MicroRNA deep sequencing reveals chamber-specific miR-208 family expression patterns in the human heart

International Journal of Cardiology

Volumn 211, Issue , 2016, Pages 43-48

  Kakimoto, Yu ^a   Tanaka, Masayuki ^b   Kamiguchi, Hiroshi ^b   Hayashi, Hideki ^b   Ochiai, Eriko ^a   Osawa, Motoki ^a  

^a TOKAI UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b TOKAI UNIVERSITY   (Japan)

Author keywords

Atrium; Deep sequencing; MicroRNA; miR 208; Myosin heavy chain; Ventricle

Indexed keywords

MICRORNA; MICRORNA 1; MICRORNA 208; MICRORNA 208A 3P; MICRORNA 208A 5P; MICRORNA 208B 3P; MICRORNA 208B 5P; MYOSIN HEAVY CHAIN ALPHA; MYOSIN HEAVY CHAIN BETA; UNCLASSIFIED DRUG; MIRN208 MICRORNA, HUMAN;

ADULT; AGED; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; GENE EXPRESSION; GENE EXPRESSION REGULATION; HEART; HEART LEFT ATRIUM; HEART LEFT VENTRICLE; HUMAN; HUMAN TISSUE; MALE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RNA SEQUENCE; UPREGULATION; BIOSYNTHESIS; GENETICS; HEART ATRIUM; HEART VENTRICLE; METABOLISM; MIDDLE AGED; PATHOLOGY; PHYSIOLOGY; PROCEDURES; SEQUENCE ANALYSIS;

ADULT; AGED; FEMALE; GENE EXPRESSION REGULATION; HEART; HEART ATRIA; HEART VENTRICLES; HUMANS; MALE; MICRORNAS; MIDDLE AGED; REAL-TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, RNA;

EID: 84962834011     PISSN: 01675273     EISSN: 18741754     Source Type: Journal    
DOI: 10.1016/j.ijcard.2016.02.145     Document Type: Article

References (44)

