-
1
-
-
27744496662
-
Animal testing: More than a cosmetic change
-
Abbott A. 2005. Animal testing: more than a cosmetic change. Nature 438:144-146.
-
(2005)
Nature
, vol.438
, pp. 144-146
-
-
Abbott, A.1
-
2
-
-
79952096381
-
The evolution of bioinformatics in toxicology: Advancing toxicogenomics
-
Afshari CA, Hamadeh HK, Bushel PR. 2011. The evolution of bioinformatics in toxicology: advancing toxicogenomics. Toxicol Sci 120(suppl 1):S225-S237.
-
(2011)
Toxicol Sci
, vol.120
, pp. S225-S237
-
-
Afshari, C.A.1
Hamadeh, H.K.2
Bushel, P.R.3
-
3
-
-
84874612391
-
hERG channel function: Beyond long QT
-
Babcock JJ, Li M. 2013. hERG channel function: beyond long QT. Acta Pharmacol Sin 34:329-335.
-
(2013)
Acta Pharmacol Sin
, vol.34
, pp. 329-335
-
-
Babcock, J.J.1
Li, M.2
-
4
-
-
84864994884
-
Iterative signature algorithm for the analysis of large-scale gene expression data
-
Bergmann S, Ihmels J, Barkai N. 2003. Iterative signature algorithm for the analysis of large-scale gene expression data. Phys Rev E Stat Nonlin Soft Matter Phys 67(3 pt 1):031902; doi:10.1103/ PhysRevE.67.031902.
-
(2003)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.67
, Issue.3
-
-
Bergmann, S.1
Ihmels, J.2
Barkai, N.3
-
6
-
-
0037246058
-
ArrayExpress-a public repository for microarray gene expression data at the EBI
-
Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, et al. 2003. ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 31:68-71.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 68-71
-
-
Brazma, A.1
Parkinson, H.2
Sarkans, U.3
Shojatalab, M.4
Vilo, J.5
Abeygunawardena, N.6
-
7
-
-
84891352904
-
Assessing compound carcinogenicity in vitrousing connectivity mapping
-
Caiment F, Tsamou M, Jennen D, Kleinjans J. 2014. Assessing compound carcinogenicity in vitrousing connectivity mapping. Carcinogenesis 35:201-207.
-
(2014)
Carcinogenesis
, vol.35
, pp. 201-207
-
-
Caiment, F.1
Tsamou, M.2
Jennen, D.3
Kleinjans, J.4
-
8
-
-
85050810282
-
-
R package version 3.0.0. Seattle, WA:Bioconductor. [accessed 27 January 2016]
-
Carlson M. 2015a. hgu133plus2.db: Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2). R package version 3.0.0. Seattle, WA:Bioconductor. Available: http://www. bioconductor.org/packages/3.0/data/annotation/ html/hgu133plus2.db.html [accessed 27 January 2016].
-
(2015)
Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2)
-
-
Carlson, M.1
-
9
-
-
85026940456
-
-
R package version 3.0.0. Seattle, WA:Bioconductor. [accessed 27 January 2016]
-
Carlson M. 2015b. rat2302.db: Affymetrix Rat Genome 230 2.0 Array annotation data (chip rat2302). R package version 3.0.0. Seattle, WA:Bioconductor. Available: http://www.bioconductor.org/ packages/3.0/data/annotation/html/rat2302.db.html [accessed 27 January 2016].
-
(2015)
Affymetrix Rat Genome 230 2.0 Array annotation data (chip rat2302)
-
-
Carlson, M.1
-
10
-
-
84869462906
-
A decade of toxicogenomic research and its contribution to toxicological science
-
Chen M, Zhang M, Borlak J, Tong W. 2012. A decade of toxicogenomic research and its contribution to toxicological science. Toxicol Sci 130:217-228.
