Multiple-scaled spatial genetic structures of Fraxinus mandshurica over a riparian-mountain landscape in Northeast China

Conservation Genetics

Volumn 11, Issue 1, 2010, Pages 77-87

  Hu, Li Jiang ^a,b   Uchiyama, Kentaro ^a   Shen, Hai Long ^b   Ide, Yuji ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NORTHEAST FORESTRY UNIVERSITY   (China)

Author keywords

Fraxinus mandshurica; Landscape connectivity; Nuclear microsatellites; Riparian forest ecosystem; Spatial genetic structure

Indexed keywords

CONNECTIVITY; CONSERVATION GENETICS; DECIDUOUS TREE; ENDANGERED SPECIES; GENE FLOW; GENETIC STRUCTURE; HABITAT FRAGMENTATION; HYDROCHORY; LANDSCAPE ECOLOGY;

CHINA;

FRAXINUS; FRAXINUS MANDSHURICA;

EID: 74749100263     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-009-0004-0     Document Type: Article

References (59)

1. Aizawa M, Yoshimaru H, Saito H, Katsuki T, Kawahara T, Kitamura K, Shi F, Kaji M (2007) Phylogeography of a northeast Asian spruce, Picea jezoensis, inferred from genetic variation observed in organelle DNA markers. Mol Ecol 16: 3393-3405.
2. Arens P, Coops H, Jansen J, Vosman B (1998) Molecular genetic analysis of black poplar (Populus nigra L.) along Dutch rivers. Mol Ecol 7: 11-18.
3. Bacles CFE, Burczyk J, Lowe AJ, Ennos RA (2005) Historical and contemporary mating patterns in remnant populations of the forest tree Fraxinus excelsior L. Evolution 59: 979-990.
4. Bonnet E, van de Peer Y (2002) ZT: a software tool for simple and partial Mantel tests. J Stat Softw 7: 1-12.
5. Brachet S, Jubier MF, Richard M, Jung-Muller B, Frascaria-Lacoste N (1999) Rapid identification of microsatellite loci using 5' anchored PCR in the common ash Fraxinus excelsior. Mol Ecol 8: 160-163.
6. Chung MY, Nason JD, Epperson BK, Chung MG (2003) Temporal aspects of the fine-scale genetic structure in a population of Cinnamomum insularimontanum (Lauraceae). Heredity 90: 98-106.
7. Dacasa Rüdinger MC, Glaeser J, Hebel I, Dounavi A (2008) Genetic Structures of common ash (Fraxinus excelsior L.) populations in Germany at sites differing in water regimes. Can J For Res 38: 1190-1210.
8. DeWoody J, Nason JD, Smith M (2004) Inferring demographic processes from the genetic structure of a metapopulation of Boltonia decurrens (Asteraceae). Conserv Genet 5: 603-617.
9. Dupanloup I, Schneider S, Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Mol Ecol 11: 2571-2581.
10. Fu LG (1992) China Plant Red Data Book: rare and endangered plants, vol 1. Chinese Science Press, Beijing.
11. Goto S, Shimatani K, Yoshimaru H, Takahashi Y (2006) Fat-tailed gene flow in the dioecious canopy tree species Fraxinus mandshurica var. japonica revealed by microsatellites. Mol Ecol 15: 2985-2996.
12. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2. 9. 3). http://www2.unil.ch/popgen/softwares/fstat.htm. Accessed 31 July 2009.
13. Hampe A (2004) Extensive hydrochory uncouples spatiotemporal patterns of seedfall and seedling recruitment in a 'bird-dispersed' riparian tree. J Ecol 92: 797-807.
14. Hamrick JL, Godt MJ, Sherman-Broyles SL (1992) Factor influencing levels of genetic diversity in woody plant species. New For 6: 95-124.
15. Hardesty BD, Dick CW, Kremer A, Hubbell S, Bermingham E (2005) Spatial genetic structure of Simarouba amara Aubl. (Simaroubaceae), a dioecious, animal-dispersed, Neotropical tree, on Barro Colorado Island, Panama. Heredity 95: 290-297.
16. Hastings A, Harrison S (1994) Metapopulation dynamics and genetics. Annu Rev Ecol Syst 25: 167-188.
