-
1
-
-
0035575568
-
Personalized medicine: revolutionizing drug discovery and patient care
-
Ginsburg GS and McCarthy JJ. Personalized medicine: revolutionizing drug discovery and patient care. Trends in biotechnology. 2001; 19:491-496.
-
(2001)
Trends in biotechnology
, vol.19
, pp. 491-496
-
-
Ginsburg, G.S.1
McCarthy, J.J.2
-
3
-
-
84865455090
-
The future of antibodies as cancer drugs
-
Reichert JM and Dhimolea E. The future of antibodies as cancer drugs. Drug discovery today. 2012; 17:954-963.
-
(2012)
Drug discovery today
, vol.17
, pp. 954-963
-
-
Reichert, J.M.1
Dhimolea, E.2
-
4
-
-
84903372523
-
Developments and challenges for mAb-based therapeutics
-
Goswami S, Wang W, Arakawa T and Ohtake S. Developments and challenges for mAb-based therapeutics. Antibodies. 2013; 2:452-500.
-
(2013)
Antibodies
, vol.2
, pp. 452-500
-
-
Goswami, S.1
Wang, W.2
Arakawa, T.3
Ohtake, S.4
-
6
-
-
84934444640
-
Antibody-drug conjugate (ADC) clinical pipeline: a review
-
Sassoon I and Blanc V. Antibody-drug conjugate (ADC) clinical pipeline: a review. Methods Mol Biol. 2013; 1045:1-27.
-
(2013)
Methods Mol Biol
, vol.1045
, pp. 1-27
-
-
Sassoon, I.1
Blanc, V.2
-
7
-
-
84934442221
-
Antibody-drug conjugate target selection: critical factors
-
Bander NH. Antibody-drug conjugate target selection: critical factors. Methods Mol Biol. 2013; 1045:29-40.
-
(2013)
Methods Mol Biol
, vol.1045
, pp. 29-40
-
-
Bander, N.H.1
-
9
-
-
33847401924
-
High-throughput electronic biology: mining information for drug discovery
-
Loging W, Harland L and Williams-Jones B. High-throughput electronic biology: mining information for drug discovery. Nat Rev Drug Discov. 2007; 6:220-230.
-
(2007)
Nat Rev Drug Discov
, vol.6
, pp. 220-230
-
-
Loging, W.1
Harland, L.2
Williams-Jones, B.3
-
10
-
-
4444286756
-
Bioinformatics and cancer target discovery
-
Desany B and Zhang Z. Bioinformatics and cancer target discovery. Drug discovery today. 2004; 9:795-802.
-
(2004)
Drug discovery today
, vol.9
, pp. 795-802
-
-
Desany, B.1
Zhang, Z.2
-
13
-
-
4043128071
-
Genetic analysis of genome-wide variation in human gene expression
-
Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, Spielman RS and Cheung VG. Genetic analysis of genome-wide variation in human gene expression. Nature. 2004; 430:743-747.
-
(2004)
Nature
, vol.430
, pp. 743-747
-
-
Morley, M.1
Molony, C.M.2
Weber, T.M.3
Devlin, J.L.4
Ewens, K.G.5
Spielman, R.S.6
Cheung, V.G.7
-
14
-
-
0036900895
-
Fundamentals of experimental design for cDNA microarrays
-
Churchill GA. Fundamentals of experimental design for cDNA microarrays. Nat Genet. 2002; 32 Suppl:490-495.
-
(2002)
Nat Genet
, vol.32
, pp. 490-495
-
-
Churchill, G.A.1
-
15
-
-
84874271270
-
NCBI GEO: archive for functional genomics data sets-update
-
Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M, Yefanov A, Lee H, Zhang N, Robertson CL, Serova N, Davis S, et al. NCBI GEO: archive for functional genomics data sets-update. Nucleic Acids Res. 2013; 41(Database issue):D991-995.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
, pp. D991-D995
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
Evangelista, C.4
Kim, I.F.5
Tomashevsky, M.6
Marshall, K.A.7
Phillippy, K.H.8
Sherman, P.M.9
Holko, M.10
Yefanov, A.11
Lee, H.12
Zhang, N.13
Robertson, C.L.14
Serova, N.15
Davis, S.16
-
17
-
-
84872596110
-
Reuse of public genome-wide gene expression data
-
Rung J and Brazma A. Reuse of public genome-wide gene expression data. Nat Rev Genet. 2013; 14:89-99.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 89-99
-
-
Rung, J.1
Brazma, A.2
-
18
-
-
56649093037
-
GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus
-
Zhu Y, Davis S, Stephens R, Meltzer PS and Chen Y. GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus. Bioinformatics. 2008; 24:2798-2800.
