메뉴 건너뛰기




Volumn 174, Issue 1, 2014, Pages 16-21

28S rRNA is inducibly pseudouridylated by the mTOR pathway translational control in CHO cell cultures

Author keywords

CHO cells culture; Inducible pseudouridylation; MTOR pathway; SnoRNA U19; Translatome

Indexed keywords

ANTIBIOTICS; CELL CULTURE; CELL ENGINEERING; CELLS; EFFICIENCY; RNA;

EID: 84893684258     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2014.01.024     Document Type: Article
Times cited : (23)

References (36)
  • 2
    • 0038721061 scopus 로고    scopus 로고
    • A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast
    • Badis G., Fromont-Racine M., Jacquier A. A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast. RNA 2003, 9(7):771-779.
    • (2003) RNA , vol.9 , Issue.7 , pp. 771-779
    • Badis, G.1    Fromont-Racine, M.2    Jacquier, A.3
  • 3
    • 34249868208 scopus 로고    scopus 로고
    • Optimization of ribosome structure and function by rRNA base modification
    • Baxter-Roshek J.L., Petrov A.N., Dinman J.D. Optimization of ribosome structure and function by rRNA base modification. PLoS ONE 2007, 2(1):e174.
    • (2007) PLoS ONE , vol.2 , Issue.1
    • Baxter-Roshek, J.L.1    Petrov, A.N.2    Dinman, J.D.3
  • 4
    • 0031922811 scopus 로고    scopus 로고
    • Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding
    • Bortolin M.L., Kiss T. Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding. RNA 1998, 4(4):445-454.
    • (1998) RNA , vol.4 , Issue.4 , pp. 445-454
    • Bortolin, M.L.1    Kiss, T.2
  • 5
    • 78650683942 scopus 로고    scopus 로고
    • A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress
    • Chan C.T., Dyavaiah M., DeMott M.S., Taghizadeh K., Dedon P.C., Begley T.J. A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress. PLoS Genetics 2010, 6(12):e1001247.
    • (2010) PLoS Genetics , vol.6 , Issue.12
    • Chan, C.T.1    Dyavaiah, M.2    DeMott, M.S.3    Taghizadeh, K.4    Dedon, P.C.5    Begley, T.J.6
  • 6
    • 0033935223 scopus 로고    scopus 로고
    • Pseudouridine in RNA: what, where, how, and why
    • Charette M., Gray M.W. Pseudouridine in RNA: what, where, how, and why. IUBMB Life 2000, 49(5):341-351.
    • (2000) IUBMB Life , vol.49 , Issue.5 , pp. 341-351
    • Charette, M.1    Gray, M.W.2
  • 9
    • 85027908248 scopus 로고    scopus 로고
    • Understanding translational control mechanisms of the mTOR pathway in CHO cells by polysome profiling
    • (in press)
    • Courtes F.C., Vardy L., Wong N.S., Bardor M., Yap M.G., Lee D.Y. Understanding translational control mechanisms of the mTOR pathway in CHO cells by polysome profiling. New Biotechnology 2013, (in press).
    • (2013) New Biotechnology
    • Courtes, F.C.1    Vardy, L.2    Wong, N.S.3    Bardor, M.4    Yap, M.G.5    Lee, D.Y.6
  • 10
    • 79952581899 scopus 로고    scopus 로고
    • Ectopic expression of human mTOR increases viability, robustness, cell size, proliferation, and antibody production of chinese hamster ovary cells
    • Dreesen I.A., Fussenegger M. Ectopic expression of human mTOR increases viability, robustness, cell size, proliferation, and antibody production of chinese hamster ovary cells. Biotechnology and Bioengineering 2011, 108(4):853-866.
    • (2011) Biotechnology and Bioengineering , vol.108 , Issue.4 , pp. 853-866
    • Dreesen, I.A.1    Fussenegger, M.2
  • 11
    • 27544446607 scopus 로고    scopus 로고
    • Study of the mass spectrometric fragmentation of pseudouridine: comparison of fragmentation data obtained by matrix-assisted laser desorption/ionisation post-source decay, electrospray ion trap multistage mass spectrometry, and by a method utilising electrospray quadrupole time-of-flight tandem mass spectrometry and in-source fragmentation