17. Heuertz M, Vekemans X, Hausman JF, Palada M, Hardy OJ (2003) Estimating seed vs. pollen dispersal from spatial genetic structure in the common ash. Mol Ecol 12: 2483-2495.
18. Heuertz M, Fineschi S, Anzidei M, Pastorelli R, Salvini D, Paule L, Frascaria-Lacoste N, Hardy OJ, Vekemans X, Vendramin GG (2004) Chloroplast DNA variation and postglacial recolonization of common ash (Fraxinus excelsior L.) in Europe. Mol Ecol 13: 3437-3452.
19. Hobbs RJ (1992) The role of corridors in conservation: solution or bandwagon? Trends Ecol Evol 7: 389-392.
20. Holderegger R, Wagner HH (2008) Landscape genetics. Bioscience 58: 199-207.
21. Hu L-J, Uchiyama K, Shen H-L, Saito Y, Tsuda Y, Ide Y (2008) Nuclear DNA microsatellites reveal genetic variation but a lack of phylogeographical structure in an endangered species, Fraxinus mandshurica, across North-east China. Ann Bot 102: 195-205.
22. Hughes JM (2007) Constraints on recovery: using molecular methods to study connectivity of aquatic biota in rivers and streams. Freshw Biol 52: 616--631.
23. Imbert E, Lefèvre F (2003) Dispersal and gene flow of Populus nigra along a dynamic river system. J Ecol 91: 447-456.
24. Jacquemyn H, Honnay O, van Looy K, Breyne P (2006) Spatiotemporal structure of genetic variation of a spreading plant metapopulation on dynamic riverbanks along the Meuse River. Heredity 96: 471-478.
25. Jansson R, Nilsson C, Renöfält B (2000) Fragmentation of riparian floras in rivers with multiple dams. Ecology 81: 899-903.
26. Jansson R, Zinko U, Merritt DM, Nilsson C (2005) Hydrochory increases riparian plant species richness: a comparison between a free-flowing and a regulated river. J Ecol 93: 1094-1103.
27. Jansson R, Nilsson C, Malmqvist B (2007) Restoring freshwater ecosystems in riverine landscapes: the roles of connectivity and recovery processes. Freshw Biol 52: 589-596.
28. Kitamoto N, Honjo M, Ueno S, Takenaka A, Tsumura Y, Washitani I (2005) Spatial genetic structure among and within populations of Primula sieboldii growing beside separate streams. Mol Ecol 14: 149-157.
29. Kong D-M (2004) Somatic embryogenesis and development of somatic and zygotic embryos of Fraxinus mandshurica. PhD Dissertation, Northeast Forestry University, China (in Chinese with English abstract).
30. Kudoh H, Whigham DF (1997) Microgeographic genetic structure and gene flow in Hibiscus moscheutos (Malvaceae) populations. Am J Bot 84: 1285-1293.
31. Lefort F, Brachet S, Frascaria-Lacoste N, Edwards KJ, Douglas GC (1999) Identification and characterisation of microsatellite loci in ash (Fraxinus excelsior L.) and their conservation in the olive family (Oleaceae). Mol Ecol 8: 1088-1091.
32. Legionnet A, Lefèvre F (1996) Genetic variation of the riparian pioneer tree species Populus nigra L. Study of population structure based on isozymes. Heredity 77: 629-637.
33. Lian C-L, Oishi R, Miyashita N, Nara K, Nakaya H, Wu B, Zhou Z, Hogetsu T (2003) Genetic structure and reproduction dynamics of Salix reinii during primary succession on Mount Fuji, as revealed by nuclear and chloroplast microsatellite analysis. Mol Ecol 12: 609-618.
34. Liu Y, Wang Y, Huang H (2006) High interpopulation genetic differentiation and unidirectional linear migration patterns in Myricaria laxiflora (Tamaricaceae), an endemic riparian plant in the Three Gorges Valley of the Yangtze river. Am J Bot 93: 206-215.
35. Magri D, Vendramin GG, Comps B, Dupanloup I, Geburek T, Gömöry D, Latałowa M, Litt T, Paule L, Roure JM, Tantau I, van der Knaap WO, Petit RJ, de Beaulieu J-L (2006) A new scenario for the quaternary history of European beech populations: palaeobotanical evidence and genetic consequences. New Phytol 171: 199-221.