-
(2008)
Bioinformatics
, vol.24
, pp. 2798-2800
-
-
Zhu, Y.1
Davis, S.2
Stephens, R.3
Meltzer, P.S.4
Chen, Y.5
-
19
-
-
77954526150
-
American Society of Clinical Oncology/College Of American Pathologists guideline recommendations for immunohistochemical testing of estrogen and progesterone receptors in breast cancer
-
Hammond ME, Hayes DF, Dowsett M, Allred DC, Hagerty KL, Badve S, Fitzgibbons PL, Francis G, Goldstein NS, Hayes M, Hicks DG, Lester S, Love R, Mangu PB, McShane L, Miller K, et al. American Society of Clinical Oncology/College Of American Pathologists guideline recommendations for immunohistochemical testing of estrogen and progesterone receptors in breast cancer. Journal of clinical oncology: official journal of the American Society of Clinical Oncology. 2010; 28:2784-2795.
-
(2010)
Journal of clinical oncology: official journal of the American Society of Clinical Oncology
, vol.28
, pp. 2784-2795
-
-
Hammond, M.E.1
Hayes, D.F.2
Dowsett, M.3
Allred, D.C.4
Hagerty, K.L.5
Badve, S.6
Fitzgibbons, P.L.7
Francis, G.8
Goldstein, N.S.9
Hayes, M.10
Hicks, D.G.11
Lester, S.12
Love, R.13
Mangu, P.B.14
McShane, L.15
Miller, K.16
-
20
-
-
33748849648
-
Machine learning in bioinformatics
-
Larranaga P, Calvo B, Santana R, Bielza C, Galdiano J, Inza I, Lozano JA, Armananzas R, Santafe G, Perez A and Robles V. Machine learning in bioinformatics. Briefings in bioinformatics. 2006; 7:86-112.
-
(2006)
Briefings in bioinformatics
, vol.7
, pp. 86-112
-
-
Larranaga, P.1
Calvo, B.2
Santana, R.3
Bielza, C.4
Galdiano, J.5
Inza, I.6
Lozano, J.A.7
Armananzas, R.8
Santafe, G.9
Perez, A.10
Robles, V.11
-
21
-
-
35748932917
-
A review of feature selection techniques in bioinformatics
-
Saeys Y, Inza I and Larranaga P. A review of feature selection techniques in bioinformatics. Bioinformatics. 2007; 23:2507-2517.
-
(2007)
Bioinformatics
, vol.23
, pp. 2507-2517
-
-
Saeys, Y.1
Inza, I.2
Larranaga, P.3
-
22
-
-
0345399126
-
Student. The probable error of a mean
-
Student. The probable error of a mean. Biometrika. 1908:1-25.
-
(1908)
Biometrika
, pp. 1-25
-
-
-
24
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology. 2004; 3:3.
-
(2004)
Statistical Applications in Genetics and Molecular Biology
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
25
-
-
84926507971
-
limma powers differential expression analyses for RNA-sequencing and microarray studies
-
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W and Smyth GK. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015.
-
(2015)
Nucleic Acids Res
-
-
Ritchie, M.E.1
Phipson, B.2
Wu, D.3
Hu, Y.4
Law, C.W.5
Shi, W.6
Smyth, G.K.7
-
26
-
-
0039802908
-
The earth is round (p<.05)
-
Cohen J. The earth is round (p<.05). American psychologist. 1994; 49:997.
-
(1994)
American psychologist
, vol.49
, pp. 997
-
-
Cohen, J.1
-
27
-
-
84891788717
-
Research commentary-too big to fail: large samples and the p-value problem
-
Lin M, Lucas Jr HC and Shmueli G. Research commentary-too big to fail: large samples and the p-value problem. Information Systems Research. 2013; 24:906-917.
-
(2013)
Information Systems Research
, vol.24
, pp. 906-917
-
-
Lin, M.1
Lucas, H.C.2
Shmueli, G.3
-
28
-
-
30644464444
-
Gene selection and classification of microarray data using random forest
-
Díaz-Uriarte R and De Andres SA. Gene selection and classification of microarray data using random forest. BMC Bioinformatics. 2006; 7:3.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 3
-
-
Díaz-Uriarte, R.1
De Andres, S.A.2
-
29
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon I, Weston J, Barnhill S and Vapnik V. Gene selection for cancer classification using support vector machines. Machine Learning. 2002; 46:389-422.
