메뉴 건너뛰기




Volumn 113, Issue 11, 2016, Pages 3054-3059

The retrovirus HTLV-1 inserts an ectopic CTCF-binding site into the human genome

Author keywords

CTCF; Epigenetics; HTLV 1; Latency; Retrovirus

Indexed keywords

TRANSCRIPTION FACTOR CTCF; BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR; CCCTC-BINDING FACTOR; CHROMATIN; DNA; HBZ PROTEIN, HUMAN T-CELL LEUKEMIA VIRUS TYPE I; PROTEIN BINDING; PX PROTEIN, HUMAN T-LYMPHOTROPIC VIRUS 1; REPRESSOR PROTEIN; TRANSCRIPTION FACTOR; VIRAL PROTEIN; VIRUS DNA;

EID: 84962522977     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1423199113     Document Type: Article
Times cited : (104)

References (38)
  • 1
    • 0242515763 scopus 로고    scopus 로고
    • Spread of HTLV-I between lymphocytes by virus-induced polarization of the cytoskeleton
    • Igakura T, et al. (2003) Spread of HTLV-I between lymphocytes by virus-induced polarization of the cytoskeleton. Science 299(5613):1713-1716.
    • (2003) Science , vol.299 , Issue.5613 , pp. 1713-1716
    • Igakura, T.1
  • 2
    • 33947578030 scopus 로고    scopus 로고
    • Human T-cell leukaemia virus type 1 (HTLV-1) infectivity and cellular transformation
    • Matsuoka M, Jeang KT (2007) Human T-cell leukaemia virus type 1 (HTLV-1) infectivity and cellular transformation. Nat Rev Cancer 7(4):270-280.
    • (2007) Nat Rev Cancer , vol.7 , Issue.4 , pp. 270-280
    • Matsuoka, M.1    Jeang, K.T.2
  • 3
    • 31444442856 scopus 로고    scopus 로고
    • HTLV-I basic leucine zipper factor gene mRNA supports proliferation of adult T cell leukemia cells
    • Satou Y, Yasunaga J, Yoshida M, Matsuoka M (2006) HTLV-I basic leucine zipper factor gene mRNA supports proliferation of adult T cell leukemia cells. Proc Natl Acad Sci USA 103(3):720-725.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.3 , pp. 720-725
    • Satou, Y.1    Yasunaga, J.2    Yoshida, M.3    Matsuoka, M.4
  • 4
    • 63849171483 scopus 로고    scopus 로고
    • The immune control of HTLV-1 infection: Selection forces and dynamics
    • Bangham CR, et al. (2009) The immune control of HTLV-1 infection: Selection forces and dynamics. Front Biosci (Landmark Ed) 14:2889-2903.
    • (2009) Front Biosci (Landmark Ed) , vol.14 , pp. 2889-2903
    • Bangham, C.R.1
  • 5
    • 0036707582 scopus 로고    scopus 로고
    • 5′-long terminal repeat-selective CpG methylation of latent human T-cell leukemia virus type 1 provirus in vitro and in vivo
    • Koiwa T, et al. (2002) 5′-long terminal repeat-selective CpG methylation of latent human T-cell leukemia virus type 1 provirus in vitro and in vivo. J Virol 76(18): 9389-9397.
    • (2002) J Virol , vol.76 , Issue.18 , pp. 9389-9397
    • Koiwa, T.1
  • 6
    • 27744496259 scopus 로고    scopus 로고
    • Silencing of human T-cell leukemia virus type i gene transcription by epigenetic mechanisms
    • Taniguchi Y, et al. (2005) Silencing of human T-cell leukemia virus type I gene transcription by epigenetic mechanisms. Retrovirology 2:64.
    • (2005) Retrovirology , vol.2 , pp. 64
    • Taniguchi, Y.1
  • 7
    • 33646595661 scopus 로고    scopus 로고
    • Enhancement of infectivity and persistence in vivo by HBZ, a natural antisense coded protein of HTLV-1
    • Arnold J, et al. (2006) Enhancement of infectivity and persistence in vivo by HBZ, a natural antisense coded protein of HTLV-1. Blood 107(10):3976-3982.
    • (2006) Blood , vol.107 , Issue.10 , pp. 3976-3982
    • Arnold, J.1
  • 8
    • 84899415536 scopus 로고    scopus 로고
