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Volumn 18, Issue 2, 2016, Pages 283-298

Robust Detection of DNA Hypermethylation of ZNF154 as a Pan-Cancer Locus with in Silico Modeling for Blood-Based Diagnostic Development

Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE; DNA; PAN CANCER MARKER; TUMOR MARKER; UNCLASSIFIED DRUG; HYDROGEN SULFITE; KRUPPEL LIKE FACTOR; SULFITE; ZNF154 PROTEIN, HUMAN;

EID: 84960803239     PISSN: 15251578     EISSN: 19437811     Source Type: Journal    
DOI: 10.1016/j.jmoldx.2015.11.004     Document Type: Article
Times cited : (36)

References (41)
  • 2
    • 84899484919 scopus 로고    scopus 로고
    • Annual Report to the Nation on the status of cancer, 1975-2010, featuring prevalence of comorbidity and impact on survival among persons with lung, colorectal, breast, or prostate cancer
    • B.K. Edwards, A.M. Noone, A.B. Mariotto, E.P. Simard, F.P. Boscoe, S.J. Henley, A. Jemal, H. Cho, R.N. Anderson, B.A. Kohler, C.R. Eheman, and E.M. Ward Annual Report to the Nation on the status of cancer, 1975-2010, featuring prevalence of comorbidity and impact on survival among persons with lung, colorectal, breast, or prostate cancer Cancer 120 2014 1290 1314
    • (2014) Cancer , vol.120 , pp. 1290-1314
    • Edwards, B.K.1    Noone, A.M.2    Mariotto, A.B.3    Simard, E.P.4    Boscoe, F.P.5    Henley, S.J.6    Jemal, A.7    Cho, H.8    Anderson, R.N.9    Kohler, B.A.10    Eheman, C.R.11    Ward, E.M.12
  • 3
    • 84928215966 scopus 로고    scopus 로고
    • Do circulating tumor cells, exosomes, and circulating tumor nucleic acids have clinical utility?
    • B. Gold, M. Cankovic, L.V. Furtado, F. Meier, and C.D. Gocke Do circulating tumor cells, exosomes, and circulating tumor nucleic acids have clinical utility? J Mol Diagn 17 2015 209 224
    • (2015) J Mol Diagn , vol.17 , pp. 209-224
    • Gold, B.1    Cankovic, M.2    Furtado, L.V.3    Meier, F.4    Gocke, C.D.5
  • 4
    • 84923642506 scopus 로고    scopus 로고
    • DNA methylation biomarkers: Cancer and beyond
    • T. Mikeska, and J.M. Craig DNA methylation biomarkers: cancer and beyond Genes (Basel) 5 2014 821 864
    • (2014) Genes (Basel) , vol.5 , pp. 821-864
    • Mikeska, T.1    Craig, J.M.2
  • 5
    • 84896371874 scopus 로고    scopus 로고
    • Detection of circulating tumor DNA in early- and late-stage human malignancies
    • C. Bettegowda, M. Sausen, R.J. Leary, I. Kinde, Y. Wang, N. Agrawal, and et al. Detection of circulating tumor DNA in early- and late-stage human malignancies Sci Transl Med 6 2014 224ra24
    • (2014) Sci Transl Med , vol.6 , pp. 224ra24
    • Bettegowda, C.1    Sausen, M.2    Leary, R.J.3    Kinde, I.4    Wang, Y.5    Agrawal, N.6
  • 7
    • 84862535291 scopus 로고    scopus 로고
    • DNA methylation biomarkers in cancer: Progress towards clinical implementation
    • T. Mikeska, C. Bock, H. Do, and A. Dobrovic DNA methylation biomarkers in cancer: progress towards clinical implementation Expert Rev Mol Diagn 12 2012 473 487
    • (2012) Expert Rev Mol Diagn , vol.12 , pp. 473-487
    • Mikeska, T.1    Bock, C.2    Do, H.3    Dobrovic, A.4
  • 8
    • 84888810517 scopus 로고    scopus 로고
    • Recurrent patterns of DNA methylation in the ZNF154, CASP8, and VHL promoters across a wide spectrum of human solid epithelial tumors and cancer cell lines