-
(2012)
Toxicol Sci
, vol.130
, pp. 217-228
-
-
Chen, M.1
Zhang, M.2
Borlak, J.3
Tong, W.4
-
11
-
-
84891753483
-
The Reactome pathway knowledgebase
-
Croft D, Mundo AF, Haw R, Milacic M, Weiser J, Wu G, et al. 2014. The Reactome pathway knowledgebase. Nucleic Acids Res 42(Database issue):D472-D477.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D472-D477
-
-
Croft, D.1
Mundo, A.F.2
Haw, R.3
Milacic, M.4
Weiser, J.5
Wu, G.6
-
12
-
-
77952862068
-
Modular analysis of gene expression data with R
-
Csárdi G, Kutalik Z, Bergmann S. 2010. Modular analysis of gene expression data with R. Bioinformatics 26:1376-1377.
-
(2010)
Bioinformatics
, vol.26
, pp. 1376-1377
-
-
Csárdi, G.1
Kutalik, Z.2
Bergmann, S.3
-
13
-
-
84871257721
-
Comparison of genotoxicant-modified transcriptomic responses in conventional and epigenetically stabilized primary rat hepatocytes with in vivorat liver data
-
Doktorova TY, Ellinger-Ziegelbauer H, Vinken M, Vanhaecke T, van Delft J, Kleinjans J, et al. 2012. Comparison of genotoxicant-modified transcriptomic responses in conventional and epigenetically stabilized primary rat hepatocytes with in vivorat liver data. Arch Toxicol 86:1703-1715.
-
(2012)
Arch Toxicol
, vol.86
, pp. 1703-1715
-
-
Doktorova, T.Y.1
Ellinger-Ziegelbauer, H.2
Vinken, M.3
Vanhaecke, T.4
van Delft, J.5
Kleinjans, J.6
-
14
-
-
84878968809
-
Transcriptomic responses generated by hepatocarcinogens in a battery of liver-based in vitro models
-
Doktorova TY, Yildirimman R, Vinken M, Vilardell M, Vanhaecke T, Gmuender H, et al. 2013. Transcriptomic responses generated by hepatocarcinogens in a battery of liver-based in vitro models. Carcinogenesis 34:1393-1402.
-
(2013)
Carcinogenesis
, vol.34
, pp. 1393-1402
-
-
Doktorova, T.Y.1
Yildirimman, R.2
Vinken, M.3
Vilardell, M.4
Vanhaecke, T.5
Gmuender, H.6
-
15
-
-
37149025669
-
Prediction of a carcinogenic potential of rat hepatocarcinogens using toxicogenomics analysis of short-term in vivostudies
-
Ellinger-Ziegelbauer H, Gmuender H, Bandenburg A, Ahr HJ. 2008. Prediction of a carcinogenic potential of rat hepatocarcinogens using toxicogenomics analysis of short-term in vivostudies. Mutat Res 637:23-39.
-
(2008)
Mutat Res
, vol.637
, pp. 23-39
-
-
Ellinger-Ziegelbauer, H.1
Gmuender, H.2
Bandenburg, A.3
Ahr, H.J.4
-
16
-
-
0242551230
-
Significance of elevated cobalamin (vitamin B12) levels in blood
-
Ermens AA, Vlasveld LT, Lindemans J. 2003. Significance of elevated cobalamin (vitamin B12) levels in blood. Clin Biochem 36:585-590.
-
(2003)
Clin Biochem
, vol.36
, pp. 585-590
-
-
Ermens, A.A.1
Vlasveld, L.T.2
Lindemans, J.3
-
17
-
-
84905023794
-
Drugs to be avoided in patients with long QT syndrome: Focus on the anaesthesiological management
-
Fazio G, Vernuccio F, Grutta G, Re GL. 2013. Drugs to be avoided in patients with long QT syndrome: focus on the anaesthesiological management. World J Cardiol 5:87-93.
-
(2013)
World J Cardiol
, vol.5
, pp. 87-93
-
-
Fazio, G.1
Vernuccio, F.2
Grutta, G.3
Re, G.L.4
-
19
-
-
18544387899
-
Reproducible research: A bioinformatics case study
-
Article2
-
Gentleman R. 2005. Reproducible research: a bioinformatics case study. Stat Appl Genet Mol Biol 4:Article2; doi:10.2202/1544-6115.1034.
