-
1
-
-
81455161623
-
Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection
-
Ahmad R, Parfitt DE, Fass J, Ogundiwin E, Dhingra A, Gradziel TM, Lin D, Joshi NA, Martinez-Garcia PJ, Crisosto CH (2011) Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection. BMC Genomics 12: 569
-
(2011)
BMC Genomics
, vol.12
, pp. 569
-
-
Ahmad, R.1
Parfitt, D.E.2
Fass, J.3
Ogundiwin, E.4
Dhingra, A.5
Gradziel, T.M.6
Lin, D.7
Joshi, N.A.8
Martinez-Garcia, P.J.9
Crisosto, C.H.10
-
2
-
-
77953492924
-
Arabidopsis thaliana pattern recognition receptors for bacterial elongation factor Tu and flagellin can be combined to form functional chimeric receptors
-
Albert M, Jehle AK, Mueller K, Eisele C, Lipschis M, Felix G (2010) Arabidopsis thaliana pattern recognition receptors for bacterial elongation factor Tu and flagellin can be combined to form functional chimeric receptors. J Biol Chem 285: 19035-19042
-
(2010)
J Biol Chem
, vol.285
, pp. 19035-19042
-
-
Albert, M.1
Jehle, A.K.2
Mueller, K.3
Eisele, C.4
Lipschis, M.5
Felix, G.6
-
3
-
-
79958165589
-
De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)
-
Al-Dous EK, George B, Al-Mahmoud ME, Al-Jaber MY, Wang H, Salameh YM, Al-Azwani EK, Chaluvadi S, Pontaroli AC, DeBarry J, et al (2011) De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nat Biotechnol 29: 521-527
-
(2011)
Nat Biotechnol
, vol.29
, pp. 521-527
-
-
Al-Dous, E.K.1
George, B.2
Al-Mahmoud, M.E.3
Al-Jaber, M.Y.4
Wang, H.5
Salameh, Y.M.6
Al-Azwani, E.K.7
Chaluvadi, S.8
Pontaroli, A.C.9
Debarry, J.10
-
4
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
5
-
-
79251632958
-
The genome of Theobroma cacao
-
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, et al (2011) The genome of Theobroma cacao. Nat Genet 43: 101-108
-
(2011)
Nat Genet
, vol.43
, pp. 101-108
-
-
Argout, X.1
Salse, J.2
Aury, J.M.3
Guiltinan, M.J.4
Droc, G.5
Gouzy, J.6
Allegre, M.7
Chaparro, C.8
Legavre, T.9
Maximova, S.N.10
-
6
-
-
84907190014
-
Genome-wide identification and expression analysis of NBS-encoding genes in Malus 3 domestica and expansion of NBS genes family in Rosaceae
-
Arya P, Kumar G, Acharya V, Singh AK (2014) Genome-wide identification and expression analysis of NBS-encoding genes in Malus 3 domestica and expansion of NBS genes family in Rosaceae. PLoS ONE 9: e107987
-
(2014)
Plos ONE
, vol.9
-
-
Arya, P.1
Kumar, G.2
Acharya, V.3
Singh, A.K.4
-
7
-
-
79956309501
-
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
-
Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, et al (2011) The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332: 960-963
-
(2011)
Science
, vol.332
, pp. 960-963
-
-
Banks, J.A.1
Nishiyama, T.2
Hasebe, M.3
Bowman, J.L.4
Gribskov, M.5
Depamphilis, C.6
Albert, V.A.7
Aono, N.8
Aoyama, T.9
Ambrose, B.A.10
-
8
-
-
77949523463
-
Paleopolyploidy in the Brassicales: Analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales
-
Barker MS, Vogel H, Schranz ME (2009) Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales. Genome Biol Evol 1: 391-399
-
(2009)
Genome Biol Evol
, vol.1
, pp. 391-399
-
-
Barker, M.S.1
Vogel, H.2
Schranz, M.E.3
-
9
-
-
0037468758
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
-
Bowers JE, Chapman BA, Rong J, Paterson AH (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438
-
(2003)
Nature
, vol.422
, pp. 433-438
-
-
Bowers, J.E.1
Chapman, B.A.2
Rong, J.3
Paterson, A.H.4
-
10
-
-
84922339729
-
Multiple polyploidy events in the early radiation of nodulating and non-nodulating legumes
-
Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN, Rolf M, et al (2015) Multiple polyploidy events in the early radiation of nodulating and non-nodulating legumes. Mol Biol Evol 32: 193-210
-
(2015)
Mol Biol Evol
, vol.32
, pp. 193-210
-
-
Cannon, S.B.1
McKain, M.R.2
Harkess, A.3
Nelson, M.N.4
Dash, S.5
Deyholos, M.K.6
Peng, Y.7
Joyce, B.8
