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Volumn 20, Issue 5, 2014, Pages 548-554

An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULATING TUMOR DNA; DNA; TUMOR MARKER; UNCLASSIFIED DRUG;

EID: 84903218109     PISSN: 10788956     EISSN: 1546170X     Source Type: Journal    
DOI: 10.1038/nm.3519     Document Type: Article
Times cited : (1692)

References (43)
  • 1
    • 81855208762 scopus 로고    scopus 로고
    • Quantitative detection of EGFR mutations in circulating tumor DNA derived from lung adenocarcinomas
    • Taniguchi, K. et al. Quantitative detection of EGFR mutations in circulating tumor DNA derived from lung adenocarcinomas. Clin. Cancer Res. 17, 7808-7815 (2011).
    • (2011) Clin. Cancer Res. , vol.17 , pp. 7808-7815
    • Taniguchi, K.1
  • 2
    • 69949186250 scopus 로고    scopus 로고
    • Screening for epidermal growth factor receptor mutations in lung cancer
    • Rosell, R. et al. Screening for epidermal growth factor receptor mutations in lung cancer. N. Engl. J. Med. 361, 958-967 (2009).
    • (2009) N. Engl. J. Med. , vol.361 , pp. 958-967
    • Rosell, R.1
  • 3
    • 65249127504 scopus 로고    scopus 로고
    • Noninvasive detection of EGFR T790M in gefitinib or erlotinib resistant non-small cell lung cancer
    • Kuang, Y. et al. Noninvasive detection of EGFR T790M in gefitinib or erlotinib resistant non-small cell lung cancer. Clin. Cancer Res. 15, 2630-2636 (2009).
    • (2009) Clin. Cancer Res. , vol.15 , pp. 2630-2636
    • Kuang, Y.1
  • 4
    • 34547183500 scopus 로고    scopus 로고
    • Origin and prognostic value of circulating KRAS mutations in lung cancer patients
    • Gautschi, O. et al. Origin and prognostic value of circulating KRAS mutations in lung cancer patients. Cancer Lett. 254, 265-273 (2007).
    • (2007) Cancer Lett. , vol.254 , pp. 265-273
    • Gautschi, O.1
  • 5
    • 77952962769 scopus 로고    scopus 로고
    • Development of personalized tumor biomarkers using massively parallel sequencing
    • Leary, R.J. et al. Development of personalized tumor biomarkers using massively parallel sequencing. Sci. Transl. Med. 2, 20ra14 (2010).
    • (2010) Sci. Transl. Med. , vol.2 , pp. 20ra14
    • Leary, R.J.1
  • 6
    • 77957911880 scopus 로고    scopus 로고
    • Use of cancer-specific genomic rearrangements to quantify disease burden in plasma from patients with solid tumors
    • McBride, D.J. et al. Use of cancer-specific genomic rearrangements to quantify disease burden in plasma from patients with solid tumors. Genes Chromosom. Cancer 49, 1062-1069 (2010).
    • (2010) Genes Chromosom. Cancer , vol.49 , pp. 1062-1069
    • McBride, D.J.1
  • 7
    • 80052068665 scopus 로고    scopus 로고
    • IgH gene rearrangements as plasma biomarkers in non-hodgkin's lymphoma patients
    • He, J. et al. IgH gene rearrangements as plasma biomarkers in non-Hodgkin's lymphoma patients. Oncotarget 2, 178-185 (2011).
    • (2011) Oncotarget , vol.2 , pp. 178-185
    • He, J.1
  • 8
    • 84861746437 scopus 로고    scopus 로고
    • Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA
    • Forshew, T. et al. Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA. Sci. Transl. Med. 4, 136ra168 (2012).
    • (2012) Sci. Transl. Med. , vol.4 , pp. 136ra168
    • Forshew, T.1
  • 9
    • 84870312106 scopus 로고    scopus 로고
    • Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing
    • Leary, R.J. et al. Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing. Sci. Transl. Med. 4, 162ra154 (2012).
    • (2012) Sci. Transl. Med. , vol.4 , pp. 162ra154
    • Leary, R.J.1
  • 10
    • 84863967346 scopus 로고    scopus 로고
    • Ultrasensitive measurement of hotspot mutations in tumor DNA in blood using error-suppressed multiplexed deep sequencing
    • Narayan, A. et al. Ultrasensitive measurement of hotspot mutations in tumor DNA in blood using error-suppressed multiplexed deep sequencing. Cancer Res. 72, 3492-3498 (2012).
    • (2012) Cancer Res. , vol.72 , pp. 3492-3498
    • Narayan, A.1
  • 11
    • 84875520648 scopus 로고    scopus 로고
    • Analysis of circulating tumor DNA to monitor metastatic breast cancer
    • Dawson, S.J. et al. Analysis of circulating tumor DNA to monitor metastatic breast cancer. N. Engl. J. Med. 368, 1199-1209 (2013).
