-
1
-
-
0842347403
-
U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production
-
Atzorn V, Fragapane P, Kiss T. 2004. U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production. Mol Cell Biol 24: 1769-1778.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 1769-1778
-
-
Atzorn, V.1
Fragapane, P.2
Kiss, T.3
-
2
-
-
0021822441
-
A mutation allowing an mRNA secondary structure diminishes translation of Saccharomyces cerevisiae iso-1-cytochrome c
-
Baim SB, Pietras DF, Eustice DC, Sherman F. 1985. A mutation allowing an mRNA secondary structure diminishes translation of Saccharomyces cerevisiae iso-1-cytochrome c. Mol Cell Biol 5: 1839-1846.
-
(1985)
Mol Cell Biol
, vol.5
, pp. 1839-1846
-
-
Baim, S.B.1
Pietras, D.F.2
Eustice, D.C.3
Sherman, F.4
-
3
-
-
0027438034
-
Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyl transferase center: Analysis by the application of a new sequencing technique
-
Bakin A, Ofengand J. 1993. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyl transferase center: Analysis by the application of a new sequencing technique. Biochemistry 32: 9754-9762.
-
(1993)
Biochemistry
, vol.32
, pp. 9754-9762
-
-
Bakin, A.1
Ofengand, J.2
-
4
-
-
0029093602
-
Base pairing between U3 and the preribosomal RNA is required for 18S rRNA synthesis
-
Beltrame M, Tollervey D. 1995. Base pairing between U3 and the preribosomal RNA is required for 18S rRNA synthesis. EMBO J 14: 4350-4356.
-
(1995)
EMBO J
, vol.14
, pp. 4350-4356
-
-
Beltrame, M.1
Tollervey, D.2
-
5
-
-
0017364906
-
Secondary methylation of yeast ribosomal precursor RNA
-
Brand RC, Klootwijk J, Van Steenbergen TJ, De Kok AJ, Planta RJ. 1977. Secondary methylation of yeast ribosomal precursor RNA. Eur J Biochem 75: 311-318.
-
(1977)
Eur J Biochem
, vol.75
, pp. 311-318
-
-
Brand, R.C.1
Klootwijk, J.2
Van Steenbergen, T.J.3
De Kok, A.J.4
Planta, R.J.5
-
6
-
-
0017802149
-
Biosynthesis of a hypermodified nucleotide in Saccharomyces carlsbergensis 17S and HeLa-cell 18S ribosomal ribonucleic acid
-
Brand RC, Klootwijk J, Planta RJ, Maden BE. 1978. Biosynthesis of a hypermodified nucleotide in Saccharomyces carlsbergensis 17S and HeLa-cell 18S ribosomal ribonucleic acid. Biochem J 169: 71-77.
-
(1978)
Biochem J
, vol.169
, pp. 71-77
-
-
Brand, R.C.1
Klootwijk, J.2
Planta, R.J.3
Maden, B.E.4
-
7
-
-
0037260415
-
Plant snoRNA database
-
Brown JW, Echeverria M, Qu LH, Lowe TM, Bachellerie JP, Huttenhofer A, Kastenmayer JP, Green PJ, Shaw P, Marshall DF. 2003. Plant snoRNA database. Nucleic Acids Res 31: 432-435.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 432-435
-
-
Brown, J.W.1
Echeverria, M.2
Qu, L.H.3
Lowe, T.M.4
Bachellerie, J.P.5
Huttenhofer, A.6
Kastenmayer, J.P.7
Green, P.J.8
Shaw, P.9
Marshall, D.F.10
-
8
-
-
0024424033
-
Mutations in 16S ribosomal RNA disrupt antibiotic-RNA interactions
-
De Stasio EA, Moazed D, Noller HF, Dahlberg AE. 1989. Mutations in 16S ribosomal RNA disrupt antibiotic-RNA interactions. EMBO J 8: 1213-1216.
