-
1
-
-
0028239805
-
Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure
-
[1] Arnez, J.G., Steitz, T.A., Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure. Biochemistry 33 (1994), 7560–7567.
-
(1994)
Biochemistry
, vol.33
, pp. 7560-7567
-
-
Arnez, J.G.1
Steitz, T.A.2
-
2
-
-
0028071999
-
Clustering of pseudouridine residues around the peptidyltransferase center of yeast cytoplasmic and mitochondrial ribosomes
-
[2] Bakin, A., Lane, B.G., Ofengand, J., Clustering of pseudouridine residues around the peptidyltransferase center of yeast cytoplasmic and mitochondrial ribosomes. Biochemistry 33 (1994), 13475–13483.
-
(1994)
Biochemistry
, vol.33
, pp. 13475-13483
-
-
Bakin, A.1
Lane, B.G.2
Ofengand, J.3
-
3
-
-
0027438034
-
Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique
-
[3] Bakin, A., Ofengand, J., Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique. Biochemistry 32 (1993), 9754–9762.
-
(1993)
Biochemistry
, vol.32
, pp. 9754-9762
-
-
Bakin, A.1
Ofengand, J.2
-
4
-
-
84908355976
-
A pseudouridine residue in the spliceosome core is part of the filamentous growth program in yeast
-
[4] Basak, A., Query, C.C., A pseudouridine residue in the spliceosome core is part of the filamentous growth program in yeast. Cell Rep. 8 (2014), 966–973.
-
(2014)
Cell Rep.
, vol.8
, pp. 966-973
-
-
Basak, A.1
Query, C.C.2
-
5
-
-
75649096366
-
Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy
-
[5] Baudin-Baillieu, A., Fabret, C., Liang, X.-H., Piekna-Przybylska, D., Fournier, M.J., Rousset, J.-P., Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy. Nucleic Acids Res. 37 (2009), 7665–7677.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 7665-7677
-
-
Baudin-Baillieu, A.1
Fabret, C.2
Liang, X.-H.3
Piekna-Przybylska, D.4
Fournier, M.J.5
Rousset, J.-P.6
-
6
-
-
0030772852
-
The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs
-
[6] Becker, H.F., Motorin, Y., Planta, R.J., Grosjean, H., The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs. Nucleic Acids Res. 25 (1997), 4493–4499.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4493-4499
-
-
Becker, H.F.1
Motorin, Y.2
Planta, R.J.3
Grosjean, H.4
-
7
-
-
0142147324
-
The Saccharomyces cerevisiae U2 snRNA:pseudouridine-synthase Pus7p is a novel multisite-multisubstrate RNA:Psi-synthase also acting on tRNAs
-
[7] Behm-Ansmant, I., Urban, A., Ma, X., Yu, Y.-T., Motorin, Y., Branlant, C., The Saccharomyces cerevisiae U2 snRNA:pseudouridine-synthase Pus7p is a novel multisite-multisubstrate RNA:Psi-synthase also acting on tRNAs. RNA 9 (2003), 1371–1382.
-
(2003)
RNA
, vol.9
, pp. 1371-1382
-
-
Behm-Ansmant, I.1
Urban, A.2
Ma, X.3
Yu, Y.-T.4
Motorin, Y.5
Branlant, C.6
-
8
-
-
84938955375
-
Pseudo-Seq: genome-wide detection of pseudouridine modifications in RNA
-
[8] Carlile, T.M., Rojas-Duran, M.F., Gilbert, W.V., Pseudo-Seq: genome-wide detection of pseudouridine modifications in RNA. Methods Enzymol. 560 (2015), 219–245.
-
(2015)
Methods Enzymol.
, vol.560
, pp. 219-245
-
-
Carlile, T.M.1
Rojas-Duran, M.F.2
Gilbert, W.V.3
-
9
-
-
84922180958
-
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
-
[9] Carlile, T.M., Rojas-Duran, M.F., Zinshteyn, B., Shin, H., Bartoli, K.M., Gilbert, W.V., Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells. Nature 515 (2014), 143–146.