    • CTCF: An architectural protein bridging genome topology and function
    • Ong CT, Corces VG (2014) CTCF: An architectural protein bridging genome topology and function. Nat Rev Genet 15(4):234-246.
    • (2014) Nat Rev Genet , vol.15 , Issue.4 , pp. 234-246
    • Ong, C.T.1    Corces, V.G.2
  • 9
    • 33947201809 scopus 로고    scopus 로고
    • Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
    • Kim TH, et al. (2007) Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128(6):1231-1245.
    • (2007) Cell , vol.128 , Issue.6 , pp. 1231-1245
    • Kim, T.H.1
  • 10
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski A, et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129(4):823-837.
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1
  • 11
    • 60149095014 scopus 로고    scopus 로고
    • Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
    • Cuddapah S, et al. (2009) Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 19(1):24-32.
    • (2009) Genome Res , vol.19 , Issue.1 , pp. 24-32
    • Cuddapah, S.1
  • 12
    • 84923771297 scopus 로고    scopus 로고
    • CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
    • Narendra V, et al. (2015) CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation. Science 347(6225):1017-1021.
    • (2015) Science , vol.347 , Issue.6225 , pp. 1017-1021
    • Narendra, V.1
  • 13
    • 84939802036 scopus 로고    scopus 로고
    • Getting the genome in shape: The formation of loops, domains and compartments
    • Bouwman BA, de Laat W (2015) Getting the genome in shape: The formation of loops, domains and compartments. Genome Biol 16:154.
    • (2015) Genome Biol , vol.16 , pp. 154
    • Bouwman, B.A.1    De Laat, W.2
  • 14
    • 0034713275 scopus 로고    scopus 로고
    • CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
    • Hark AT, et al. (2000) CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus. Nature 405(6785):486-489.
    • (2000) Nature , vol.405 , Issue.6785 , pp. 486-489
    • Hark, A.T.1
  • 15
    • 0034713375 scopus 로고    scopus 로고
    • Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
    • Bell AC, Felsenfeld G (2000) Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Nature 405(6785):482-485.
    • (2000) Nature , vol.405 , Issue.6785 , pp. 482-485
    • Bell, A.C.1    Felsenfeld, G.2
  • 16
    • 84919949716 scopus 로고    scopus 로고
    • A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
    • Rao SS, et al. (2014) A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159(7):1665-1680.
    • (2014) Cell , vol.159 , Issue.7 , pp. 1665-1680
    • Rao, S.S.1
  • 17
    • 84939246295 scopus 로고    scopus 로고
    • CRISPR inversion of CTCF sites alters genome topology and enhancer/promoter function
    • Guo Y, et al. (2015) CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function. Cell 162(4):900-910.
    • (2015) Cell , vol.162 , Issue.4 , pp. 900-910
    • Guo, Y.1
  • 18
    • 84951567954 scopus 로고    scopus 로고
    • CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
    • Tang Z, et al. (2015) CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription. Cell 163(7):1611-1627.
    • (2015) Cell , vol.163 , Issue.7 , pp. 1611-1627
    • Tang, Z.1
  • 19
    • 84863393570 scopus 로고    scopus 로고
    • Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
    • Schmidt D, et al. (2012) Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell 148(1-2):335-348.
    • (2012) Cell , vol.148 , Issue.1-2 , pp. 335-348
    • Schmidt, D.1
  • 20