    • F. Sánchez-Vega, V. Gotea, H.M. Petrykowska, G. Margolin, T.C. Krivak, J.A. DeLoia, D.W. Bell, and L. Elnitski Recurrent patterns of DNA methylation in the ZNF154, CASP8, and VHL promoters across a wide spectrum of human solid epithelial tumors and cancer cell lines Epigenetics 8 2013 1355 1372
    • (2013) Epigenetics , vol.8 , pp. 1355-1372
    • Sánchez-Vega, F.1    Gotea, V.2    Petrykowska, H.M.3    Margolin, G.4    Krivak, T.C.5    DeLoia, J.A.6    Bell, D.W.7    Elnitski, L.8
  • 9
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
    • F. Krueger, and S.R. Andrews Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications Bioinformatics 27 2011 1571 1572
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 10
    • 84885368581 scopus 로고    scopus 로고
    • Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing
    • D.R. Masser, A.S. Berg, and W.M. Freeman Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing Epigenetics Chromatin 6 2013 33
    • (2013) Epigenetics Chromatin , vol.6 , pp. 33
    • Masser, D.R.1    Berg, A.S.2    Freeman, W.M.3
  • 12
    • 43949083703 scopus 로고    scopus 로고
    • Comparison of non-parametric confidence intervals for the area under the ROC curve of a continuous-scale diagnostic test
    • G. Qin, and L. Hotilovac Comparison of non-parametric confidence intervals for the area under the ROC curve of a continuous-scale diagnostic test Stat Methods Med Res 17 2008 207 221
    • (2008) Stat Methods Med Res , vol.17 , pp. 207-221
    • Qin, G.1    Hotilovac, L.2
  • 14
    • 33646023117 scopus 로고    scopus 로고
    • An introduction to ROC analysis
    • T. Fawcett An introduction to ROC analysis Pattern Recognit Lett 27 2006 861 874
    • (2006) Pattern Recognit Lett , vol.27 , pp. 861-874
    • Fawcett, T.1
  • 16
    • 84891764656 scopus 로고    scopus 로고
    • NGSmethDB: An updated genome resource for high quality, single-cytosine resolution methylomes
    • S. Geisen, G. Barturen, Á.M. Alganza, M. Hackenberg, and J.L. Oliver NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes Nucleic Acids Res 42 2014 D53 D59
    • (2014) Nucleic Acids Res , vol.42 , pp. D53-D59
    • Geisen, S.1    Barturen, G.2    Alganza, Á.M.3    Hackenberg, M.4    Oliver, J.L.5
  • 17
    • 34247113143 scopus 로고    scopus 로고
    • A new method for accurate assessment of DNA quality after bisulfite treatment
    • M. Ehrich, S. Zoll, S. Sur, and D. van den Boom A new method for accurate assessment of DNA quality after bisulfite treatment Nucleic Acids Res 35 2007 e29
    • (2007) Nucleic Acids Res , vol.35 , pp. e29
    • Ehrich, M.1    Zoll, S.2    Sur, S.3    Van Den Boom, D.4
  • 18
    • 84892920228 scopus 로고    scopus 로고
    • Characterizing DNA methylation alterations from the cancer genome atlas
    • D.J. Weisenberger Characterizing DNA methylation alterations from the cancer genome atlas J Clin Invest 124 2014 17 23
    • (2014) J Clin Invest , vol.124 , pp. 17-23
    • Weisenberger, D.J.1
  • 25
    • 84872564830 scopus 로고    scopus 로고
    • A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
    • A.E. Teschendorff, F. Marabita, M. Lechner, T. Bartlett, J. Tegner, D. Gomez-Cabrero, and S. Beck A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data Bioinformatics 29 2013 189 196
    • (2013) Bioinformatics , vol.29 , pp. 189-196
    • Teschendorff, A.E.1    Marabita, F.2    Lechner, M.3    Bartlett, T.4    Tegner, J.5    Gomez-Cabrero, D.6    Beck, S.7
  • 26
    • 0037822222 scopus 로고    scopus 로고