Stewart, C.N.9
Rolf, M.10
-
11
-
-
67650757433
-
TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
-
Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972-1973
-
(2009)
Bioinformatics
, vol.25
, pp. 1972-1973
-
-
Capella-Gutiérrez, S.1
Silla-Martínez, J.M.2
Gabaldón, T.3
-
12
-
-
36849029862
-
Signalling through kinase-defective domains: The prevalence of atypical receptor-like kinases in plants
-
Castells E, Casacuberta JM (2007) Signalling through kinase-defective domains: the prevalence of atypical receptor-like kinases in plants. J Exp Bot 58: 3503-3511
-
(2007)
J Exp Bot
, vol.58
, pp. 3503-3511
-
-
Castells, E.1
Casacuberta, J.M.2
-
13
-
-
77951635682
-
Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (rosids) derive from the same paleo-hexaploid ancestral genome
-
Cenci A, Combes MC, Lashermes P (2010) Comparative sequence analyses indicate that Coffea (asterids) and Vitis (rosids) derive from the same paleo-hexaploid ancestral genome. Mol Genet Genomics 283: 493-501
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 493-501
-
-
Cenci, A.1
Combes, M.C.2
Lashermes, P.3
-
14
-
-
77956656511
-
Draft genome sequence of the oilseed species Ricinus communis
-
Chan AP, Crabtree J, Zhao Q, Lorenzi H, Orvis J, Puiu D, Melake-Berhan A, Jones KM, Redman J, Chen G, et al (2010) Draft genome sequence of the oilseed species Ricinus communis. Nat Biotechnol 28: 951-956
-
(2010)
Nat Biotechnol
, vol.28
, pp. 951-956
-
-
Chan, A.P.1
Crabtree, J.2
Zhao, Q.3
Lorenzi, H.4
Orvis, J.5
Puiu, D.6
Melake-Berhan, A.7
Jones, K.M.8
Redman, J.9
Chen, G.10
-
15
-
-
21144455090
-
STRUBBELIG defines a receptor kinase-mediated signaling pathway regulating organ development in Arabidopsis
-
Chevalier D, Batoux M, Fulton L, Pfister K, Yadav RK, Schellenberg M, Schneitz K (2005) STRUBBELIG defines a receptor kinase-mediated signaling pathway regulating organ development in Arabidopsis. Proc Natl Acad Sci USA 102: 9074-9079
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9074-9079
-
-
Chevalier, D.1
Batoux, M.2
Fulton, L.3
Pfister, K.4
Yadav, R.K.5
Schellenberg, M.6
Schneitz, K.7
-
16
-
-
80052272774
-
The genome of the extremophile crucifer Thellungiella parvula
-
Dassanayake M, Oh DH, Haas JS, Hernandez A, Hong H, Ali S, Yun DJ, Bressan RA, Zhu JK, Bohnert HJ, et al (2011) The genome of the extremophile crucifer Thellungiella parvula. Nat Genet 43: 913-918
-
(2011)
Nat Genet
, vol.43
, pp. 913-918
-
-
Dassanayake, M.1
Oh, D.H.2
Haas, J.S.3
Hernandez, A.4
Hong, H.5
Ali, S.6
Yun, D.J.7
Bressan, R.A.8
Zhu, J.K.9
Bohnert, H.J.10
-
17
-
-
84859499806
-
EggLib: Processing, analysis and simulation tools for population genetics and genomics
-
De Mita S, Siol M (2012) EggLib: processing, analysis and simulation tools for population genetics and genomics. BMC Genet 13: 27
-
(2012)
BMC Genet
, vol.13
, pp. 27
-
-
De Mita, S.1
Siol, M.2
-
19
-
-
84874229463
-
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
-
De Smet R, Adams KL, Vandepoele K, Van Montagu MCE, Maere S, Van de Peer Y (2013) Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants. Proc Natl Acad Sci USA 110: 2898-2903
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 2898-2903
-
-
De Smet, R.1
Adams, K.L.2
Vandepoele, K.3
Van Montagu, M.4
Maere, S.5
Van De Peer, Y.6
-
20
-
-
43349096191
-
Getting a tree fast: Neighbor joining, Fast ME, and distance-based methods
-
Desper R, Gascuel O (2006) Getting a tree fast: neighbor joining, Fast ME, and distance-based methods. Curr Protoc Bioinformatics Chapter 6: 6.3.1-6.3.28
-
(2006)
Curr Protoc Bioinformatics Chapter
, vol.6
-
-
Desper, R.1
Gascuel, O.2
-
21
-
-
84864696893
-
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
-
D’Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, et al (2012) The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488: 213-217
-
(2012)
Nature
, vol.488