-
(2005)
Stat Appl Genet Mol Biol
, vol.4
-
-
Gentleman, R.1
-
20
-
-
1642282158
-
First dose of potential new medicines to humans: How animals help
-
Greaves P, Williams A, Eve M. 2004. First dose of potential new medicines to humans: how animals help. Nat Rev Drug Discov 3:226-236.
-
(2004)
Nat Rev Drug Discov
, vol.3
, pp. 226-236
-
-
Greaves, P.1
Williams, A.2
Eve, M.3
-
21
-
-
84912573844
-
Toxicogenomics directory of chemically exposed human hepatocytes
-
Grinberg M, Stöber RM, Edlund K, Rempel E, Godoy P, Reif R, et al. 2014. Toxicogenomics directory of chemically exposed human hepatocytes. Arch Toxicol 88:2261-2287.
-
(2014)
Arch Toxicol
, vol.88
, pp. 2261-2287
-
-
Grinberg, M.1
Stöber, R.M.2
Edlund, K.3
Rempel, E.4
Godoy, P.5
Reif, R.6
-
22
-
-
43849112590
-
Metabolic liver disease in children
-
Hansen K, Horslen S. 2008. Metabolic liver disease in children. Liver Transpl 14:713-733.
-
(2008)
Liver Transpl
, vol.14
, pp. 713-733
-
-
Hansen, K.1
Horslen, S.2
-
23
-
-
84894344424
-
Evaluation of database-derived pathway development for enabling biomarker discovery for hepatotoxicity
-
Hebels DG, Jetten MJ, Aerts HJ, Herwig R, Theunissen DH, Gaj S, et al. 2014. Evaluation of database-derived pathway development for enabling biomarker discovery for hepatotoxicity. Biomark Med 8:185-200.
-
(2014)
Biomark Med
, vol.8
, pp. 185-200
-
-
Hebels, D.G.1
Jetten, M.J.2
Aerts, H.J.3
Herwig, R.4
Theunissen, D.H.5
Gaj, S.6
-
24
-
-
67649211924
-
Gene expression profiling in rat liver treated with various hepatotoxic-compounds inducing coagulopathy
-
Hirode M, Omura K, Kiyosawa N, Uehara T, Shimuzu T, Ono A, et al. 2008a. Gene expression profiling in rat liver treated with various hepatotoxic-compounds inducing coagulopathy. J Toxicol Sci 34:281-293.
-
(2008)
J Toxicol Sci
, vol.34
, pp. 281-293
-
-
Hirode, M.1
Omura, K.2
Kiyosawa, N.3
Uehara, T.4
Shimuzu, T.5
Ono, A.6
-
25
-
-
44349141288
-
Gene expression profiling in rat liver treated with compounds inducing phospholipidosis
-
Hirode M, Ono A, Miyagishima T, Nagao T, Ohno Y, Urushidani T. 2008b. Gene expression profiling in rat liver treated with compounds inducing phospholipidosis. Toxicol Appl Pharmacol 229:290-299.
-
(2008)
Toxicol Appl Pharmacol
, vol.229
, pp. 290-299
-
-
Hirode, M.1
Ono, A.2
Miyagishima, T.3
Nagao, T.4
Ohno, Y.5
Urushidani, T.6
-
26
-
-
77955134859
-
Genomic indicators in the blood predict drug-induced liver injury
-
Huang J, Shi W, Zhang J, Chou JW, Paules RS, Gerrish K, et al. 2010. Genomic indicators in the blood predict drug-induced liver injury. Pharmacogenomics J 10:267-277.