    • Asymptotic behaviors of support vector machines with Gaussian kernel
    • S.S. Keerthi, and C.-J. Lin Asymptotic behaviors of support vector machines with Gaussian kernel Neural Comput 15 2003 1667 1689
    • (2003) Neural Comput , vol.15 , pp. 1667-1689
    • Keerthi, S.S.1    Lin, C.-J.2
  • 31
    • 33845476677 scopus 로고    scopus 로고
    • Circulating nucleic acids (CNAs) and cancer-a survey
    • M. Fleischhacker, and B. Schmidt Circulating nucleic acids (CNAs) and cancer-a survey Biochim Biophys Acta 1775 2007 181 232
    • (2007) Biochim Biophys Acta , vol.1775 , pp. 181-232
    • Fleischhacker, M.1    Schmidt, B.2
  • 33
    • 0035866393 scopus 로고    scopus 로고
    • DNA fragments in the blood plasma of cancer patients: Quantitations and evidence for their origin from apoptotic and necrotic cells
    • S. Jahr, H. Hentze, S. Englisch, D. Hardt, F.O. Fackelmayer, R.D. Hesch, and R. Knippers DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells Cancer Res 61 2001 1659 1665
    • (2001) Cancer Res , vol.61 , pp. 1659-1665
    • Jahr, S.1    Hentze, H.2    Englisch, S.3    Hardt, D.4    Fackelmayer, F.O.5    Hesch, R.D.6    Knippers, R.7
  • 35
    • 77951039961 scopus 로고    scopus 로고
    • DNA methylation based biomarkers in non-invasive cancer screening
    • N. Shivapurkar, and A.F. Gazdar DNA methylation based biomarkers in non-invasive cancer screening Curr Mol Med 10 2010 123 132
    • (2010) Curr Mol Med , vol.10 , pp. 123-132
    • Shivapurkar, N.1    Gazdar, A.F.2
  • 36
    • 79957458567 scopus 로고    scopus 로고
    • Cell-free nucleic acids as biomarkers in cancer patients
    • H. Schwarzenbach, D.S.B. Hoon, and K. Pantel Cell-free nucleic acids as biomarkers in cancer patients Nat Rev Cancer 11 2011 426 437
    • (2011) Nat Rev Cancer , vol.11 , pp. 426-437
    • Schwarzenbach, H.1    Hoon, D.S.B.2    Pantel, K.3
  • 37
    • 84906858657 scopus 로고    scopus 로고
    • DNA methylation as an early diagnostic marker of cancer (Review)
    • Y. Dong, H. Zhao, H. Li, X. Li, and S. Yang DNA methylation as an early diagnostic marker of cancer (Review) Biomed Rep 2 2014 326 330
    • (2014) Biomed Rep , vol.2 , pp. 326-330
    • Dong, Y.1    Zhao, H.2    Li, H.3    Li, X.4    Yang, S.5
  • 39
    • 3442894720 scopus 로고    scopus 로고
    • Quantitative detection of promoter hypermethylation of multiple genes in the tumor, urine, and serum DNA of patients with renal cancer
    • M.O. Hoque, S. Begum, O. Topaloglu, C. Jeronimo, E. Mambo, W.H. Westra, J.A. Califano, and D. Sidransky Quantitative detection of promoter hypermethylation of multiple genes in the tumor, urine, and serum DNA of patients with renal cancer Cancer Res 64 2004 5511 5517
    • (2004) Cancer Res , vol.64 , pp. 5511-5517
    • Hoque, M.O.1    Begum, S.2    Topaloglu, O.3    Jeronimo, C.4    Mambo, E.5    Westra, W.H.6    Califano, J.A.7    Sidransky, D.8
  • 41
    • 84929069769 scopus 로고    scopus 로고
    • Quantification of epigenetic biomarkers: An evaluation of established and emerging methods for DNA methylation analysis
    • N. Redshaw, J.F. Huggett, M.S. Taylor, C.A. Foy, and A.S. Devonshire Quantification of epigenetic biomarkers: an evaluation of established and emerging methods for DNA methylation analysis BMC Genomics 15 2014 1174
    • (2014) BMC Genomics , vol.15 , pp. 1174
    • Redshaw, N.1    Huggett, J.F.2    Taylor, M.S.3    Foy, C.A.4    Devonshire, A.S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.