-
(2002)
Machine Learning
, vol.46
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
Barnhill, S.3
Vapnik, V.4
-
30
-
-
27744527963
-
Nonparametric estimation of the coefficient of overlapping-theory and empirical application
-
Schmid F and Schmidt A. Nonparametric estimation of the coefficient of overlapping-theory and empirical application. Computational statistics & data analysis. 2006; 50:1583-1596.
-
(2006)
Computational statistics & data analysis
, vol.50
, pp. 1583-1596
-
-
Schmid, F.1
Schmidt, A.2
-
31
-
-
0001110699
-
On bandwidth variation in kernel estimates-a square root law
-
Abramson IS. On bandwidth variation in kernel estimates-a square root law. The Annals of Statistics. 1982:1217-1223.
-
(1982)
The Annals of Statistics
, pp. 1217-1223
-
-
Abramson, I.S.1
-
33
-
-
84896459209
-
World cancer report 2014
-
International Agency for Research on Cancer. World cancer report 2014. Geneva: WHO. 2014.
-
(2014)
Geneva: WHO
-
-
-
34
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
The Cancer Genome Atlas Network. Comprehensive molecular portraits of human breast tumours. Nature. 2012; 490(7418):61-70.
-
(2012)
Nature
, vol.490
, Issue.7418
, pp. 61-70
-
-
-
35
-
-
84900002772
-
Curative properties of noninternalizing antibody-drug conjugates based on maytansinoids
-
Perrino E, Steiner M, Krall N, Bernardes GJ, Pretto F, Casi G and Neri D. Curative properties of noninternalizing antibody-drug conjugates based on maytansinoids. Cancer Res. 2014; 74:2569-2578.
-
(2014)
Cancer Res
, vol.74
, pp. 2569-2578
-
-
Perrino, E.1
Steiner, M.2
Krall, N.3
Bernardes, G.J.4
Pretto, F.5
Casi, G.6
Neri, D.7
-
38
-
-
0038481970
-
The pathogenesis of cancer metastasis: the'seed and soil'hypothesis revisited
-
Fidler IJ. The pathogenesis of cancer metastasis: the'seed and soil'hypothesis revisited. Nature Reviews Cancer. 2003; 3:453-458.
-
(2003)
Nature Reviews Cancer
, vol.3
, pp. 453-458
-
-
Fidler, I.J.1
-
39
-
-
79953147370
-
A perspective on cancer cell metastasis
-
Chaffer CL and Weinberg RA. A perspective on cancer cell metastasis. Science. 2011; 331:1559-1564.
-
(2011)
Science
, vol.331
, pp. 1559-1564
-
-
Chaffer, C.L.1
Weinberg, R.A.2
-
40
-
-
63049123066
-
Transitions between epithelial and mesenchymal states: acquisition of malignant and stem cell traits
-
Polyak K and Weinberg RA. Transitions between epithelial and mesenchymal states: acquisition of malignant and stem cell traits. Nat Rev Cancer. 2009; 9:265-273.
-
(2009)
Nat Rev Cancer
, vol.9
, pp. 265-273
-
-
Polyak, K.1
Weinberg, R.A.2
-
41
-
-
73949102380
-
Multidrug resistance in cancer
-
Baguley BC. Multidrug resistance in cancer. Methods Mol Biol. 2010; 596:1-14.
-
(2010)
Methods Mol Biol
, vol.596
, pp. 1-14
-
-
Baguley, B.C.1
-
42
-
-
2942707848
-
Twist, a master regulator of morphogenesis, plays an essential role in tumor metastasis
-
Yang J, Mani SA, Donaher JL, Ramaswamy S, Itzykson RA, Come C, Savagner P, Gitelman I, Richardson A and Weinberg RA. Twist, a master regulator of morphogenesis, plays an essential role in tumor metastasis. Cell. 2004; 117:927-939.
-
(2004)
Cell
, vol.117
, pp. 927-939
-
-
Yang, J.1
Mani, S.A.2
Donaher, J.L.3
Ramaswamy, S.4
Itzykson, R.A.5
Come, C.6
Savagner, P.7
Gitelman, I.8
Richardson, A.9
Weinberg, R.A.10
-
43
-
-
43049103824
-
The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1
-
Gregory PA, Bert AG, Paterson EL, Barry SC, Tsykin A, Farshid G, Vadas MA, Khew-Goodall Y and Goodall GJ. The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1. Nature cell biology. 2008; 10:593-601.