-
(2014)
Nature
, vol.515
, pp. 143-146
-
-
Carlile, T.M.1
Rojas-Duran, M.F.2
Zinshteyn, B.3
Shin, H.4
Bartoli, K.M.5
Gilbert, W.V.6
-
10
-
-
79960226263
-
A method for counting PCR template molecules with application to next-generation sequencing
-
(e81–e81)
-
[10] Casbon, J.A., Osborne, R.J., Brenner, S., Lichtenstein, C.P., A method for counting PCR template molecules with application to next-generation sequencing. Nucleic Acids Res., 39, 2011 (e81–e81).
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Casbon, J.A.1
Osborne, R.J.2
Brenner, S.3
Lichtenstein, C.P.4
-
11
-
-
0033935223
-
Pseudouridine in RNA: what, where, how, and why
-
[11] Charette, M., Gray, M.W., Pseudouridine in RNA: what, where, how, and why. IUBMB Life 49 (2000), 341–351.
-
(2000)
IUBMB Life
, vol.49
, pp. 341-351
-
-
Charette, M.1
Gray, M.W.2
-
12
-
-
76949127533
-
Some results of the applications of ion-exchange chromatography to nucleic acid chemistry
-
[12] Cohn, W.E., Some results of the applications of ion-exchange chromatography to nucleic acid chemistry. J. Cell. Physiol. Suppl. 38 (1951), 21–40.
-
(1951)
J. Cell. Physiol. Suppl.
, vol.38
, pp. 21-40
-
-
Cohn, W.E.1
-
13
-
-
84893684258
-
28S rRNA is inducibly pseudouridylated by the mTOR pathway translational control in CHO cell cultures
-
[13] Courtes, F.C., Gu, C., Wong, N.S.C., Dedon, P.C., Yap, M.G.S., Lee, D.-Y., 28S rRNA is inducibly pseudouridylated by the mTOR pathway translational control in CHO cell cultures. J. Biotechnol. 174 (2014), 16–21.
-
(2014)
J. Biotechnol.
, vol.174
, pp. 16-21
-
-
Courtes, F.C.1
Gu, C.2
Wong, N.S.C.3
Dedon, P.C.4
Yap, M.G.S.5
Lee, D.-Y.6
-
14
-
-
0000568977
-
Ribonucleic acids from yeast which contain a fifth nucleotide
-
[14] Davis, F.F., Allen, F.W., Ribonucleic acids from yeast which contain a fifth nucleotide. J. Biol. Chem. 227 (1957), 907–915.
-
(1957)
J. Biol. Chem.
, vol.227
, pp. 907-915
-
-
Davis, F.F.1
Allen, F.W.2
-
15
-
-
0036629250
-
RRNA modifications and ribosome function
-
[15] Decatur, W.A., Fournier, M.J., RRNA modifications and ribosome function. Trends Biochem. Sci. 27 (2002), 344–351.
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 344-351
-
-
Decatur, W.A.1
Fournier, M.J.2
-
16
-
-
12844276454
-
Number, position, and significance of the pseudouridines in the large subunit ribosomal RNA of Haloarcula marismortui and Deinococcus radiodurans
-
[16] Del Campo, M., Recinos, C., Yanez, G., Pomerantz, S.C., Guymon, R., Crain, P.F., et al. Number, position, and significance of the pseudouridines in the large subunit ribosomal RNA of Haloarcula marismortui and Deinococcus radiodurans. RNA 11 (2005), 210–219.
-
(2005)
RNA
, vol.11
, pp. 210-219
-
-
Del Campo, M.1
Recinos, C.2
Yanez, G.3
Pomerantz, S.C.4
Guymon, R.5
Crain, P.F.6
-
17
-
-
84893427735
-
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
-
[17] Ding, Y., Tang, Y., Kwok, C.K., Zhang, Y., Bevilacqua, P.C., Assmann, S.M., In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features. Nature 505 (2014), 696–700.
-
(2014)
Nature
, vol.505
, pp. 696-700
-
-
Ding, Y.1
Tang, Y.2
Kwok, C.K.3
Zhang, Y.4
Bevilacqua, P.C.5
Assmann, S.M.6
-
18
-
-
40849139057
-
Improving CMC-derivatization of pseudouridine in RNA for mass spectrometric detection
-
[18] Durairaj, A., Limbach, P.A., Improving CMC-derivatization of pseudouridine in RNA for mass spectrometric detection. Anal. Chim. Acta 612 (2008), 173–181.
