Seamless R and C++ integration with Rcpp

Seamless R and C++ Integration with Rcpp

Volumn , Issue , 2013, Pages 1-220

  Eddelbuettel, Dirk ^a  

^a University River Forest   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DATA TRANSFER; EFFICIENCY; INFORMATION MANAGEMENT; INTEGRATION; MACHINERY; MATRIX ALGEBRA; OPEN SOURCE SOFTWARE;

COMPUTATIONAL RESEARCHES; GNU SCIENTIFIC LIBRARY; HIGH PERFORMANCE COMPUTING; INDISPENSABLE RESOURCES; MATHEMATICAL ECONOMICS; SCIENTIFIC COMPUTATION; SCIENTIFIC PROGRAMMING; STATISTICAL COMPUTING;

C++ (PROGRAMMING LANGUAGE);

EID: 85026292301     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4614-6868-4     Document Type: Book

References (61)

1. Abrahams D, Grosse-Kunstleve RW (2003) Building Hybrid Systems with Boost.Python. Boost Consulting, URL http://www.boostpro.com/ writing/bpl.pdf
2. Abrahams D, Gurtovoy A (2004) C++ Template Metaprogramming: Concepts, Tools and Techniques from Boost and Beyond. Addison-Wesley, Boston
3. Adler D (2012) rdyncall: Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries. URL http://CRAN.R-Project.org/ package=rdyncall, R package version 0.7.5
4. Albert C, Vogel S (2012) GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model. URL http://CRAN.R-Project.org/package=GUTS, R package version 0.2.8
5. Armstrong W (2009a) RAbstraction: C++ abstraction for R objects. URL http:// github.com/armstrtw/rabstraction, code repository last updated July 22, 2009.
6. Armstrong W (2009b) RObjects: C++ wrapper for R objects (a better implementation of RAbstraction). URL http://github.com/armstrtw/ RObjects, code repository last updated November 28, 2009.
7. Auguie B (2012a) cda: Couple dipole approximation. URL http://CRAN. R-Project.org/package=cda, R package version 1.2.1
8. Auguie B (2012b) planar:Multilayer optics. URL http://CRAN.R-Project. org/package=planar, R package version 1.2.4
9. Austen MH (1999) Generic Programming and the STL: Using and Extending the C++ Standard Template Library. Addison-Wesley
10. Bates D, DebRoy S (2001) C++ classes for R objects. In: Hornik K, Leisch F (eds) Proceedings of the 2nd International Workshop on Distributed Statistical Computing (DSC 2001), TU Vienna, Austria
11. Bates D, Eddelbuettel D (2013) Fast and elegant numerical linear algebra using the RcppEigen package. Journal of Statistical Software 52(5), URL http://www. jstatsoft.org/v52/i05
12. Bates D, François R, Eddelbuettel D (2012) RcppEigen: Rcpp integration for the Eigen templated linear algebra library. URL http://CRAN.R-Project. org/package=RcppEigen, R package version 0.3.1.2
13. Brokken FB (2012) C++ annotations. Electronic book, University of Groningen, URL http://www.icce.rug.nl/documents/cplusplus/, version 9.4.0, accessed 2012-11-24.
14. Chambers JM (1998) Programming with Data: A Guide to the S Language. Springer, Heidelberg, ISBN 978-0387985039
15. Chambers JM (2008) Software for Data Analysis: Programming with R. Statistics and Computing, Springer, Heidelberg, ISBN 978-0-387-75935-7
16. Chambers JM, Hastie TJ (1992) Statistical Models in S. Chapman & Hall, London
17. Eddelbuettel D (2012a) RcppCNPy: Rcpp bindings for NumPy files. URL http://CRAN.R-Project.org/package=RcppCNPy, R package version 0.2.0
18. Eddelbuettel D (2012b) RcppDE: Global optimization by differential evolution in C++. URL http://CRAN.R-Project.org/package=RcppDE, R package version 0.1.1