    • Dudley E., Tuytten R., Bond A., Lemiere F., Brenton A.G., Esmans E.L., Newton R.P. Study of the mass spectrometric fragmentation of pseudouridine: comparison of fragmentation data obtained by matrix-assisted laser desorption/ionisation post-source decay, electrospray ion trap multistage mass spectrometry, and by a method utilising electrospray quadrupole time-of-flight tandem mass spectrometry and in-source fragmentation. Rapid Communications in Mass Spectrometry: RCM 2005, 19(21):3075-3085.
    • (2005) Rapid Communications in Mass Spectrometry: RCM , vol.19 , Issue.21 , pp. 3075-3085
    • Dudley, E.1    Tuytten, R.2    Bond, A.3    Lemiere, F.4    Brenton, A.G.5    Esmans, E.L.6    Newton, R.P.7
  • 12
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot P., Bortolin M.L., Kiss T. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 1997, 89(5):799-809.
    • (1997) Cell , vol.89 , Issue.5 , pp. 799-809
    • Ganot, P.1    Bortolin, M.L.2    Kiss, T.3
  • 13
    • 77954493568 scopus 로고    scopus 로고
    • SnoRNA microarray analysis reveals changes in H/ACA and C/D RNA levels caused by dyskerin ablation in mouse liver
    • Ge J., Crosby S.D., Heinz M.E., Bessler M., Mason P.J. SnoRNA microarray analysis reveals changes in H/ACA and C/D RNA levels caused by dyskerin ablation in mouse liver. Biochemical Journal 2010, 429(1):33-41.
    • (2010) Biochemical Journal , vol.429 , Issue.1 , pp. 33-41
    • Ge, J.1    Crosby, S.D.2    Heinz, M.E.3    Bessler, M.4    Mason, P.J.5
  • 14
    • 84875514519 scopus 로고    scopus 로고
    • RNA pseudouridylation: new insights into an old modification
    • Ge J., Yu Y.T. RNA pseudouridylation: new insights into an old modification. Trends in Biochemical Sciences 2013, 38(4):210-218.
    • (2013) Trends in Biochemical Sciences , vol.38 , Issue.4 , pp. 210-218
    • Ge, J.1    Yu, Y.T.2
  • 16
    • 0037292453 scopus 로고    scopus 로고
    • Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center
    • King T.H., Liu B., McCully R.R., Fournier M.J. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Molecular Cell 2003, 11(2):425-435.
    • (2003) Molecular Cell , vol.11 , Issue.2 , pp. 425-435
    • King, T.H.1    Liu, B.2    McCully, R.R.3    Fournier, M.J.4
  • 18
    • 33644875300 scopus 로고    scopus 로고
    • SnoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
    • Lestrade L., Weber M.J. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Research 2006, 34(Database issue):D158-D162.
    • (2006) Nucleic Acids Research , vol.34 , Issue.DATABASE ISSUE
    • Lestrade, L.1    Weber, M.J.2
  • 19
    • 37349128219 scopus 로고    scopus 로고
    • RRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity
    • Liang X.H., Liu Q., Fournier M.J. rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity. Molecular Cell 2007, 28(6):965-977.
    • (2007) Molecular Cell , vol.28 , Issue.6 , pp. 965-977
    • Liang, X.H.1    Liu, Q.2    Fournier, M.J.3
  • 20
    • 69049089806 scopus 로고    scopus 로고
    • Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing
    • Liang X.H., Liu Q., Fournier M.J. Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing. RNA 2009, 15(9):1716-1728.
    • (2009) RNA , vol.15 , Issue.9 , pp. 1716-1728
    • Liang, X.H.1    Liu, Q.2    Fournier, M.J.3
  • 21
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
    • Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001, 25(4):402-408.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 22
    • 67349217986 scopus 로고    scopus 로고
    • Molecular mechanisms of mTOR-mediated translational control
    • Ma X.M., Blenis J. Molecular mechanisms of mTOR-mediated translational control. Nature Reviews. Molecular Cell Biology 2009, 10(5):307-318.
    • (2009) Nature Reviews. Molecular Cell Biology , vol.10 , Issue.5 , pp. 307-318
    • Ma, X.M.1    Blenis, J.2
  • 23