-
(2008)
Anal. Chim. Acta
, vol.612
, pp. 173-181
-
-
Durairaj, A.1
Limbach, P.A.2
-
19
-
-
84881477474
-
Unusual base pairing during the decoding of a stop codon by the ribosome
-
[19] Fernández, I.S., Ng, C.L., Kelley, A.C., Wu, G., Yu, Y.-T., Ramakrishnan, V., Unusual base pairing during the decoding of a stop codon by the ribosome. Nature 500 (2013), 107–110.
-
(2013)
Nature
, vol.500
, pp. 107-110
-
-
Fernández, I.S.1
Ng, C.L.2
Kelley, A.C.3
Wu, G.4
Yu, Y.-T.5
Ramakrishnan, V.6
-
20
-
-
79959327151
-
Counting individual DNA molecules by the stochastic attachment of diverse labels
-
[20] Fu, G.K., Hu, J., Wang, P.-H., Fodor, S.P.A., Counting individual DNA molecules by the stochastic attachment of diverse labels. Proc. Natl. Acad. Sci. U.S.A. 108 (2011), 9026–9031.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 9026-9031
-
-
Fu, G.K.1
Hu, J.2
Wang, P.-H.3
Fodor, S.P.A.4
-
21
-
-
84893473154
-
Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations
-
[21] Fu, G.K., Xu, W., Wilhelmy, J., Mindrinos, M.N., Davis, R.W., Xiao, W., et al. Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations. Proc. Natl. Acad. Sci. U.S.A. 111 (2014), 1891–1896.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 1891-1896
-
-
Fu, G.K.1
Xu, W.2
Wilhelmy, J.3
Mindrinos, M.N.4
Davis, R.W.5
Xiao, W.6
-
22
-
-
0030711050
-
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
-
[22] Ganot, P., Bortolin, M.L., Kiss, T., Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89 (1997), 799–809.
-
(1997)
Cell
, vol.89
, pp. 799-809
-
-
Ganot, P.1
Bortolin, M.L.2
Kiss, T.3
-
23
-
-
0018580550
-
The nucleotide sequence of human tRNAGly (anticodon GCC)
-
[23] Gupta, R.C., Roe, B.A., Randerath, K., The nucleotide sequence of human tRNAGly (anticodon GCC). Nucleic Acids Res. 7 (1979), 959–970.
-
(1979)
Nucleic Acids Res.
, vol.7
, pp. 959-970
-
-
Gupta, R.C.1
Roe, B.A.2
Randerath, K.3
-
24
-
-
0001580215
-
Nucleotide sequences in the yeast alanine transfer ribonucleic acid
-
[24] Holley, R.W., Everett, G.A., Madison, J.T., Zamir, A., Nucleotide sequences in the yeast alanine transfer ribonucleic acid. J. Biol. Chem. 240 (1965), 2122–2128.
-
(1965)
J. Biol. Chem.
, vol.240
, pp. 2122-2128
-
-
Holley, R.W.1
Everett, G.A.2
Madison, J.T.3
Zamir, A.4
-
25
-
-
84858602406
-
InterPro in 2011 new developments in the family and domain prediction database
-
[25] Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T.K., Bateman, A., et al. InterPro in 2011 new developments in the family and domain prediction database. Nucleic Acids Res. 40 (2012), D306–D312.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D306-D312
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
Bateman, A.6
-
26
-
-
0035355205
-
RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
-
[26] Hüttenhofer, A., Kiefmann, M., Meier-Ewert, S., O'Brien, J., Lehrach, H., Bachellerie, J.P., et al. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 20 (2001), 2943–2953.
-
(2001)
EMBO J.
, vol.20
, pp. 2943-2953
-
-
Hüttenhofer, A.1
Kiefmann, M.2
Meier-Ewert, S.3
O'Brien, J.4
Lehrach, H.5
Bachellerie, J.P.6
-
27
-
-
81355153985
-
RRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells
-
[27] Jack, K., Bellodi, C., Landry, D.M., Niederer, R.O., Meskauskas, A., Musalgaonkar, S., et al. RRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells. Mol. Cell 44 (2011), 660–666.