-
(2010)
Pharmacogenomics J
, vol.10
, pp. 267-277
-
-
Huang, J.1
Shi, W.2
Zhang, J.3
Chou, J.W.4
Paules, R.S.5
Gerrish, K.6
-
27
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, et al. 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
-
28
-
-
84884200376
-
Characterization of druginduced transcriptional modules: Towards drug repositioning and functional understanding
-
Iskar M, Zeller G, Blattmann P, Campillos M, Kuhn M, Kaminska KH, et al. 2013. Characterization of druginduced transcriptional modules: towards drug repositioning and functional understanding. Mol Syst Biol 9:662; doi:10.1038/msb.2013.20.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 662
-
-
Iskar, M.1
Zeller, G.2
Blattmann, P.3
Campillos, M.4
Kuhn, M.5
Kaminska, K.H.6
-
29
-
-
11144355440
-
Applications of microarrays with toxicologically relevant genes (tox genes) for the evaluation of chemical toxicants in Sprague Dawley rats in vivo and human hepatocytes in vitro
-
Kier LD, Neft R, Tang L, Suizu R, Cook T, Onsurez K, et al. 2004. Applications of microarrays with toxicologically relevant genes (tox genes) for the evaluation of chemical toxicants in Sprague Dawley rats in vivo and human hepatocytes in vitro. Mutat Res 549:101-113.
-
(2004)
Mutat Res
, vol.549
, pp. 101-113
-
-
Kier, L.D.1
Neft, R.2
Tang, L.3
Suizu, R.4
Cook, T.5
Onsurez, K.6
-
30
-
-
4344645978
-
Can the pharmaceutical industry reduce attrition rates?
-
Kola I, Landis J. 2004. Can the pharmaceutical industry reduce attrition rates? Nat Rev Drug Discov 3:711-715.
-
(2004)
Nat Rev Drug Discov
, vol.3
, pp. 711-715
-
-
Kola, I.1
Landis, J.2
-
31
-
-
3042517028
-
Rodent carcinogenicity of peroxisome proliferators and issues on human relevance
-
Lai DY. 2004. Rodent carcinogenicity of peroxisome proliferators and issues on human relevance. J Environ Sci Health C Environ Carcinog Ecotoxicol Rev 22:37-55.
-
(2004)
J Environ Sci Health C Environ Carcinog Ecotoxicol Rev
, vol.22
, pp. 37-55
-
-
Lai, D.Y.1
-
32
-
-
33749335282
-
The Connectivity Map: Using gene-expression signatures to connect small molecules, genes, and disease
-
Lamb J, Crawford ED, Peck D, Modell JW, Blat IC, Wrobel MJ, et al. 2006. The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science 313:1929-1935.
-
(2006)
Science
, vol.313
, pp. 1929-1935
-
-
Lamb, J.1
Crawford, E.D.2
Peck, D.3
Modell, J.W.4
Blat, I.C.5
Wrobel, M.J.6
-
33
-
-
84893876134
-
Lack of liver injury in Wistar rats treated with the combination of isoniazid and rifampicin
-
Metushi IG, Uetrecht J. 2014. Lack of liver injury in Wistar rats treated with the combination of isoniazid and rifampicin. Mol Cell Biochem 387:9-17.
-
(2014)
Mol Cell Biochem
, vol.387
, pp. 9-17
-
-
Metushi, I.G.1
Uetrecht, J.2
-
34
-
-
84896398914
-
Notch signaling and new therapeutic options in liver disease
-
Morell CM, Strazzabosco M. 2014. Notch signaling and new therapeutic options in liver disease. J Hepatol 60:885-890.
-
(2014)
J Hepatol
, vol.60
, pp. 885-890
-
-
Morell, C.M.1
Strazzabosco, M.2
-
35
-
-
41149111051
-
The liver pharmacological and xenobiotic gene response repertoire
-
Natsoulis G, Pearson CI, Gollub J, Eynon BP, Ferng J, Nair R, et al. 2008. The liver pharmacological and xenobiotic gene response repertoire. Mol Syst Biol 4:175; doi:10.1038/msb.2008.9.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 175
-
-
Natsoulis, G.1
Pearson, C.I.2
Gollub, J.3
Eynon, B.P.4
Ferng, J.5
Nair, R.6
-
36
-
-
0032901303
-
Microarrays and toxicology: The advent of toxicogenomics
-
Nuwaysir EF, Bittner M, Trent J, Barrett JC, Afshari CA. 1999. Microarrays and toxicology: the advent of toxicogenomics. Mol Carcinog 24:153-159.