    • 84901829406 scopus 로고    scopus 로고
    • Epigenetic regulation of EBV persistence and oncogenesis
    • Tempera I, Lieberman PM (2014) Epigenetic regulation of EBV persistence and oncogenesis. Semin Cancer Biol 26:22-29.
    • (2014) Semin Cancer Biol , vol.26 , pp. 22-29
    • Tempera, I.1    Lieberman, P.M.2
  • 21
    • 84873046867 scopus 로고    scopus 로고
    • CTCF regulates Kaposi's sarcomaassociated herpesvirus latency transcription by nucleosome displacement and RNA polymerase programming
    • Kang H, Cho H, Sung GH, Lieberman PM (2013) CTCF regulates Kaposi's sarcomaassociated herpesvirus latency transcription by nucleosome displacement and RNA polymerase programming. J Virol 87(3):1789-1799.
    • (2013) J Virol , vol.87 , Issue.3 , pp. 1789-1799
    • Kang, H.1    Cho, H.2    Sung, G.H.3    Lieberman, P.M.4
  • 22
    • 67650997080 scopus 로고    scopus 로고
    • Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
    • Hadjur S, et al. (2009) Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus. Nature 460(7253):410-413.
    • (2009) Nature , vol.460 , Issue.7253 , pp. 410-413
    • Hadjur, S.1
  • 23
    • 65549159993 scopus 로고    scopus 로고
    • Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary
    • Witcher M, Emerson BM (2009) Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary. Mol Cell 34(3):271-284.
    • (2009) Mol Cell , vol.34 , Issue.3 , pp. 271-284
    • Witcher, M.1    Emerson, B.M.2
  • 24
    • 84878590595 scopus 로고    scopus 로고
    • A genome-wide map of CTCF multivalency redefines the CTCF code
    • Nakahashi H, et al. (2013) A genome-wide map of CTCF multivalency redefines the CTCF code. Cell Reports 3(5):1678-1689.
    • (2013) Cell Reports , vol.3 , Issue.5 , pp. 1678-1689
    • Nakahashi, H.1
  • 25
    • 65649123756 scopus 로고    scopus 로고
    • Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster
    • Mishiro T, et al. (2009) Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster. EMBO J 28(9):1234-1245.
    • (2009) EMBO J , vol.28 , Issue.9 , pp. 1234-1245
    • Mishiro, T.1
  • 26
    • 84965102334 scopus 로고    scopus 로고
    • Differential contribution of cis-regulatory elements to higher order chromatin structure and expression of the CFTR locus
    • Yang R, et al. (2015) Differential contribution of cis-regulatory elements to higher order chromatin structure and expression of the CFTR locus. Nucleic Acids Res, 10.1093/nar/gkv1358.
    • (2015) Nucleic Acids Res
    • Yang, R.1
  • 27
    • 33747885707 scopus 로고    scopus 로고
    • CTCF-dependent chromatin insulator is linked to epigenetic remodeling
    • Ishihara K, Oshimura M, Nakao M (2006) CTCF-dependent chromatin insulator is linked to epigenetic remodeling. Mol Cell 23(5):733-742.
    • (2006) Mol Cell , vol.23 , Issue.5 , pp. 733-742
    • Ishihara, K.1    Oshimura, M.2    Nakao, M.3
  • 28
    • 0842310349 scopus 로고    scopus 로고
    • CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
    • Yusufzai TM, Tagami H, Nakatani Y, Felsenfeld G (2004) CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species. Mol Cell 13(2):291-298.
    • (2004) Mol Cell , vol.13 , Issue.2 , pp. 291-298
    • Yusufzai, T.M.1    Tagami, H.2    Nakatani, Y.3    Felsenfeld, G.4
  • 29
    • 84902675048 scopus 로고    scopus 로고
    • The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma
    • Cook LB, et al. (2014) The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood 123(25):3925-3931.
    • (2014) Blood , vol.123 , Issue.25 , pp. 3925-3931