-
(2008)
Nature cell biology
, vol.10
, pp. 593-601
-
-
Gregory, P.A.1
Bert, A.G.2
Paterson, E.L.3
Barry, S.C.4
Tsykin, A.5
Farshid, G.6
Vadas, M.A.7
Khew-Goodall, Y.8
Goodall, G.J.9
-
44
-
-
77951717316
-
Molecular target class is predictive of in vitro response profile
-
Greshock J, Bachman KE, Degenhardt YY, Jing J, Wen YH, Eastman S, McNeil E, Moy C, Wegrzyn R, Auger K, Hardwicke MA and Wooster R. Molecular target class is predictive of in vitro response profile. Cancer Res. 2010; 70:3677-3686.
-
(2010)
Cancer Res
, vol.70
, pp. 3677-3686
-
-
Greshock, J.1
Bachman, K.E.2
Degenhardt, Y.Y.3
Jing, J.4
Wen, Y.H.5
Eastman, S.6
McNeil, E.7
Moy, C.8
Wegrzyn, R.9
Auger, K.10
Hardwicke, M.A.11
Wooster, R.12
-
45
-
-
77950287156
-
Exon array analyses across the NCI-60 reveal potential regulation of TOP1 by transcription pausing at guanosine quartets in the first intron
-
Reinhold WC, Mergny JL, Liu H, Ryan M, Pfister TD, Kinders R, Parchment R, Doroshow J, Weinstein JN and Pommier Y. Exon array analyses across the NCI-60 reveal potential regulation of TOP1 by transcription pausing at guanosine quartets in the first intron. Cancer Res. 2010; 70:2191-2203.
-
(2010)
Cancer Res
, vol.70
, pp. 2191-2203
-
-
Reinhold, W.C.1
Mergny, J.L.2
Liu, H.3
Ryan, M.4
Pfister, T.D.5
Kinders, R.6
Parchment, R.7
Doroshow, J.8
Weinstein, J.N.9
Pommier, Y.10
-
46
-
-
0034050902
-
Systematic variation in gene expression patterns in human cancer cell lines
-
Ross DT, Scherf U, Eisen MB, Perou CM, Rees C, Spellman P, Iyer V, Jeffrey SS, Van de Rijn M, Waltham M, Pergamenschikov A, Lee JC, Lashkari D, Shalon D, Myers TG, Weinstein JN, et al. Systematic variation in gene expression patterns in human cancer cell lines. Nat Genet. 2000; 24:227-235.
-
(2000)
Nat Genet
, vol.24
, pp. 227-235
-
-
Ross, D.T.1
Scherf, U.2
Eisen, M.B.3
Perou, C.M.4
Rees, C.5
Spellman, P.6
Iyer, V.7
Jeffrey, S.S.8
Van de Rijn, M.9
Waltham, M.10
Pergamenschikov, A.11
Lee, J.C.12
Lashkari, D.13
Shalon, D.14
Myers, T.G.15
Weinstein, J.N.16
-
47
-
-
29144535372
-
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
-
Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, Bunney WE, Myers RM, Speed TP, Akil H, Watson SJ and Meng F. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res. 2005; 33:e175.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Dai, M.1
Wang, P.2
Boyd, A.D.3
Kostov, G.4
Athey, B.5
Jones, E.G.6
Bunney, W.E.7
Myers, R.M.8
Speed, T.P.9
Akil, H.10
Watson, S.J.11
Meng, F.12
-
49
-
-
58149187893
-
The GOA database in 2009-an integrated Gene Ontology Annotation resource
-
Barrell D, Dimmer E, Huntley RP, Binns D, O'Donovan C and Apweiler R. The GOA database in 2009-an integrated Gene Ontology Annotation resource. Nucleic Acids Res. 2009; 37:D396-403.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D396-D403
-
-
Barrell, D.1
Dimmer, E.2
Huntley, R.P.3
Binns, D.4
O'Donovan, C.5
Apweiler, R.6
-
50
-
-
84941001658
-
UniProt: a hub for protein information
-
UniProt Consortium. UniProt: a hub for protein information. Nucleic Acids Res. 2014.