19. Eddelbuettel D, François R (2012a) Rcpp: Seamless R and C++ Integration. URL http://CRAN.R-Project.org/package=Rcpp, R package version 0.10.0
20. Eddelbuettel D, François R (2012b) RcppBDT: Rcpp binding for the Boost Date Time library. URL http://CRAN.R-Project.org/ package=RcppBDT, R package version 0.2.1
21. Eddelbuettel D, François R (2012c) RcppClassic: Deprecated 'classic' Rcpp API. URL http://CRAN.R-Project.org/package=RcppClassic, R package version 0.9.2
22. Eddelbuettel D, François R (2012d) RInside: C++ classes to embed R in C++ applications. URL http://CRAN.R-Project.org/package=RInside,R package version 0.2.7
23. Eddelbuettel D, Nguyen K (2012) RQuantLib: R interface to the QuantLib library. URL http://CRAN.R-Project.org/package=RQuantLib, R package version 0.3.9
24. Eddelbuettel D, Sanderson C (2013) RcppArmadillo: Accelerating R with highperformance C++ linear algebra. Computational Statistics and Data Analysis (in press)
25. Fellows I (2012) wordcloud: Word clouds. URL http://CRAN.R-Project. org/package=wordcloud, R package version 2.2
26. François R (2012a) highlight: Syntax highlighter. URL http://CRAN. R-Project.org/package=highlight, R package version 0.3-2
27. François R (2012b) parser: Detailed R source code parser. URL http://CRAN. R-Project.org/package=parser, R package version 0.1
28. François R, Eddelbuettel D (2010) RcppGSL: Rcpp integration for GNU GSL vectors and matrices. URL http://CRAN.R-Project.org/ package=RcppGSL, R package version 0.2.0
29. François R, Eddelbuettel D, Bates D (2012) RcppArmadillo: Rcpp integration for Armadillo templated linear algebra library. URL http://CRAN. R-Project.org/package=RcppArmadillo, R package version 0.3.4.4
30. Galassi M, Davies J, Theiler J, Gough B, Jungman G, Alken P, Booth M, Rossi F (2010) GNU Scientific Library Reference Manual. 3rd edn, URL http:// www.gnu.org/software/gsl, version 1.14. ISBN 0954612078
31. Gentleman R (2009) R Programming for Bioinformatics. Computer Science and Data Analysis, Chapman & Hall/CRC, Boca Raton, FL
32. Gropp W, Lusk E, Doss N, Skjellum A (1996) A high-performance, portable implementation of the MPI message passing interface standard. Parallel Computing 22(6):789-828, URL http://dx.doi.org/10.1016/ 0167-8191(96)00024-5
33. Gropp W, Lusk E, Skjellum A (1999) Using MPI: Portable Parallel Programming with the Message Passing Interface, 2nd edn. Scientific and Engineering Computation Series, MIT Press, ISBN 978-0-262-57132-6
34. Guennebaud G, Jacob B, et al (2012) Eigen v3. URL http://eigen. tuxfamily.org
35. Hankin RKS (2011) gsl: Wrapper for the Gnu Scientific Library. URL http:// CRAN.R-Project.org/package=gsl, R package version 1.9-9
36. Java JJ, Gaile DP,Manly KE (2007) R/Cpp: Interface classes to simplify using R objects in C++ extensions, URL http://sphhp.buffalo.edu/biostat/ research/techreports/UB_Biostatistics_TR0702.pdf, unpublished manuscript, University at Buffalo
37. Jurka TP, Tsuruoka Y (2012) maxent: Low-memory Multinomial Logistic Regression with Support for Text Classification. URL http://CRAN.R-Project. org/package=maxent, R package version 1.3.2
38. King M, Diaz FC (2011) RSofia: Port of sofia-ml to R. URL http://CRAN. R-Project.org/package=RSofia, R package version 1.1
39. Kusnierczyk W (2012) rbenchmark: Benchmarking routine for R. URL http:// CRAN.R-Project.org/package=rbenchmark, R package version 1.0