1. B. Maisch Local cardiac responses - alternative methods of control Am. J. Cardiol. 67 1991 6C 10C
2. J. Asp, J. Synnergren, M. Jonsson, G. Dellgren, and A. Jeppsson Comparison of human cardiac gene expression profiles in paired samples of right atrium and left ventricle collected in vivo Physiol. Genomics 44 2012 89 98
3. A.S. Barth, S. Merk, E. Arnoldi, L. Zwermann, P. Kloos, M. Gebauer, and et al. Functional profiling of human atrial and ventricular gene expression Pflugers Arch. 450 2005 201 208
4. V. Ambros The functions of animal microRNAs Nature 432 2004 350 355
5. E.E. Creemers, A.J. Tijsen, and Y.M. Pinto Circulating microRNAs: novel biomarkers and extracellular communicators in cardiovascular disease? Circ. Res. 110 2012 483 495
6. T. Thum, P. Galuppo, C. Wolf, J. Fiedler, S. Kneitz, L.W. van Laake, and et al. MicroRNAs in the human heart: a clue to fetal gene reprogramming in heart failure Circulation 116 2007 258 267
7. R. Maqbool, and M. Ul Hussain MicroRNAs and human diseases: diagnostic and therapeutic potential Cell Tissue Res. 358 2014 1 15
8. H. Nishi, T. Sakaguchi, S. Miyagawa, Y. Yoshikawa, S. Fukushima, S. Saito, and et al. Impact of microRNA expression in human atrial tissue in patients with atrial fibrillation undergoing cardiac surgery PLoS One 8 2013 e73397
9. H. Liu, G.X. Chen, M.Y. Liang, H. Qin, J. Rong, J.P. Yao, and et al. Atrial fibrillation alters the microRNA expression profiles of the left atria of patients with mitral stenosis BMC Cardiovasc. Disord. 14 2014 10
10. X. Chen, Y. Ba, L. Ma, X. Cai, Y. Yin, K. Wang, and et al. Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases Cell Res. 18 2008 997 1006
11. P.S. Mitchell, R.K. Parkin, E.M. Kroh, B.R. Fritz, S.K. Wyman, E.L. Pogosova-Agadjanyan, and et al. Circulating microRNAs as stable blood-based markers for cancer detection Proc. Natl. Acad. Sci. U. S. A. 105 2008 10513 10518
12. Y. Kakimoto, H. Kamiguchi, E. Ochiai, F. Satoh, and M. Osawa MicroRNA stability in postmortem FFPE tissues: quantitative analysis using autoptic samples from acute myocardial infarction patients PLoS One 10 2015 e0129338
13. K.O. Mutz, A. Heilkenbrinker, M. Lonne, J.G. Walter, and F. Stahl Transcriptome analysis using next-generation sequencing Curr. Opin. Biotechnol. 24 2013 22 30
14. M. David, M. Dzamba, D. Lister, L. Ilie, and M. Brudno SHRiMP2: sensitive yet practical SHort read mapping Bioinformatics 27 2011 1011 1012
15. K.J. Livak, and T.D. Schmittgen Analysis of relative gene expression data using real-time quantitative PCR and the 2(- Delta Delta C(T)) Method Methods 25 2001 402 408 San Diego, Calif
16. H. Michael, and W.P. Ross Histology: A Text and Atlas, With Correlated Cell and Molecular Biology Sixth Ed 2010 Lippincott Williams and Wilkins
17. J.F. Hoh, P.A. McGrath, and P.T. Hale Electrophoretic analysis of multiple forms of rat cardiac myosin: effects of hypophysectomy and thyroxine replacement J. Mol. Cell. Cardiol. 10 1978 1053 1076
18. E. Morkin Control of cardiac myosin heavy chain gene expression Microsc. Res. Tech. 50 2000 522 531
19. P.J. Reiser, and W.O. Kline Electrophoretic separation and quantitation of cardiac myosin heavy chain isoforms in eight mammalian species Am. J. Phys. 274 1998 H1048 H1053
20. A.W. Everett Isomyosin expression in human heart in early pre- and post-natal life J. Mol. Cell. Cardiol. 18 1986 607 615
21. M. Kurabayashi, H. Tsuchimochi, I. Komuro, R. Takaku, and Y. Yazaki Molecular cloning and characterization of human cardiac alpha- and beta-form myosin heavy chain complementary DNA clones. Regulation of expression during development and pressure overload in human atrium J. Clin. Invest. 82 1988 524 531
22. T.J. Herron, and K.S. McDonald Small amounts of alpha-myosin heavy chain isoform expression significantly increase power output of rat cardiac myocyte fragments Circ. Res. 90 2002 1150 1152
23. V.L. Rundell, V. Manaves, A.F. Martin, and P.P. de Tombe Impact of beta-myosin heavy chain isoform expression on cross-bridge cycling kinetics Am. J. Physiol. Heart Circ. Physiol. 288 2005 H896 H903
24. F.S. Korte, T.J. Herron, M.J. Rovetto, and K.S. McDonald Power output is linearly related to MyHC content in rat skinned myocytes and isolated working hearts Am. J. Physiol. Heart Circ. Physiol. 289 2005 H801 H812