-
(2014)
Nucleic Acids Res
-
-
-
51
-
-
56449129810
-
Targeting HER2-positive breast cancer with trastuzumab-DM1, an antibody-cytotoxic drug conjugate
-
Lewis Phillips GD, Li G, Dugger DL, Crocker LM, Parsons KL, Mai E, Blattler WA, Lambert JM, Chari RV, Lutz RJ, Wong WL, Jacobson FS, Koeppen H, Schwall RH, Kenkare-Mitra SR, Spencer SD, et al. Targeting HER2-positive breast cancer with trastuzumab-DM1, an antibody-cytotoxic drug conjugate. Cancer Res. 2008; 68:9280-9290.
-
(2008)
Cancer Res
, vol.68
, pp. 9280-9290
-
-
Lewis Phillips, G.D.1
Li, G.2
Dugger, D.L.3
Crocker, L.M.4
Parsons, K.L.5
Mai, E.6
Blattler, W.A.7
Lambert, J.M.8
Chari, R.V.9
Lutz, R.J.10
Wong, W.L.11
Jacobson, F.S.12
Koeppen, H.13
Schwall, R.H.14
Kenkare-Mitra, S.R.15
Spencer, S.D.16
-
53
-
-
79952267051
-
The ClinicalTrials.gov results database-update and key issues
-
Zarin DA, Tse T, Williams RJ, CaliffRM and Ide NC. The ClinicalTrials.gov results database-update and key issues. N Engl J Med. 2011; 364:852-860.
-
(2011)
N Engl J Med
, vol.364
, pp. 852-860
-
-
Zarin, D.A.1
Tse, T.2
Williams, R.J.3
Califf, R.M.4
Ide, N.C.5
-
54
-
-
84962306006
-
-
ClinicalTrials.gov
-
U.S. National Institutes of Health. (2000). ClinicalTrials.gov (http://www.clinicaltrials.gov).
-
(2000)
-
-
-
55
-
-
84941253818
-
Trop-2 is a novel target for solid cancer therapy with sacituzumab govitecan (IMMU-132), an antibody-drug conjugate (ADC)
-
Goldenberg DM, Cardillo TM, Govindan SV, Rossi EA and Sharkey RM. Trop-2 is a novel target for solid cancer therapy with sacituzumab govitecan (IMMU-132), an antibody-drug conjugate (ADC). Oncotarget. 2015; 6:22496-22512. doi: 10.18632/oncotarget.4318.
-
(2015)
Oncotarget
, vol.6
, pp. 22496-22512
-
-
Goldenberg, D.M.1
Cardillo, T.M.2
Govindan, S.V.3
Rossi, E.A.4
Sharkey, R.M.5
-
56
-
-
0037733005
-
A phase 2 study of the cytotoxic immunoconjugate CMB-401 (hCTM01-calicheamicin) in patients with platinum-sensitive recurrent epithelial ovarian carcinoma
-
Chan SY, Gordon AN, Coleman RE, Hall JB, Berger MS, Sherman ML, Eten CB and Finkler NJ. A phase 2 study of the cytotoxic immunoconjugate CMB-401 (hCTM01-calicheamicin) in patients with platinum-sensitive recurrent epithelial ovarian carcinoma. Cancer immunology, immunotherapy: CII. 2003; 52:243-248.
-
(2003)
Cancer immunology, immunotherapy: CII
, vol.52
, pp. 243-248
-
-
Chan, S.Y.1
Gordon, A.N.2
Coleman, R.E.3
Hall, J.B.4
Berger, M.S.5
Sherman, M.L.6
Eten, C.B.7
Finkler, N.J.8
-
57
-
-
0033752234
-
Phase I open study of the effects of ascending doses of the cytotoxic immunoconjugate CMB-401 (hCTMO1-calicheamicin) in patients with epithelial ovarian cancer
-
Gillespie AM, Broadhead TJ, Chan SY, Owen J, Farnsworth AP, Sopwith M and Coleman RE. Phase I open study of the effects of ascending doses of the cytotoxic immunoconjugate CMB-401 (hCTMO1-calicheamicin) in patients with epithelial ovarian cancer. Annals of oncology: official journal of the European Society for Medical Oncology/ESMO. 2000; 11:735-741.
-
(2000)
Annals of oncology: official journal of the European Society for Medical Oncology/ESMO
, vol.11
, pp. 735-741
-
-
Gillespie, A.M.1
Broadhead, T.J.2
Chan, S.Y.3
Owen, J.4
Farnsworth, A.P.5
Sopwith, M.6
Coleman, R.E.7
-
60
-
-
84928759208
-
Adoptive cell transfer as personalized immunotherapy for human cancer
-
Rosenberg SA and Restifo NP. Adoptive cell transfer as personalized immunotherapy for human cancer. Science. 2015; 348:62-68.