-
(1989)
EMBO J
, vol.8
, pp. 1213-1216
-
-
De Stasio, E.A.1
Moazed, D.2
Noller, H.F.3
Dahlberg, A.E.4
-
9
-
-
0036629250
-
rRNA modifications and ribosome function
-
Decatur WA, Fournier MJ. 2002. rRNA modifications and ribosome function. Trends Biochem Sci 27: 344-351.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 344-351
-
-
Decatur, W.A.1
Fournier, M.J.2
-
10
-
-
0037428520
-
RNA-guided nucleotide modification of ribosomal and other RNAs
-
Decatur WA, Fournier MJ. 2003. RNA-guided nucleotide modification of ribosomal and other RNAs. J Biol Chem 278: 695-698.
-
(2003)
J Biol Chem
, vol.278
, pp. 695-698
-
-
Decatur, W.A.1
Fournier, M.J.2
-
11
-
-
34548751838
-
Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome
-
Decatur WA, Liang XH, Piekna-Przybylska D, Fournier MJ. 2007. Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome. Methods Enzymol 425: 283-316.
-
(2007)
Methods Enzymol
, vol.425
, pp. 283-316
-
-
Decatur, W.A.1
Liang, X.H.2
Piekna-Przybylska, D.3
Fournier, M.J.4
-
12
-
-
0031942702
-
The U14 snoRNA is required for 2′-O-methylation of the pre-18S rRNA in Xenopus oocytes
-
Dunbar DA, Baserga SJ. 1998. The U14 snoRNA is required for 2′-O-methylation of the pre-18S rRNA in Xenopus oocytes. RNA 4: 195-204.
-
(1998)
RNA
, vol.4
, pp. 195-204
-
-
Dunbar, D.A.1
Baserga, S.J.2
-
14
-
-
0025869164
-
GCD2, a translational repressor of the GCN4 gene, has a general function in the initiation of protein synthesis in Saccharomyces cerevisiae
-
Foiani M, Cigan AM, Paddon CJ, Harashima S, Hinnebusch AG. 1991. GCD2, a translational repressor of the GCN4 gene, has a general function in the initiation of protein synthesis in Saccharomyces cerevisiae. Mol Cell Biol 11: 3203-3216.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 3203-3216
-
-
Foiani, M.1
Cigan, A.M.2
Paddon, C.J.3
Harashima, S.4
Hinnebusch, A.G.5
-
15
-
-
38049178477
-
The process of mRNA-tRNA translocation
-
Frank J, Gao H, Sengupta J, Gao N, Taylor DJ. 2007. The process of mRNA-tRNA translocation. Proc Natl Acad Sci 104: 19671-19678.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 19671-19678
-
-
Frank, J.1
Gao, H.2
Sengupta, J.3
Gao, N.4
Taylor, D.J.5
-
16
-
-
0030711050
-
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
-
Ganot P, Bortolin ML, Kiss T. 1997. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89: 799-809.
-
(1997)
Cell
, vol.89
, pp. 799-809
-
-
Ganot, P.1
Bortolin, M.L.2
Kiss, T.3
-
17
-
-
53949119816
-
Precise alignment of peptidyl tRNA by the decoding center is essential for EF-Gdependent translocation
-
Garcia-Ortega L, Stephen J, Joseph S. 2008. Precise alignment of peptidyl tRNA by the decoding center is essential for EF-Gdependent translocation. Mol Cell 32: 292-299.
-
(2008)
Mol Cell
, vol.32
, pp. 292-299
-
-
Garcia-Ortega, L.1
Stephen, J.2
Joseph, S.3
-
18
-
-
27944478055
-
The putative NTPase Fap7 mediates cytoplasmic 20S pre-rRNA processing through a direct interaction with Rps14
-
Granneman S, Nandineni MR, Baserga SJ. 2005. The putative NTPase Fap7 mediates cytoplasmic 20S pre-rRNA processing through a direct interaction with Rps14. Mol Cell Biol 25: 10352-10364.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 10352-10364
-
-
Granneman, S.1
Nandineni, M.R.2
Baserga, S.J.3
-
19
-
-
0025602086
-
Identification of essential elements in U14 RNA of Saccharomyces cerevisiae
-
Jarmolowski A, Zagorski J, Li HV, Fournier MJ. 1990. Identification of essential elements in U14 RNA of Saccharomyces cerevisiae. EMBO J 9: 4503-4509.