    • (2013) N. Engl. J. Med. , vol.368 , pp. 1199-1209
    • Dawson, S.J.1
  • 12
    • 84877579861 scopus 로고    scopus 로고
    • Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA
    • Murtaza, M. et al. Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature 497, 108-112 (2013).
    • (2013) Nature , vol.497 , pp. 108-112
    • Murtaza, M.1
  • 14
    • 75549087826 scopus 로고    scopus 로고
    • COSMIC (the catalogue of somatic mutations in cancer): A resource to investigate acquired mutations in human cancer
    • Forbes, S.A. et al. COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer. Nucleic Acids Res. 38, D652-D657 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. D652-D657
    • Forbes, S.A.1
  • 15
    • 54549094903 scopus 로고    scopus 로고
    • Somatic mutations affect key pathways in lung adenocarcinoma
    • Ding, L. et al. Somatic mutations affect key pathways in lung adenocarcinoma. Nature 455, 1069-1075 (2008).
    • (2008) Nature , vol.455 , pp. 1069-1075
    • Ding, L.1
  • 16
    • 78651439545 scopus 로고    scopus 로고
    • Identifying cancer driver genes in tumor genome sequencing studies
    • Youn, A. & Simon, R. Identifying cancer driver genes in tumor genome sequencing studies. Bioinformatics 27, 175-181 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 175-181
    • Youn, A.1    Simon, R.2
  • 17
    • 84863338079 scopus 로고    scopus 로고
    • ROS1 rearrangements define a unique molecular class of lung cancers
    • Bergethon, K. et al. ROS1 rearrangements define a unique molecular class of lung cancers. J. Clin. Oncol. 30, 863-870 (2012).
    • (2012) J. Clin. Oncol. , vol.30 , pp. 863-870
    • Bergethon, K.1
  • 18
    • 78049425319 scopus 로고    scopus 로고
    • Anaplastic lymphoma kinase inhibition in non-small-cell lung cancer
    • Kwak, E.L. et al. Anaplastic lymphoma kinase inhibition in non-small-cell lung cancer. N. Engl. J. Med. 363, 1693-1703 (2010).
    • (2010) N. Engl. J. Med. , vol.363 , pp. 1693-1703
    • Kwak, E.L.1
  • 19
    • 84857969863 scopus 로고    scopus 로고
    • Chipping away at the lung cancer genome
    • Pao, W. & Hutchinson, K.E. Chipping away at the lung cancer genome. Nat. Med. 18, 349-351 (2012).
    • (2012) Nat. Med. , vol.18 , pp. 349-351
    • Pao, W.1    Hutchinson, K.E.2
  • 20
    • 84866410479 scopus 로고    scopus 로고
    • Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing
    • Imielinski, M. et al. Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing. Cell 150, 1107-1120 (2012).
    • (2012) Cell , vol.150 , pp. 1107-1120
    • Imielinski, M.1
  • 21
    • 84866434919 scopus 로고    scopus 로고
    • Genomic landscape of non-small cell lung cancer in smokers and never-smokers
    • Govindan, R. et al. Genomic landscape of non-small cell lung cancer in smokers and never-smokers. Cell 150, 1121-1134 (2012).
    • (2012) Cell , vol.150 , pp. 1121-1134
    • Govindan, R.1
  • 22
    • 48249114422 scopus 로고    scopus 로고
    • EML4-ALK fusion gene and efficacy of an ALK kinase inhibitor in lung cancer
    • Koivunen, J.P. et al. EML4-ALK fusion gene and efficacy of an ALK kinase inhibitor in lung cancer. Clin. Cancer Res. 14, 4275-4283 (2008).
    • (2008) Clin. Cancer Res. , vol.14 , pp. 4275-4283
    • Koivunen, J.P.1
  • 23
    • 36849065315 scopus 로고    scopus 로고
    • Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
    • Rikova, K. et al. Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer. Cell 131, 1190-1203 (2007).
    • (2007) Cell , vol.131 , pp. 1190-1203
    • Rikova, K.1
  • 24
    • 55849124028 scopus 로고    scopus 로고
    • Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood
    • Fan, H.C., Blumenfeld, Y.J., Chitkara, U., Hudgins, L. & Quake, S.R. Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood. Proc. Natl. Acad. Sci. USA 105, 16266-16271 (2008).
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 16266-16271
    • Fan, H.C.1    Blumenfeld, Y.J.2    Chitkara, U.3    Hudgins, L.4    Quake, S.R.5
  • 25
    • 78651079558 scopus 로고    scopus 로고
    • A platform for rapid detection of multiple oncogenic mutations with relevance to targeted therapy in non-small-cell lung cancer
    • Su, Z. et al. A platform for rapid detection of multiple oncogenic mutations with relevance to targeted therapy in non-small-cell lung cancer. J. Mol. Diagn. 13, 74-84 (2011).
    • (2011) J. Mol. Diagn. , vol.13 , pp. 74-84
    • Su, Z.1
  • 26
    • 13844317894 scopus 로고    scopus 로고
    • EGFR mutation and resistance of non-small-cell lung cancer to gefitinib
    • Kobayashi, S. et al. EGFR mutation and resistance of non-small-cell lung cancer to gefitinib. N. Engl. J. Med. 352, 786-792 (2005).