36. Manel S, Schwartz MK, Luikart G, Taberlet P (2003) Landscape genetics: combining landscape ecology and population genetics. Trends Ecol Evol 18: 189-197.
37. Manni F, Guérard E, Heyer E (2004) Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by using Monmonier's algorithm. Hum Biol 76: 173-190.
38. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
39. Mu L, Radke J (2009) A weighted difference barrier method in landscape genetics. J Geogr Syst 11: 141-154.
40. Naiman RJ, Décamps H (1997) The ecology of interfaces: riparian zones. Annu Rev Ecol Syst 28: 621-658.
41. Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenic trees from molecular data. J Mol Evol 19: 153-170.
42. Ning B, Gong W-F, Kong D, Sun Y, Fan W-Y (2006) GIS-based analysis on the change of forest resources in Maoershan experimental forest farm of Shangzhi City, Heilongjiang Province. J Northeast For Univ 49: 32-34 (in Chinese with English abstract).
43. O'Connell LM, Mosseler A, Rajora OP (2006) Impacts of forest fragmentation on the mating system and genetic diversity of white spruce (Picea glauca) at the landscape level. Heredity 97: 418-426.
44. Peakall R, Smouse PE (2006) GenAlEx 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295. http://www.anu.edu.au/BoZo/GenAlEx/genalex_download.php. Accessed 31 July 2009.
45. Pospíšková M, Šálková I (2006) Population structure and parentage analysis of black poplar along the Morava River. Can J For Res 36: 1067-1076.
46. Rice WR (1989) Analyzing tables of statistical tests. Evolution 43: 223-225.
47. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145: 1219-1228.
48. Sato T, Isagi Y, Sakio H, Osumi K, Goto S (2006) Effect of gene flow on spatial genetic structure in the riparian canopy tree Cercidiphyllum japonicum revealed by microsatellite analysis. Heredity 96: 79-84.
49. Smouse PE, Peakall R (1999) Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity 82: 561-573.
50. Sork VL, Smouse PE (2006) Genetic analysis of landscape connectivity in tree populations. Landsc Ecol 21: 821-836.
51. Storfer A, Murphy MA, Evans JS, Goldberg CS, Robinson S, Spear SF, Dezzani R, Delmelle E, Vierling L, Waits LP (2007) Putting the landscape in landscape genetics. Heredity 98: 128-142.
52. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonization route in Europe. Mol Ecol 7: 453-464.
53. Tero N, Aspi J, Siikamäki P, Jäkäläniemi A, Tuomi J (2003) Genetic structure and gene flow in a metapopulation of an endangered plant species, Silene tatarica. Mol Ecol 12: 2073-2085.
54. Thebaud C, Debussche M (1991) Rapid invasion of Fraxinus ornus L. along the Hérault River system in southern France: the importance of dispersal by water. J Biogeogr 18: 7-12.
55. Verdú M, González-Martínez SC, Montilla AI, Mateu I, Pannell JR (2006) Ovule discounting in an outcrossing, cryptically dioecious tree. Evolution 60: 2056-2063.
56. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
57. Wright S (1943) Isolation by distance. Genetics 28: 114-138.
58. Wu Z-Y (1980) Vegetation of China. Chinese Science Press, Beijing, China (in Chinese).
59. Yu G, Chen X, Ni J, Cheddadi R, Guiot J, Han H, Harrison SP, Huang C, Ke M, Kong Z, Li S, Li W, Liew P, Liu G, Liu J, Liu Q, Liu K-B, Prentice IC, Qui W, Ren G, Song C, Sugita S, Sun X, Tang L, van Campo E, Xia Y, Xu Q, Yan S, Yang X, Zhao J, Zheng Z (2000) Palaeovegetation of China: a pollen data-based synthesis for the mid-Holocene and last glacial maximum. J Biogeogr 27: 635-664.