-
(1990)
EMBO J
, vol.9
, pp. 4503-4509
-
-
Jarmolowski, A.1
Zagorski, J.2
Li, H.V.3
Fournier, M.J.4
-
20
-
-
0028936082
-
Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography
-
Keith G. 1995. Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography. Biochimie 77: 142-144.
-
(1995)
Biochimie
, vol.77
, pp. 142-144
-
-
Keith, G.1
-
21
-
-
0037292453
-
Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center
-
King TH, Liu B, McCully RR, Fournier MJ. 2003. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol Cell 11: 425-435.
-
(2003)
Mol Cell
, vol.11
, pp. 425-435
-
-
King, T.H.1
Liu, B.2
McCully, R.R.3
Fournier, M.J.4
-
22
-
-
0034637542
-
Identities and phylogenetic comparisons of posttranscriptional modifications in 16 S ribosomal RNA from Haloferax volcanii
-
Kowalak JA, Bruenger E, Crain PF, McCloskey JA. 2000. Identities and phylogenetic comparisons of posttranscriptional modifications in 16 S ribosomal RNA from Haloferax volcanii. J Biol Chem 275: 24484-24489.
-
(2000)
J Biol Chem
, vol.275
, pp. 24484-24489
-
-
Kowalak, J.A.1
Bruenger, E.2
Crain, P.F.3
McCloskey, J.A.4
-
23
-
-
33845959708
-
Involvement of helix 34 of 16 S rRNA in decoding and translocation on the ribosome
-
Kubarenko A, Sergiev P, Wintermeyer W, Dontsova O, Rodnina MV. 2006. Involvement of helix 34 of 16 S rRNA in decoding and translocation on the ribosome. J Biol Chem 281: 35235-35244.
-
(2006)
J Biol Chem
, vol.281
, pp. 35235-35244
-
-
Kubarenko, A.1
Sergiev, P.2
Wintermeyer, W.3
Dontsova, O.4
Rodnina, M.V.5
-
24
-
-
0028086499
-
The DIM1 gene responsible for the conserved m6(2)Am6(2)A dimethylation in the 3′-terminal loop of 18 S rRNA is essential in yeast
-
Lafontaine D, Delcour J, Glasser AL, Desgres J, Vandenhaute J. 1994. The DIM1 gene responsible for the conserved m6(2)Am6(2)A dimethylation in the 3′-terminal loop of 18 S rRNA is essential in yeast. J Mol Biol 241: 492-497.
-
(1994)
J Mol Biol
, vol.241
, pp. 492-497
-
-
Lafontaine, D.1
Delcour, J.2
Glasser, A.L.3
Desgres, J.4
Vandenhaute, J.5
-
25
-
-
0028866774
-
The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast
-
Lafontaine D, Vandenhaute J, Tollervey D. 1995. The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast. Genes & Dev 9: 2470-2481.
-
(1995)
Genes & Dev
, vol.9
, pp. 2470-2481
-
-
Lafontaine, D.1
Vandenhaute, J.2
Tollervey, D.3
-
26
-
-
33644875300
-
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
-
Lestrade L, Weber MJ. 2006. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res 34: D158-D162.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Lestrade, L.1
Weber, M.J.2
-
27
-
-
0025166298
-
Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae
-
Li HD, Zagorski J, Fournier MJ. 1990. Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 10: 1145-1152.
