honkala. USDA For. Serv. Agric. Handbook 654, Washington, DC, 386–390
37. Ross-Davis A, Woeste K (2007) Microsatellite markers for Juglans cinerea L. and their utility in other Juglandaceae species. Conserv Genet 9:465–469
38. Ross-Davis A, Ostry M, Woeste K (2008) Genetic diversity of butternut (Juglans cinerea) and implications for conservation. Can J For Res 38:899–907
39. Rousset F (2008) Genepop’007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Res 8:103–106
40. Schultz J (2003) Conservation assessment for butternut or white walnut (Juglans cinerea L.). USDA For. Serv., Eastern Region. http://www.fs.usda.gov/Internet/FSE_DOCUMENTS/fsm91_054130.pdf
41. Shannon C, Weaver W (1949) The mathematical theory of communication. University of Illinois Press, Urbana
42. Smouse PE, Long JC (1992) Matrix correlation analysis in anthropology and genetics. Am J Phys Anthropol 35:187–213
43. Smouse P, Long J, Sokal R (1986) Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Syst Zool 35:627–632
44. Sork VL, Smouse PE (2006) Genetic analysis of landscape connectivity in tree populations. Landscape Ecol 21:821–836
45. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538
46. Victory E (2006) Genetic homogeneity in Juglans nigra (Juglandaceae) at nuclear microsatellites. Am J Bot 93:118–126
47. Ward M, Dick CW, Gribel R, Lowe J (2005) To self, or not to self… a review of outcrossing and pollen-mediated gene flow in neotropical trees. Heredity 95:246–254
48. Weir B, Cockerham C (1984) Estimating f-statistics for the analysis of population structure. Evolution 38:1358–1370
49. Williams M (1992) Americans and their forests: a historical geography. Cambridge University Press, New York
50. Wright S (1931) Evolution in Mendelian populations. Genetics 16:97–159
51. Yao X, Zhang J, Ye Q, Huang H (2011) Fine-scale spatial genetic structure and gene flow in a small, fragmented population of Sinojackia rehderiana (Styracaceae), an endangered tree species endemic to China. Plant Biol 13:401–410