-
(2015)
Science
, vol.348
, pp. 62-68
-
-
Rosenberg, S.A.1
Restifo, N.P.2
-
61
-
-
68249144780
-
Breast cancer subtypes based on ER/PR and Her2 expression: comparison of clinicopathologic features and survival
-
Onitilo AA, Engel JM, Greenlee RT and Mukesh BN. Breast cancer subtypes based on ER/PR and Her2 expression: comparison of clinicopathologic features and survival. Clinical medicine & research. 2009; 7:4-13.
-
(2009)
Clinical medicine & research
, vol.7
, pp. 4-13
-
-
Onitilo, A.A.1
Engel, J.M.2
Greenlee, R.T.3
Mukesh, B.N.4
-
62
-
-
34250379434
-
Armed antibodies targeting the mucin repeats of the ovarian cancer antigen, MUC16, are highly efficacious in animal tumor models
-
Chen Y, Clark S, Wong T, Chen Y, Chen Y, Dennis MS, Luis E, Zhong F, Bheddah S, Koeppen H, Gogineni A, Ross S, Polakis P and Mallet W. Armed antibodies targeting the mucin repeats of the ovarian cancer antigen, MUC16, are highly efficacious in animal tumor models. Cancer Res. 2007; 67:4924-4932.
-
(2007)
Cancer Res
, vol.67
, pp. 4924-4932
-
-
Chen, Y.1
Clark, S.2
Wong, T.3
Chen, Y.4
Chen, Y.5
Dennis, M.S.6
Luis, E.7
Zhong, F.8
Bheddah, S.9
Koeppen, H.10
Gogineni, A.11
Ross, S.12
Polakis, P.13
Mallet, W.14
-
63
-
-
33646391659
-
Identification of a new cancer/germline gene, KK-LC-1, encoding an antigen recognized by autologous CTL induced on human lung adenocarcinoma
-
Fukuyama T, Hanagiri T, Takenoyama M, Ichiki Y, Mizukami M, So T, Sugaya M, So T, Sugio K and Yasumoto K. Identification of a new cancer/germline gene, KK-LC-1, encoding an antigen recognized by autologous CTL induced on human lung adenocarcinoma. Cancer Res. 2006; 66:4922-4928.
-
(2006)
Cancer Res
, vol.66
, pp. 4922-4928
-
-
Fukuyama, T.1
Hanagiri, T.2
Takenoyama, M.3
Ichiki, Y.4
Mizukami, M.5
So, T.6
Sugaya, M.7
So, T.8
Sugio, K.9
Yasumoto, K.10
-
64
-
-
84856934228
-
Rationale behind targeting fibroblast activation protein-expressing carcinoma-associated fibroblasts as a novel chemotherapeutic strategy
-
Brennen WN, Isaacs JT and Denmeade SR. Rationale behind targeting fibroblast activation protein-expressing carcinoma-associated fibroblasts as a novel chemotherapeutic strategy. Mol Cancer Ther. 2012; 11:257-266.
-
(2012)
Mol Cancer Ther
, vol.11
, pp. 257-266
-
-
Brennen, W.N.1
Isaacs, J.T.2
Denmeade, S.R.3
-
65
-
-
84902107760
-
Understanding fibroblast activation protein (FAP): substrates, activities, expression and targeting for cancer therapy
-
Hamson EJ, Keane FM, Tholen S, Schilling O and Gorrell MD. Understanding fibroblast activation protein (FAP): substrates, activities, expression and targeting for cancer therapy. Proteomics Clinical applications. 2014; 8:454-463.
-
(2014)
Proteomics Clinical applications
, vol.8
, pp. 454-463
-
-
Hamson, E.J.1
Keane, F.M.2
Tholen, S.3
Schilling, O.4
Gorrell, M.D.5
-
66
-
-
51649087512
-
Effective immunoconjugate therapy in cancer models targeting a serine protease of tumor fibroblasts
-
Ostermann E, Garin-Chesa P, Heider KH, Kalat M, Lamche H, Puri C, Kerjaschki D, Rettig WJ and Adolf GR. Effective immunoconjugate therapy in cancer models targeting a serine protease of tumor fibroblasts. Clinical cancer research: an official journal of the American Association for Cancer Research. 2008; 14:4584-4592.