40. Leisch F (2008) Tutorial on Creating R Packages. In: Brito P (ed) COMPSTAT 2008 - Proceedings in Computational Statistics, Physica Verlag, Heidelberg, Germany, URL http://CRAN.R-Project.org/doc/contrib/ Leisch-CreatingPackages.pdf
41. Liang G (2008) rcppbind:A template library for R/C++ developers.URL http:// R-Forge.R-Project.org/projects/rcppbind, R package version 1.0
42. Lippman SB, Lajoie J, Moo BE (2005) The C++ Primer, 4th edn. Addison-Wesley
43. Matloff N (2011) The Art of R Programming:A Tour of Statistical Software Design. No Starch Press, San Francisco, CA
44. Meyers S (1995) More Effective C++: 35 New Ways to Improve Your Programs and Designs. Addison-Wesley Longman Publishing Co., Inc., Boston, MA, USA, ISBN 020163371X
45. Meyers S (2001) Effective STL: 50 specific ways to improve your use of the standard template library. Addison-Wesley Longman Ltd., Essex, UK, ISBN 0-201- 74962-9
46. Meyers S (2005) Effective C++: 55 Specific Ways to Improve Your Programs and Designs, 3rd edn. Addison-Wesley Professional, ISBN 978-0321334879
47. R Development Core Team (2012a) R Installation and Administration. R Foundation for Statistical Computing, Vienna, Austria, URL http://CRAN. R-Project.org/doc/manuals/R-admin.html, ISBN 3-900051-09-7
48. R Development Core Team (2012b) R internals. R Foundation for Statistical Computing, Vienna, Austria, URL http://CRAN.R-Project.org/doc/ manuals/R-ints.html, ISBN 3-900051-14-3
49. R Development Core Team (2012c) R language. R Foundation for Statistical Computing, Vienna, Austria, URL http://CRAN.R-Project.org/doc/ manuals/R-lang.html, ISBN 3-900051-13-5
50. R Development Core Team (2012d)Writing R extensions. R Foundation for Statistical Computing, Vienna, Austria, URL http://CRAN.R-Project.org/ doc/manuals/R-exts.html, ISBN 3-900051-11-9
51. Runnalls A (2009) Aspects of CXXR internals. In: Directions in Statistical Computing, University of Copenhagen, Denmark
52. Sanderson C (2010) Armadillo: An open source C++ algebra library for fast prototyping and computationally intensive experiments. Tech. rep., NICTA, URL http://arma.sf.net
53. Sklyar O, Murdoch D, Smith M, Eddelbuettel D, François R (2012) inline: Inline C, C++, Fortran function calls from R. URL http://CRAN.R-Project.org/ package=inline, R package version 0.3.10
54. Stroustrup B (1997) The C++ Programming Language, 3rd edn. Addison-Wesley
55. Temple Lang D (2009a) A modest proposal: an approach to making the internal R system extensible. Computational Statistics 24(2):271-281
56. Temple Lang D (2009b)Working with meta-data from C/C++ code in R: the RGCCTranslationUnit package. Computational Statistics 24(2):283-293
57. Thomas A, Redd A (2012) transmission: Continuous time infectious disease models on individual data. URL http://CRAN.R-Project.org/ package=transmission, R package version 0.1
58. Urbanek S (2003) Rserve: A fast way to provide R functionality to applications. In: Hornik K, Leisch F, Zeileis A (eds) Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003), TU Vienna, Austria
59. Urbanek S (2012) Rserve: Binary R server. URL http://CRAN.R-Project. org/package=Rserve, R package version 0.6-8
60. Vandevoorde D, Josuttis NM (2003) C++ Templates: The Complete Guide. Addison-Wesley, Boston
61. Venables WN, Ripley BD (2000) S Programming. Statistics and Computing, Springer-Verlag, New York