    • (2005) N. Engl. J. Med. , vol.352 , pp. 786-792
    • Kobayashi, S.1
  • 27
    • 84871425894 scopus 로고    scopus 로고
    • Stereotactic ablative radiotherapy for non-small cell lung cancer: Rationale and outcomes
    • Iyengar, P. & Timmerman, R.D. Stereotactic ablative radiotherapy for non-small cell lung cancer: rationale and outcomes. J. Natl. Compr. Canc. Netw. 10, 1514-1520 (2012).
    • (2012) J. Natl. Compr. Canc. Netw. , vol.10 , pp. 1514-1520
    • Iyengar, P.1    Timmerman, R.D.2
  • 29
    • 79961108629 scopus 로고    scopus 로고
    • Reduced lung-cancer mortality with low-dose computed tomographic screening
    • Aberle, D.R. et al. Reduced lung-cancer mortality with low-dose computed tomographic screening. N. Engl. J. Med. 365, 395-409 (2011).
    • (2011) N. Engl. J. Med. , vol.365 , pp. 395-409
    • Aberle, D.R.1
  • 30
    • 28044468634 scopus 로고    scopus 로고
    • Detection and quantification of mutations in the plasma of patients with colorectal tumors
    • Diehl, F. et al. Detection and quantification of mutations in the plasma of patients with colorectal tumors. Proc. Natl. Acad. Sci. USA 102, 16368-16373 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 16368-16373
    • Diehl, F.1
  • 31
    • 48549105413 scopus 로고    scopus 로고
    • Analysis of mutations in DNA isolated from plasma and stool of colorectal cancer patients
    • Diehl, F. et al. Analysis of mutations in DNA isolated from plasma and stool of colorectal cancer patients. Gastroenterology 135, 489-498 (2008).
    • (2008) Gastroenterology , vol.135 , pp. 489-498
    • Diehl, F.1
  • 32
    • 84872020299 scopus 로고    scopus 로고
    • Cancer genome scanning in plasma: Detection of tumor-associated copy number aberrations, single-nucleotide variants, and tumoral heterogeneity by massively parallel sequencing
    • Chan, K.C. et al. Cancer genome scanning in plasma: detection of tumor-associated copy number aberrations, single-nucleotide variants, and tumoral heterogeneity by massively parallel sequencing. Clin. Chem. 59, 211-224 (2013).
    • (2013) Clin. Chem. , vol.59 , pp. 211-224
    • Chan, K.C.1
  • 33
    • 84875824898 scopus 로고    scopus 로고
    • Tumor associated copy number changes in the circulation of patients with prostate cancer identified through whole-genome sequencing
    • Heitzer, E. et al. Tumor associated copy number changes in the circulation of patients with prostate cancer identified through whole-genome sequencing. Genome Med. 5, 30 (2013).
    • (2013) Genome Med. , vol.5 , pp. 30
    • Heitzer, E.1
  • 34
    • 84865979581 scopus 로고    scopus 로고
    • Detection of ultra-rare mutations by next-generation sequencing
    • Schmitt, M.W. et al. Detection of ultra-rare mutations by next-generation sequencing. Proc. Natl. Acad. Sci. USA 109, 14508-14513 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 14508-14513
    • Schmitt, M.W.1
  • 35
    • 84856398949 scopus 로고    scopus 로고
    • Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes
    • Shiroguchi, K., Jia, T.Z., Sims, P.A. & Xie, X.S. Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes. Proc. Natl. Acad. Sci. USA 109, 1347-1352 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 1347-1352
    • Shiroguchi, K.1    Jia, T.Z.2    Sims, P.A.3    Xie, X.S.4
  • 36
    • 84856448155 scopus 로고    scopus 로고
    • Optimal enzymes for amplifying sequencing libraries
    • Quail, M.A. et al. Optimal enzymes for amplifying sequencing libraries. Nat. Methods 9, 10-11 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 10-11
    • Quail, M.A.1
  • 37
    • 84855219212 scopus 로고    scopus 로고
    • Optimizing illumina next-generation sequencing library preparation for extremely AT-biased genomes
    • Oyola, S.O. et al. Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes. BMC Genomics 13, 1 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 1
    • Oyola, S.O.1
  • 38
    • 78650762588 scopus 로고    scopus 로고
    • A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
    • Fisher, S. et al. A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries. Genome Biol. 12, R1 (2011).
    • (2011) Genome Biol. , vol.12 , pp. R1
    • Fisher, S.1
  • 39
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrows-wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 40
    • 68549104404 scopus 로고    scopus 로고
    • The sequence Alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 41
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. & Hall, I.M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 42
    • 84863229597 scopus 로고    scopus 로고
    • Var scan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt, D.C. et al. Var Scan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22, 568-576 (2012).
    • (2012) Genome Res. , vol.22 , pp. 568-576
    • Koboldt, D.C.1


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