-
(1990)
Mol Cell Biol
, vol.10
, pp. 1145-1152
-
-
Li, H.D.1
Zagorski, J.2
Fournier, M.J.3
-
28
-
-
33749588453
-
The helicase Has1p is required for snoRNA release from pre-rRNA
-
Liang XH, Fournier MJ. 2006. The helicase Has1p is required for snoRNA release from pre-rRNA. Mol Cell Biol 26: 7437-7450.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 7437-7450
-
-
Liang, X.H.1
Fournier, M.J.2
-
29
-
-
17844396478
-
A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification
-
Liang XH, Uliel S, Hury A, Barth S, Doniger T, Unger R, Michaeli S. 2005. A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification. RNA 11: 619-645.
-
(2005)
RNA
, vol.11
, pp. 619-645
-
-
Liang, X.H.1
Uliel, S.2
Hury, A.3
Barth, S.4
Doniger, T.5
Unger, R.6
Michaeli, S.7
-
30
-
-
37349128219
-
rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity
-
Liang XH, Liu Q, Fournier MJ. 2007. rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity. Mol Cell 28: 965-977.
-
(2007)
Mol Cell
, vol.28
, pp. 965-977
-
-
Liang, X.H.1
Liu, Q.2
Fournier, M.J.3
-
31
-
-
0035723065
-
Mapping 2′-O-methyl groups in ribosomal RNA
-
Maden BE. 2001. Mapping 2′-O-methyl groups in ribosomal RNA. Methods 25: 374-382.
-
(2001)
Methods
, vol.25
, pp. 374-382
-
-
Maden, B.E.1
-
32
-
-
0025070318
-
Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16S rRNA
-
Moazed D, Noller HF. 1990. Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16S rRNA. J Mol Biol 211: 135-145.
-
(1990)
J Mol Biol
, vol.211
, pp. 135-145
-
-
Moazed, D.1
Noller, H.F.2
-
33
-
-
9644281575
-
Ribosomal RNA processing and ribosome biogenesis in eukaryotes
-
Nazar RN. 2004. Ribosomal RNA processing and ribosome biogenesis in eukaryotes. IUBMB Life 56: 457-465.
-
(2004)
IUBMB Life
, vol.56
, pp. 457-465
-
-
Nazar, R.N.1
-
34
-
-
0030771087
-
Small nucleolarRNAsdirect site-specific synthesis of pseudouridine in ribosomal RNA
-
Ni J, TienAL, FournierMJ. 1997.Small nucleolarRNAsdirect site-specific synthesis of pseudouridine in ribosomal RNA. Cell 89: 565-573.
-
(1997)
Cell
, vol.89
, pp. 565-573
-
-
Ni, J.1
TienAL2
FournierMJ3
-
35
-
-
33748184856
-
Biochemical characterization of the ribosomal decoding site
-
Noller HF. 2006. Biochemical characterization of the ribosomal decoding site. Biochimie 88: 935-941.
-
(2006)
Biochimie
, vol.88
, pp. 935-941
-
-
Noller, H.F.1
-
36
-
-
18844413446
-
Structural insights into translational fidelity
-
Ogle JM, Ramakrishnan V. 2005. Structural insights into translational fidelity. Annu Rev Biochem 74: 129-177.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 129-177
-
-
Ogle, J.M.1
Ramakrishnan, V.2
-
37
-
-
0035805229
-
Recognition of cognate transfer RNA by the 30S ribosomal subunit
-
Ogle JM, Brodersen DE, Clemons WM Jr, Tarry MJ, Carter AP, Ramakrishnan V. 2001. Recognition of cognate transfer RNA by the 30S ribosomal subunit. Science 292: 897-902.
-
(2001)
Science
, vol.292
, pp. 897-902
-
-
Ogle, J.M.1
Brodersen, D.E.2
Clemons Jr, W.M.3
Tarry, M.J.4
Carter, A.P.5
Ramakrishnan, V.6
-
38
-
-
0038403669
-
Insights into the decoding mechanism from recent ribosome structures
-
Ogle JM, Carter AP, Ramakrishnan V. 2003. Insights into the decoding mechanism from recent ribosome structures. Trends Biochem Sci 28: 259-266.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 259-266
-
-
Ogle, J.M.1
Carter, A.P.2
Ramakrishnan, V.3
-
39
-
-
54449100396
-
Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit
-
Piekna-Przybylska D, Przybylski P, Baudin-Baillieu A, Rousset JP, Fournier MJ. 2008. Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit. J Biol Chem 283: 26026-26036.