-
(1999)
Mol Carcinog
, vol.24
, pp. 153-159
-
-
Nuwaysir, E.F.1
Bittner, M.2
Trent, J.3
Barrett, J.C.4
Afshari, C.A.5
-
37
-
-
84914179053
-
-
Vienna, Austria:R Foundation for Statistical Computing. [accessed 27 January 2016]
-
R Core Team. 2013. R: A Language and Environment for Statistical Computing. Vienna, Austria:R Foundation for Statistical Computing. Available: http://www.Rproject.org [accessed 27 January 2016].
-
(2013)
R: A Language and Environment for Statistical Computing
-
-
-
38
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. 2005. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 102:15545-15550.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
-
39
-
-
79953727844
-
EU Framework 6 Project: Predictive Toxicology (PredTox)-overview and outcome
-
Suter L, Schroeder S, Meyer K, Gautier JC, Amberg A, Wendt M, et al. 2011. EU Framework 6 Project: Predictive Toxicology (PredTox)-overview and outcome. Toxicol Appl Pharmacol 252:73-84.
-
(2011)
Toxicol Appl Pharmacol
, vol.252
, pp. 73-84
-
-
Suter, L.1
Schroeder, S.2
Meyer, K.3
Gautier, J.C.4
Amberg, A.5
Wendt, M.6
-
40
-
-
80052356895
-
Prediction model of potential hepatocarcinogenicity of rat hepatocarcinogens using a large-scale toxicogenomics database
-
Uehara T, Minowa Y, Morikawa Y, Kondo C, Maruyama T, Kato I, et al. 2011. Prediction model of potential hepatocarcinogenicity of rat hepatocarcinogens using a large-scale toxicogenomics database. Toxicol Appl Pharmacol 255:297-306.
-
(2011)
Toxicol Appl Pharmacol
, vol.255
, pp. 297-306
-
-
Uehara, T.1
Minowa, Y.2
Morikawa, Y.3
Kondo, C.4
Maruyama, T.5
Kato, I.6
-
41
-
-
76749102991
-
The Japanese toxicogenomics project: Application of toxicogenomics
-
Uehara T, Ono A, Maruyama T, Kato I, Yamada H, Ohno Y, et al. 2010. The Japanese toxicogenomics project: application of toxicogenomics. Mol Nutr Food Res 54:218-227.
-
(2010)
Mol Nutr Food Res
, vol.54
, pp. 218-227
-
-
Uehara, T.1
Ono, A.2
Maruyama, T.3
Kato, I.4
Yamada, H.5
Ohno, Y.6
-
42
-
-
84884704142
-
Toxicogenomics discrimination of potential hepato carcinogenicity of nongenotoxic compounds in rat liver
-
Yamada F, Sumida K, Uehara T, Morikawa Y, Yamada H, Urushidani T, et al. 2013. Toxicogenomics discrimination of potential hepato carcinogenicity of nongenotoxic compounds in rat liver. J Appl Toxicol 33:1284-1293.
-
(2013)
J Appl Toxicol
, vol.33
, pp. 1284-1293
-
-
Yamada, F.1
Sumida, K.2
Uehara, T.3
Morikawa, Y.4
Yamada, H.5
Urushidani, T.6
-
43
-
-
84901247883
-
Data mining reveals a network of early-response genes as a consensus signature of drug-induced in vitro and in vivotoxicity
-
Zhang JD, Berntenis N, Roth A, Ebeling M. 2014. Data mining reveals a network of early-response genes as a consensus signature of drug-induced in vitro and in vivotoxicity. Pharmacogenomics J 14:208-216.
-
(2014)
Pharmacogenomics J
, vol.14
, pp. 208-216
-
-
Zhang, J.D.1
Berntenis, N.2
Roth, A.3
Ebeling, M.4
|