-
(2011)
Mol. Cell
, vol.44
, pp. 660-666
-
-
Jack, K.1
Bellodi, C.2
Landry, D.M.3
Niederer, R.O.4
Meskauskas, A.5
Musalgaonkar, S.6
-
28
-
-
79959284255
-
Converting nonsense codons into sense codons by targeted pseudouridylation
-
[28] Karijolich, J., Yu, Y.-T., Converting nonsense codons into sense codons by targeted pseudouridylation. Nature 474 (2011), 395–398.
-
(2011)
Nature
, vol.474
, pp. 395-398
-
-
Karijolich, J.1
Yu, Y.-T.2
-
29
-
-
54949112814
-
Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability
-
[29] Karikó, K., Muramatsu, H., Welsh, F.A., Ludwig, J., Kato, H., Akira, S., et al. Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability. Mol. Ther. 16 (2008), 1833–1840.
-
(2008)
Mol. Ther.
, vol.16
, pp. 1833-1840
-
-
Karikó, K.1
Muramatsu, H.2
Welsh, F.A.3
Ludwig, J.4
Kato, H.5
Akira, S.6
-
30
-
-
78049409724
-
Effect of pseudouridylation on the structure and activity of the catalytically essential P6.1 hairpin in human telomerase RNA
-
[30] Kim, N.-K., Theimer, C.A., Mitchell, J.R., Collins, K., Feigon, J., Effect of pseudouridylation on the structure and activity of the catalytically essential P6.1 hairpin in human telomerase RNA. Nucleic Acids Res. 38 (2010), 6746–6756.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 6746-6756
-
-
Kim, N.-K.1
Theimer, C.A.2
Mitchell, J.R.3
Collins, K.4
Feigon, J.5
-
31
-
-
0033053360
-
Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability
-
[31] Lafontaine, D.L., Tollervey, D., Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability. RNA 5 (1999), 455–467.
-
(1999)
RNA
, vol.5
, pp. 455-467
-
-
Lafontaine, D.L.1
Tollervey, D.2
-
32
-
-
84937514684
-
Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
-
[32] Li, X., Zhu, P., Ma, S., Song, J., Bai, J., Sun, F., et al. Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome. Nat. Chem. Biol. 11 (2015), 592–597.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 592-597
-
-
Li, X.1
Zhu, P.2
Ma, S.3
Song, J.4
Bai, J.5
Sun, F.6
-
33
-
-
69049089806
-
Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing
-
[33] Liang, X.-H., Liu, Q., Fournier, M.J., Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing. RNA 15 (2009), 1716–1728.
-
(2009)
RNA
, vol.15
, pp. 1716-1728
-
-
Liang, X.-H.1
Liu, Q.2
Fournier, M.J.3
-
34
-
-
84888423912
-
Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
-
[34] Liu, N., Parisien, M., Dai, Q., Zheng, G., He, C., Pan, T., Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. RNA 19 (2013), 1848–1856.
-
(2013)
RNA
, vol.19
, pp. 1848-1856
-
-
Liu, N.1
Parisien, M.2
Dai, Q.3
Zheng, G.4
He, C.5
Pan, T.6
-
35
-
-
84908626586
-
Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae
-
e110799
-
[35] Lovejoy, A.F., Riordan, D.P., Brown, P.O., Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae. PLoS One, 9, 2014, e110799.
-
(2014)
PLoS One
, vol.9
-
-
Lovejoy, A.F.1
Riordan, D.P.2
Brown, P.O.3
-
36
-
-
0037447130
-
Pseudouridylation (Psi) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism
-
[36] Ma, X., Zhao, X., Yu, Y.-T., Pseudouridylation (Psi) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism. EMBO J. 22 (2003), 1889–1897.
-
(2003)
EMBO J.
, vol.22
, pp. 1889-1897
-
-
Ma, X.1
Zhao, X.2
Yu, Y.-T.3
-
37
-
-
84875692043
-
MODOMICS: a database of RNA modification pathways – 2013 update
-
[37] Machnicka, M.A., Milanowska, K., Osman Oglou, O., Purta, E., Kurkowska, M., Olchowik, A., et al. MODOMICS: a database of RNA modification pathways – 2013 update. Nucleic Acids Res. 41 (2013), D262–D267.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D262-D267
-
-
Machnicka, M.A.1
Milanowska, K.2
Osman Oglou, O.3
Purta, E.4
Kurkowska, M.5
Olchowik, A.6
-
38
-
-
0037315641
-
Dissecting dyskeratosis
-
[38] Meier, U.T., Dissecting dyskeratosis. Nat. Genet. 33 (2003), 116–117.