25. B.D. Lowes, W. Minobe, W.T. Abraham, M.N. Rizeq, T.J. Bohlmeyer, R.A. Quaife, and et al. Changes in gene expression in the intact human heart. Downregulation of alpha-myosin heavy chain in hypertrophied, failing ventricular myocardium J. Clin. Invest. 100 1997 2315 2324
26. K. Nakao, W. Minobe, R. Roden, M.R. Bristow, and L.A. Leinwand Myosin heavy chain gene expression in human heart failure J. Clin. Invest. 100 1997 2362 2370
27. P. Ellinghaus, R.J. Scheubel, D. Dobrev, U. Ravens, J. Holtz, J. Huetter, and et al. Comparing the global mRNA expression profile of human atrial and ventricular myocardium with high-density oligonucleotide arrays J. Thorac. Cardiovasc. Surg. 129 2005 1383 1390
28. S. Miyata, W. Minobe, M.R. Bristow, and L.A. Leinwand Myosin heavy chain isoform expression in the failing and nonfailing human heart Circ. Res. 86 2000 386 390
29. A.M. Monteys, R.M. Spengler, J. Wan, L. Tecedor, K.A. Lennox, Y. Xing, and et al. Structure and activity of putative intronic miRNA promoters RNA 16 2010 495 505
30. H. Holm, D.F. Gudbjartsson, D.O. Arnar, G. Thorleifsson, G. Thorgeirsson, H. Stefansdottir, and et al. Several common variants modulate heart rate, PR interval and QRS duration Nat. Genet. 42 2010 117 122
31. H. Holm, D.F. Gudbjartsson, P. Sulem, G. Masson, H.T. Helgadottir, C. Zanon, and et al. A rare variant in MYH6 is associated with high risk of sick sinus syndrome Nat. Genet. 43 2011 316 320
32. T. Ishikawa, C.J. Jou, A. Nogami, S. Kowase, C.B. Arrington, S.M. Barnett, and et al. Novel mutation in the alpha-myosin heavy chain gene is associated with sick sinus syndrome Circ. Arrhythm. Electrophysiol. 8 2015 400 408
33. T.E. Callis, K. Pandya, H.Y. Seok, R.H. Tang, M. Tatsuguchi, Z.P. Huang, and et al. MicroRNA-208a is a regulator of cardiac hypertrophy and conduction in mice J. Clin. Invest. 119 2009 2772 2786
34. K.H,. Slagsvold, A.B. Johnsen, O. Rognmo, M.A. Hoydal, U. Wisloff, and A. Wahba Mitochondrial respiration and microRNA expression in right and left atrium of patients with atrial fibrillation Physiol. Genomics 46 2014 505 511
35. M. Satoh, Y. Minami, Y. Takahashi, T. Tabuchi, and M. Nakamura Expression of microRNA-208 is associated with adverse clinical outcomes in human dilated cardiomyopathy J. Card. Fail. 16 2010 404 410
36. E. van Rooij, L.B. Sutherland, X. Qi, J.A. Richardson, J. Hill, and E.N. Olson Control of stress-dependent cardiac growth and gene expression by a microRNA Science 316 2007 575 579
37. E. van Rooij, D. Quiat, B.A. Johnson, L.B. Sutherland, X. Qi, J.A. Richardson, and et al. A family of microRNAs encoded by myosin genes governs myosin expression and muscle performance Dev. Cell 17 2009 662 673
38. R.S. Nagalingam, N.R. Sundaresan, M.P. Gupta, D.L. Geenen, R.J. Solaro, and M. Gupta A cardiac-enriched microRNA, miR-378, blocks cardiac hypertrophy by targeting Ras signaling J. Biol. Chem. 288 2013 11216 11232
39. P.C. Kahr, I. Piccini, L. Fabritz, B. Greber, H. Scholer, H.H. Scheld, and et al. Systematic analysis of gene expression differences between left and right atria in different mouse strains and in human atrial tissue PLoS One 6 2011 e26389
40. K.H. Slagsvold, A.B. Johnsen, O. Rognmo, M. Hoydal, U. Wisloff, and A. Wahba Comparison of left versus right atrial myocardium in patients with sinus rhythm or atrial fibrillation - an assessment of mitochondrial function and microRNA expression Phys. Rep. 2 2014 e12124
41. C. Vacchi-Suzzi, F. Hahne, P. Scheubel, M. Marcellin, V. Dubost, M. Westphal, and et al. Heart structure-specific transcriptomic atlas reveals conserved microRNA-mRNA interactions PLoS One 8 2013 e52442
42. R. Tabibiazar, R.A. Wagner, A. Liao, and T. Quertermous Transcriptional profiling of the heart reveals chamber-specific gene expression patterns Circ. Res. 93 2003 1193 1201
43. J. Hansen, I. Lesnikova, A.M. Funder, and J. Banner DNA and RNA analysis of blood and muscle from bodies with variable postmortem intervals Forensic Sci. Med. Pathol. 10 2014 322 328
44. P. Preece, and N.J. Cairns Quantifying mRNA in postmortem human brain: influence of gender, age at death, postmortem interval, brain pH, agonal state and inter-lobe mRNA variance Brain Res. Mol. Brain Res. 118 2003 60 71