    • Cook, L.B.1
  • 30
    • 84924084596 scopus 로고    scopus 로고
    • 3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes
    • Babaei S, Akhtar W, de Jong J, Reinders M, de Ridder J (2015) 3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes. Nat Commun 6:6381.
    • (2015) Nat Commun , vol.6 , pp. 6381
    • Babaei, S.1    Akhtar, W.2    De Jong, J.3    Reinders, M.4    De Ridder, J.5
  • 31
    • 51349090473 scopus 로고    scopus 로고
    • Insertional oncogenesis in 4 patients after retrovirusmediated gene therapy of SCID-X1
    • Hacein-Bey-Abina S, et al. (2008) Insertional oncogenesis in 4 patients after retrovirusmediated gene therapy of SCID-X1. J Clin Invest 118(9):3132-3142.
    • (2008) J Clin Invest , vol.118 , Issue.9 , pp. 3132-3142
    • Hacein-Bey-Abina, S.1
  • 32
    • 84903398938 scopus 로고    scopus 로고
    • Quantification of HTLV-1 clonality and TCR diversity
    • Laydon DJ, et al. (2014) Quantification of HTLV-1 clonality and TCR diversity. PLOS Comput Biol 10(6):e1003646.
    • (2014) PLOS Comput Biol , vol.10 , Issue.6
    • Laydon, D.J.1
  • 33
    • 84869038204 scopus 로고    scopus 로고
    • Three murine leukemia virus integration regions within 100 kilobases upstream of c-myb are proximal to the 5′ regulatory region of the gene through DNA looping
    • Zhang J, Markus J, Bies J, Paul T, Wolff L (2012) Three murine leukemia virus integration regions within 100 kilobases upstream of c-myb are proximal to the 5′ regulatory region of the gene through DNA looping. J Virol 86(19):10524-10532.
    • (2012) J Virol , vol.86 , Issue.19 , pp. 10524-10532
    • Zhang, J.1    Markus, J.2    Bies, J.3    Paul, T.4    Wolff, L.5
  • 34
    • 0023508507 scopus 로고
    • Cytokine-induced expression of HIV-1 in a chronically infected promonocyte cell line
    • Folks TM, Justement J, Kinter A, Dinarello CA, Fauci AS (1987) Cytokine-induced expression of HIV-1 in a chronically infected promonocyte cell line. Science 238(4828): 800-802.
    • (1987) Science , vol.238 , Issue.4828 , pp. 800-802
    • Folks, T.M.1    Justement, J.2    Kinter, A.3    Dinarello, C.A.4    Fauci, A.S.5
  • 35
    • 84861328334 scopus 로고    scopus 로고
    • Higher-order chromatin regulation and differential gene expression in the human tumor necrosis factor/lymphotoxin locus in hepatocellular carcinoma cells
    • Watanabe T, et al. (2012) Higher-order chromatin regulation and differential gene expression in the human tumor necrosis factor/lymphotoxin locus in hepatocellular carcinoma cells. Mol Cell Biol 32(8):1529-1541.
    • (2012) Mol Cell Biol , vol.32 , Issue.8 , pp. 1529-1541
    • Watanabe, T.1
  • 36
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14):1754-1760.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 37
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Zhang Y, et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol 9(9): R137.
    • (2008) Genome Biol , vol.9 , Issue.9 , pp. R137
    • Zhang, Y.1
  • 38
    • 0028076290 scopus 로고
    • Construction and characterization of infectious human T-cell leukemia virus type 1 molecular clones
    • Kimata JT, Wong FH, Wang JJ, Ratner L (1994) Construction and characterization of infectious human T-cell leukemia virus type 1 molecular clones. Virology 204(2): 656-664.
    • (1994) Virology , vol.204 , Issue.2 , pp. 656-664
    • Kimata, J.T.1    Wong, F.H.2    Wang, J.J.3    Ratner, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.