-
(2008)
Clinical cancer research: an official journal of the American Association for Cancer Research
, vol.14
, pp. 4584-4592
-
-
Ostermann, E.1
Garin-Chesa, P.2
Heider, K.H.3
Kalat, M.4
Lamche, H.5
Puri, C.6
Kerjaschki, D.7
Rettig, W.J.8
Adolf, G.R.9
-
67
-
-
84961657378
-
P3-17-01: ApoE and Its Receptors (LRP8, VLDLR) Function as Growth Signals for Triple-Negative Breast Cancer and Represent a Novel Therapeutic Target
-
Shiang C, Qi Y, Wang B, Broom B and Pusztai L. P3-17-01: ApoE and Its Receptors (LRP8, VLDLR) Function as Growth Signals for Triple-Negative Breast Cancer and Represent a Novel Therapeutic Target. Cancer Research. 2011; 71(24 Supplement):P3-17-01-P13-17-01.
-
(2011)
Cancer Research
, vol.71
, Issue.24
-
-
Shiang, C.1
Qi, Y.2
Wang, B.3
Broom, B.4
Pusztai, L.5
-
68
-
-
84879489442
-
A disintegrin and metalloproteinase-12 (ADAM12): function, roles in disease progression, and clinical implications
-
Nyren-Erickson EK, Jones JM, Srivastava DK and Mallik S. A disintegrin and metalloproteinase-12 (ADAM12): function, roles in disease progression, and clinical implications. Biochimica et biophysica acta. 2013; 1830:4445-4455.
-
(2013)
Biochimica et biophysica acta
, vol.1830
, pp. 4445-4455
-
-
Nyren-Erickson, E.K.1
Jones, J.M.2
Srivastava, D.K.3
Mallik, S.4
-
69
-
-
84928752813
-
ADAM12-L is a direct target of the miR-29 and miR-200 families in breast cancer
-
Duhachek-Muggy S and Zolkiewska A. ADAM12-L is a direct target of the miR-29 and miR-200 families in breast cancer. BMC cancer. 2015; 15:93.
-
(2015)
BMC cancer
, vol.15
, pp. 93
-
-
Duhachek-Muggy, S.1
Zolkiewska, A.2
-
72
-
-
71149108056
-
Correlation of mRNA and protein in complex biological samples
-
Maier T, Guell M and Serrano L. Correlation of mRNA and protein in complex biological samples. FEBS letters. 2009; 583:3966-3973.
-
(2009)
FEBS letters
, vol.583
, pp. 3966-3973
-
-
Maier, T.1
Guell, M.2
Serrano, L.3
-
73
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W and Selbach M. Global quantification of mammalian gene expression control. Nature. 2011; 473:337-342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
74
-
-
84901611036
-
Mass-spectrometry-based draft of the human proteome
-
Wilhelm M, Schlegl J, Hahne H, Moghaddas Gholami A, Lieberenz M, Savitski MM, Ziegler E, Butzmann L, Gessulat S, Marx H, Mathieson T, Lemeer S, Schnatbaum K, Reimer U, Wenschuh H, Mollenhauer M, et al. Mass-spectrometry-based draft of the human proteome. Nature. 2014; 509:582-587.
-
(2014)
Nature
, vol.509
, pp. 582-587
-
-
Wilhelm, M.1
Schlegl, J.2
Hahne, H.3
Moghaddas Gholami, A.4
Lieberenz, M.5
Savitski, M.M.6
Ziegler, E.7
Butzmann, L.8
Gessulat, S.9
Marx, H.10
Mathieson, T.11
Lemeer, S.12
Schnatbaum, K.13
Reimer, U.14
Wenschuh, H.15
Mollenhauer, M.16
-
75
-
-
84880109599
-
Glycoprotein non-metastatic b (GPNMB): A metastatic mediator and emerging therapeutic target in cancer
-
Maric G, Rose AA, Annis MG and Siegel PM. Glycoprotein non-metastatic b (GPNMB): A metastatic mediator and emerging therapeutic target in cancer. OncoTargets and therapy. 2013; 6:839-852.
-
(2013)
OncoTargets and therapy
, vol.6
, pp. 839-852
-
-
Maric, G.1
Rose, A.A.2
Annis, M.G.3
Siegel, P.M.4
-
76
-
-
67650687092
-
CellMiner: a relational database and query tool for the NCI-60 cancer cell lines
-
Shankavaram UT, Varma S, Kane D, Sunshine M, Chary KK, Reinhold WC, Pommier Y and Weinstein JN. CellMiner: a relational database and query tool for the NCI-60 cancer cell lines. BMC genomics. 2009; 10:277.