-
(2003)
Nat. Genet.
, vol.33
, pp. 116-117
-
-
Meier, U.T.1
-
39
-
-
78650856912
-
Pseudouridylation goes regulatory
-
[39] Meier, U.T., Pseudouridylation goes regulatory. EMBO J. 30 (2011), 3–4.
-
(2011)
EMBO J.
, vol.30
, pp. 3-4
-
-
Meier, U.T.1
-
40
-
-
0033518188
-
A telomerase component is defective in the human disease dyskeratosis congenita
-
[40] Mitchell, J.R., Wood, E., Collins, K., A telomerase component is defective in the human disease dyskeratosis congenita. Nature 402 (1999), 551–555.
-
(1999)
Nature
, vol.402
, pp. 551-555
-
-
Mitchell, J.R.1
Wood, E.2
Collins, K.3
-
41
-
-
0036789890
-
Investigation of Overhauser effects between pseudouridine and water protons in RNA helices
-
[41] Newby, M.I., Greenbaum, N.L., Investigation of Overhauser effects between pseudouridine and water protons in RNA helices. Proc. Natl. Acad. Sci. U.S.A. 99 (2002), 12697–12702.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 12697-12702
-
-
Newby, M.I.1
Greenbaum, N.L.2
-
42
-
-
0030771087
-
Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
-
[42] Ni, J., Tien, A.L., Fournier, M.J., Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell 89 (1997), 565–573.
-
(1997)
Cell
, vol.89
, pp. 565-573
-
-
Ni, J.1
Tien, A.L.2
Fournier, M.J.3
-
43
-
-
0031581856
-
Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts
-
[43] Ofengand, J., Bakin, A., Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. J. Mol. Biol. 266 (1997), 246–268.
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 246-268
-
-
Ofengand, J.1
Bakin, A.2
-
44
-
-
84857398178
-
Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons
-
[44] Parisien, M., Yi, C., Pan, T., Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons. RNA 18 (2012), 355–367.
-
(2012)
RNA
, vol.18
, pp. 355-367
-
-
Parisien, M.1
Yi, C.2
Pan, T.3
-
45
-
-
0037428129
-
Dyskeratosis congenita and cancer in mice deficient in ribosomal RNA modification
-
[45] Ruggero, D., Grisendi, S., Piazza, F., Rego, E., Mari, F., Rao, P.H., et al. Dyskeratosis congenita and cancer in mice deficient in ribosomal RNA modification. Science 299 (2003), 259–262.
-
(2003)
Science
, vol.299
, pp. 259-262
-
-
Ruggero, D.1
Grisendi, S.2
Piazza, F.3
Rego, E.4
Mari, F.5
Rao, P.H.6
-
46
-
-
4043120552
-
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome
-
[46] Schattner, P., Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res. 32 (2004), 4281–4296.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4281-4296
-
-
Schattner, P.1
-
47
-
-
84907527348
-
Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA
-
[47] Schwartz, S., Bernstein, D.A., Mumbach, M.R., Jovanovic, M., Herbst, R.H., León-Ricardo, B.X., et al. Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Cell 159 (2014), 148–162.
-
(2014)
Cell
, vol.159
, pp. 148-162
-
-
Schwartz, S.1
Bernstein, D.A.2
Mumbach, M.R.3
Jovanovic, M.4
Herbst, R.H.5
León-Ricardo, B.X.6
-
48
-
-
84856398949
-
Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes
-
[48] Shiroguchi, K., Jia, T.Z., Sims, P.A., Xie, X.S., Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes. Proc. Natl. Acad. Sci. U.S.A. 109 (2012), 1347–1352.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 1347-1352
-
-
Shiroguchi, K.1
Jia, T.Z.2
Sims, P.A.3
Xie, X.S.4
-
49
-
-
84858385838
-
Pseudouridine synthase 1: a site-specific synthase without strict sequence recognition requirements
-
[49] Sibert, B.S., Patton, J.R., Pseudouridine synthase 1: a site-specific synthase without strict sequence recognition requirements. Nucleic Acids Res. 40 (2012), 2107–2118.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 2107-2118
-
-
Sibert, B.S.1
Patton, J.R.2
-
50
-
-
84924914622
-
Pseudouridine: still mysterious, but never a fake (uridine)!