-
(2008)
J Biol Chem
, vol.283
, pp. 26026-26036
-
-
Piekna-Przybylska, D.1
Przybylski, P.2
Baudin-Baillieu, A.3
Rousset, J.P.4
Fournier, M.J.5
-
40
-
-
28144441826
-
The bacterial ribosome as a target for antibiotics
-
Poehlsgaard J, Douthwaite S. 2005. The bacterial ribosome as a target for antibiotics. Nat Rev Microbiol 3: 870-881.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 870-881
-
-
Poehlsgaard, J.1
Douthwaite, S.2
-
41
-
-
0033548073
-
Effect of mutations in the A site of 16S rRNA on aminoglycoside antibioticribosome interaction
-
Recht MI, Douthwaite S, Dahlquist KD, Puglisi JD. 1999. Effect of mutations in the A site of 16S rRNA on aminoglycoside antibioticribosome interaction. J Mol Biol 286: 33-43.
-
(1999)
J Mol Biol
, vol.286
, pp. 33-43
-
-
Recht, M.I.1
Douthwaite, S.2
Dahlquist, K.D.3
Puglisi, J.D.4
-
42
-
-
0027214113
-
Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site
-
Rinke-Appel J, Junke N, Brimacombe R, Dukudovskaya S, Dontsova O, Bogdanov A. 1993. Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site. Nucleic Acids Res 21: 2853-2859.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 2853-2859
-
-
Rinke-Appel, J.1
Junke, N.2
Brimacombe, R.3
Dukudovskaya, S.4
Dontsova, O.5
Bogdanov, A.6
-
43
-
-
0036703003
-
Structural dynamics of ribosomal RNA during decoding on the ribosome
-
Rodnina MV, Daviter T, Gromadski K, Wintermeyer W. 2002. Structural dynamics of ribosomal RNA during decoding on the ribosome. Biochimie 84: 745-754.
-
(2002)
Biochimie
, vol.84
, pp. 745-754
-
-
Rodnina, M.V.1
Daviter, T.2
Gromadski, K.3
Wintermeyer, W.4
-
44
-
-
38649139345
-
Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA
-
Saraiya AA, Lamichhane TN, Chow CS, SantaLucia J Jr, Cunningham PR. 2008. Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA. J Mol Biol 376: 645-657.
-
(2008)
J Mol Biol
, vol.376
, pp. 645-657
-
-
Saraiya, A.A.1
Lamichhane, T.N.2
Chow, C.S.3
SantaLucia Jr, J.4
Cunningham, P.R.5
-
45
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer M, Dunham CM, Murphy FV, Weixlbaumer A, Petry S, Kelley AC, Weir JR, Ramakrishnan V. 2006. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313: 1935-1942.
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy, F.V.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
46
-
-
0032771416
-
Base pairing between U3 small nucleolar RNA and the 5′ end of 18S rRNA is required for pre-rRNA processing
-
Sharma K, Tollervey D. 1999. Base pairing between U3 small nucleolar RNA and the 5′ end of 18S rRNA is required for pre-rRNA processing. Mol Cell Biol 19: 6012-6019.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 6012-6019
-
-
Sharma, K.1
Tollervey, D.2
-
47
-
-
43249099857
-
Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits
-
White J, Li Z, Sardana R, Bujnicki JM, Marcotte EM, Johnson AW. 2008. Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits. Mol Cell Biol 28: 3151-3161.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 3151-3161
-
-
White, J.1
Li, Z.2
Sardana, R.3
Bujnicki, J.M.4
Marcotte, E.M.5
Johnson, A.W.6
-
48
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 Å resolution
-
Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Earnest TN, Cate JH, Noller HF. 2001. Crystal structure of the ribosome at 5.5 Å resolution. Science 292: 883-896.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.6
Noller, H.F.7
|