    • 28044462018 scopus 로고    scopus 로고
    • Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay
    • Makarova J.A., Kramerov D.A. Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay. Gene 2005, 363:51-60.
    • (2005) Gene , vol.363 , pp. 51-60
    • Makarova, J.A.1    Kramerov, D.A.2
  • 24
    • 0029330286 scopus 로고
    • When cells stop making sense: effects of nonsense codons on RNA metabolism in vertebrate cells
    • Maquat L.E. When cells stop making sense: effects of nonsense codons on RNA metabolism in vertebrate cells. RNA 1995, 1(5):453-465.
    • (1995) RNA , vol.1 , Issue.5 , pp. 453-465
    • Maquat, L.E.1
  • 26
    • 0034657608 scopus 로고    scopus 로고
    • Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA
    • Meroueh M., Grohar P.J., Qiu J., SantaLucia J., Scaringe S.A., Chow C.S. Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA. Nucleic Acids Research 2000, 28(10):2075-2083.
    • (2000) Nucleic Acids Research , vol.28 , Issue.10 , pp. 2075-2083
    • Meroueh, M.1    Grohar, P.J.2    Qiu, J.3    SantaLucia, J.4    Scaringe, S.A.5    Chow, C.S.6
  • 27
    • 0033761629 scopus 로고    scopus 로고
    • Synthesis of the translational apparatus is regulated at the translational level
    • Meyuhas O. Synthesis of the translational apparatus is regulated at the translational level. European Journal of Biochemistry/FEBS 2000, 267(21):6321-6330.
    • (2000) European Journal of Biochemistry/FEBS , vol.267 , Issue.21 , pp. 6321-6330
    • Meyuhas, O.1
  • 28
    • 77953792493 scopus 로고    scopus 로고
    • Inhibition of human T-cell proliferation by mammalian target of rapamycin (mTOR) antagonists requires noncoding RNA growth-arrest-specific transcript 5 (GAS5)
    • Mourtada-Maarabouni M., Hasan A.M., Farzaneh F., Williams G.T. Inhibition of human T-cell proliferation by mammalian target of rapamycin (mTOR) antagonists requires noncoding RNA growth-arrest-specific transcript 5 (GAS5). Molecular Pharmacology 2010, 78(1):19-28.
    • (2010) Molecular Pharmacology , vol.78 , Issue.1 , pp. 19-28
    • Mourtada-Maarabouni, M.1    Hasan, A.M.2    Farzaneh, F.3    Williams, G.T.4
  • 29
    • 0031878107 scopus 로고    scopus 로고
    • The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family
    • Pelczar P., Filipowicz W. The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. Molecular and Cellular Biology 1998, 18(8):4509-4518.
    • (1998) Molecular and Cellular Biology , vol.18 , Issue.8 , pp. 4509-4518
    • Pelczar, P.1    Filipowicz, W.2
  • 33
    • 0031756336 scopus 로고    scopus 로고
    • Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes
    • Smith C.M., Steitz J.A. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. Molecular and Cellular Biology 1998, 18(12):6897-6909.
    • (1998) Molecular and Cellular Biology , vol.18 , Issue.12 , pp. 6897-6909
    • Smith, C.M.1    Steitz, J.A.2
  • 34
    • 79953184710 scopus 로고    scopus 로고
    • A critical role for non-coding RNA GAS5 in growth arrest and rapamycin inhibition in human T-lymphocytes
    • Williams G.T., Mourtada-Maarabouni M., Farzaneh F. A critical role for non-coding RNA GAS5 in growth arrest and rapamycin inhibition in human T-lymphocytes. Biochemical Society Transactions 2011, 39(2):482-486.
    • (2011) Biochemical Society Transactions , vol.39 , Issue.2 , pp. 482-486
    • Williams, G.T.1    Mourtada-Maarabouni, M.2    Farzaneh, F.3
  • 35
    • 78650905534 scopus 로고    scopus 로고
    • U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP
    • Wu G., Xiao M., Yang C., Yu Y.T. U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP. EMBO Journal 2011, 30(1):79-89.
    • (2011) EMBO Journal , vol.30 , Issue.1 , pp. 79-89
    • Wu, G.1    Xiao, M.2    Yang, C.3    Yu, Y.T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.