-
[50] Spenkuch, F., Motorin, Y., Helm, M., Pseudouridine: still mysterious, but never a fake (uridine)!. RNA Biol. 11 (2015), 1540–1554.
-
(2015)
RNA Biol.
, vol.11
, pp. 1540-1554
-
-
Spenkuch, F.1
Motorin, Y.2
Helm, M.3
-
51
-
-
0019332378
-
An improved direct RNA sequence method; its application to Vicia faba 5.8S ribosomal RNA
-
[51] Tanaka, Y., Dyer, T.A., Brownlee, G.G., An improved direct RNA sequence method; its application to Vicia faba 5.8S ribosomal RNA. Nucleic Acids Res. 8 (1980), 1259–1272.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 1259-1272
-
-
Tanaka, Y.1
Dyer, T.A.2
Brownlee, G.G.3
-
52
-
-
84983755430
-
A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure of Schizosaccharomyces pombe ribosomal RNAs
-
(e115–e115)
-
[52] Taoka, M., Nobe, Y., Hori, M., Takeuchi, A., Masaki, S., Yamauchi, Y., et al. A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure of Schizosaccharomyces pombe ribosomal RNAs. Nucleic Acids Res., 43, 2015 (e115–e115).
-
(2015)
Nucleic Acids Res.
, vol.43
-
-
Taoka, M.1
Nobe, Y.2
Hori, M.3
Takeuchi, A.4
Masaki, S.5
Yamauchi, Y.6
-
53
-
-
0031442518
-
Characterization of the yeast transcriptome
-
[53] Velculescu, V.E., Zhang, L., Zhou, W., Vogelstein, J., Basrai, M.A., Bassett, D.E., et al. Characterization of the yeast transcriptome. Cell 88 (1997), 243–251.
-
(1997)
Cell
, vol.88
, pp. 243-251
-
-
Velculescu, V.E.1
Zhang, L.2
Zhou, W.3
Vogelstein, J.4
Basrai, M.A.5
Bassett, D.E.6
-
54
-
-
78650905534
-
U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP
-
[54] Wu, G., Xiao, M., Yang, C., Yu, Y.-T., U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP. EMBO J. 30 (2010), 79–89.
-
(2010)
EMBO J.
, vol.30
, pp. 79-89
-
-
Wu, G.1
Xiao, M.2
Yang, C.3
Yu, Y.-T.4
-
55
-
-
80955171917
-
Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation
-
[55] Wu, G., Yu, A.T., Kantartzis, A., Yu, Y.-T., Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation. WIREs RNA 2 (2011), 571–581.
-
(2011)
WIREs RNA
, vol.2
, pp. 571-581
-
-
Wu, G.1
Yu, A.T.2
Kantartzis, A.3
Yu, Y.-T.4
-
56
-
-
14844327762
-
Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae
-
[56] Yang, C., McPheeters, D.S., Yu, Y.-T., Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae. J. Biol. Chem. 280 (2005), 6655–6662.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 6655-6662
-
-
Yang, C.1
McPheeters, D.S.2
Yu, Y.-T.3
-
57
-
-
84953350072
-
MALAT1 long non-coding RNA in cancer
-
[57] Yoshimoto, R., Mayeda, A., Yoshida, M., Nakagawa, S., MALAT1 long non-coding RNA in cancer. Biochim. Biophys. Acta 2015 (1859), 192–199.
-
(1859)
Biochim. Biophys. Acta
, vol.2015
, pp. 192-199
-
-
Yoshimoto, R.1
Mayeda, A.2
Yoshida, M.3
Nakagawa, S.4
-
58
-
-
0032189145
-
Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing
-
[58] Yu, Y.T., Shu, M.D., Steitz, J.A., Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J. 17 (1998), 5783–5795.
-
(1998)
EMBO J.
, vol.17
, pp. 5783-5795
-
-
Yu, Y.T.1
Shu, M.D.2
Steitz, J.A.3
|