-
(2009)
BMC genomics
, vol.10
, pp. 277
-
-
Shankavaram, U.T.1
Varma, S.2
Kane, D.3
Sunshine, M.4
Chary, K.K.5
Reinhold, W.C.6
Pommier, Y.7
Weinstein, J.N.8
-
79
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome biology. 2004; 5:R80.
-
(2004)
Genome biology
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
-
81
-
-
0036947892
-
Robust estimators for expression analysis
-
Hubbell E, Liu W-M and Mei R. Robust estimators for expression analysis. Bioinformatics. 2002; 18(12):1585-1592.
-
(2002)
Bioinformatics
, vol.18
, Issue.12
, pp. 1585-1592
-
-
Hubbell, E.1
Liu, W.-M.2
Mei, R.3
-
82
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehvaslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, et al. The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 2002; 12(10):1611-1618.
-
(2002)
Genome Res
, vol.12
, Issue.10
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
Fuellen, G.7
Gilbert, J.G.8
Korf, I.9
Lapp, H.10
Lehvaslaiho, H.11
Matsalla, C.12
Mungall, C.J.13
Osborne, B.I.14
Pocock, M.R.15
Schattner, P.16
-
84
-
-
7244248755
-
A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression
-
Li T, Zhang C and Ogihara M. A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression. Bioinformatics. 2004; 20:2429-2437.
-
(2004)
Bioinformatics
, vol.20
, pp. 2429-2437
-
-
Li, T.1
Zhang, C.2
Ogihara, M.3
-
85
-
-
0345822598
-
The positive false discovery rate: A Bayesian interpretation and the q-value
-
Storey JD. The positive false discovery rate: A Bayesian interpretation and the q-value. Annals of Statistics. 2003:2013-2035.
-
(2003)
Annals of Statistics
, pp. 2013-2035
-
-
Storey, J.D.1
-
87
-
-
84892410940
-
-
R package version 1.6-2
-
Meyer D, Dimitriadou E, Hornik K, Weingessel A and Leisch F. (2014). e1071: Misc Functions of the Department of Statistics, TU Wien. R package version 1.6-2.
-
(2014)
e1071: Misc Functions of the Department of Statistics, TU Wien
-
-
Meyer, D.1
Dimitriadou, E.2
Hornik, K.3
Weingessel, A.4
Leisch, F.5
-
88
-
-
65749119811
-
Estimating classification error rate: Repeated cross-validation, repeated hold-out and bootstrap
-
Kim J-H. Estimating classification error rate: Repeated cross-validation, repeated hold-out and bootstrap. Computational statistics & data analysis. 2009; 53:3735-3745.
-
(2009)
Computational statistics & data analysis
, vol.53
, pp. 3735-3745
-
-
Kim, J.-H.1
-
89
-
-
1342330535
-
Is cross-validation valid for small-sample microarray classification?
-
Braga-Neto UM and Dougherty ER. Is cross-validation valid for small-sample microarray classification? Bioinformatics. 2004; 20:374-380.
-
(2004)
Bioinformatics
, vol.20
, pp. 374-380
-
-
Braga-Neto, U.M.1
Dougherty, E.R.2
-
91
-
-
0030211964
-
Bagging predictors
-
Breiman L. Bagging predictors. Machine Learning. 1996; 24:123-140.
-
(1996)
Machine Learning
, vol.24
, pp. 123-140
-
-
Breiman, L.1
-
95
-
-
0035478854
-
Random forests
-
Breiman L. Random forests. Machine Learning. 2001; 45:5-32.
-
(2001)
Machine Learning
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
96
-
-
0003120218
-
Fast training of support vector machines using sequential minimal optimization
-
(Cambridge: MIT press)
-
Platt JC. (1999). Fast training of support vector machines using sequential minimal optimization. Advances in kernel methods. (Cambridge: MIT press), pp. 185-208.
-
(1999)
Advances in kernel methods
, pp. 185-208
-
-
Platt, J.C.1
-
97
-
-
2942596534
-
Ensemble machine learning on gene expression data for cancer classification
-
Tan AC and Gilbert D. Ensemble machine learning on gene expression data for cancer classification. Applied bioinformatics. 2003; 2(3 Suppl):S75-83.
-
(2003)
Applied bioinformatics
, vol.2
, Issue.3
, pp. S75-S83
-
-
Tan, A.C.1
Gilbert, D.2
|