, pp. 213-217
-
-
D’Hont, A.1
Denoeud, F.2
Aury, J.M.3
Baurens, F.C.4
Carreel, F.5
Garsmeur, O.6
Noel, B.7
Bocs, S.8
Droc, G.9
Rouard, M.10
-
22
-
-
84856368301
-
Leucine-rich repeat receptor kinases are sporadically distributed in eukaryotic genomes
-
Diévart A, Gilbert N, Droc G, Attard A, Gourgues M, Guiderdoni E, Périn C (2011) Leucine-rich repeat receptor kinases are sporadically distributed in eukaryotic genomes. BMC Evol Biol 11: 367
-
(2011)
BMC Evol Biol
, vol.11
, pp. 367
-
-
Diévart, A.1
Gilbert, N.2
Droc, G.3
Attard, A.4
Gourgues, M.5
Guiderdoni, E.6
Périn, C.7
-
23
-
-
77954763024
-
Plant immunity: Towards an integrated view of plant-pathogen interactions
-
Dodds PN, Rathjen JP (2010) Plant immunity: towards an integrated view of plant-pathogen interactions. Nat Rev Genet 11: 539-548
-
(2010)
Nat Rev Genet
, vol.11
, pp. 539-548
-
-
Dodds, P.N.1
Rathjen, J.P.2
-
24
-
-
84922481163
-
Genome-wide analysis of the WRKY gene family in cotton
-
Dou L, Zhang X, Pang C, Song M, Wei H, Fan S, Yu S (2014) Genome-wide analysis of the WRKY gene family in cotton. Mol Genet Genomics 289: 1103-1121
-
(2014)
Mol Genet Genomics
, vol.289
, pp. 1103-1121
-
-
Dou, L.1
Zhang, X.2
Pang, C.3
Song, M.4
Wei, H.5
Fan, S.6
Yu, S.7
-
25
-
-
20744436518
-
Tree pattern matching in phylogenetic trees: Automatic search for orthologs or paralogs in homologous gene sequence databases
-
Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G (2005) Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinformatics 21: 2596-2603
-
(2005)
Bioinformatics
, vol.21
, pp. 2596-2603
-
-
Dufayard, J.F.1
Duret, L.2
Penel, S.3
Gouy, M.4
Rechenmann, F.5
Perrière, G.6
-
26
-
-
84863606023
-
Efficient selection of branch-specific models of sequence evolution
-
Dutheil JY, Galtier N, Romiguier J, Douzery EJ, Ranwez V, Boussau B (2012) Efficient selection of branch-specific models of sequence evolution. Mol Biol Evol 29: 1861-1874
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1861-1874
-
-
Dutheil, J.Y.1
Galtier, N.2
Romiguier, J.3
Douzery, E.J.4
Ranwez, V.5
Boussau, B.6
-
27
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy SR (2009) A new generation of homology search tools based on probabilistic inference. Genome Inform 23: 205-211
-
(2009)
Genome Inform
, vol.23
, pp. 205-211
-
-
Eddy, S.R.1
-
28
-
-
1042291215
-
Structural principles of leucine-rich repeat (LRR) proteins
-
Enkhbayar P, Kamiya M, Osaki M, Matsumoto T, Matsushima N (2004) Structural principles of leucine-rich repeat (LRR) proteins. Proteins Struct Funct Bioinf 54: 394-403
-
(2004)
Proteins Struct Funct Bioinf
, vol.54
, pp. 394-403
-
-
Enkhbayar, P.1
Kamiya, M.2
Osaki, M.3
Matsumoto, T.4
Matsushima, N.5
-
29
-
-
65249143921
-
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
-
Fawcett JA, Maere S, Van de Peer Y (2009) Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci USA 106: 5737-5742
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5737-5742
-
-
Fawcett, J.A.1
Maere, S.2
Van De Peer, Y.3
-
31
-
-
84902076502
-
Impact of recurrent gene duplication on adaptation of plant genomes
-
Fischer I, Dainat J, Ranwez V, Glémin S, Dufayard JF, Chantret N (2014) Impact of recurrent gene duplication on adaptation of plant genomes. BMC Plant Biol 14: 151
-
(2014)
BMC Plant Biol
, vol.14
, pp. 151
-
-
Fischer, I.1
Dainat, J.2
Ranwez, V.3
Glémin, S.4
Dufayard, J.F.5
Chantret, N.6
-
32
-
-
77957233773
-
The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection
-
Fletcher W, Yang Z (2010) The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection. Mol Biol Evol 27: 2257-2267
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2257-2267
-
-
Fletcher, W.1
Yang, Z.2
-
33
-
-
84863888434
-
The genome of melon (Cucumis melo L.)
-
Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, González VM, Hénaff E, Câmara F, Cozzuto L, Lowy E, et al (2012) The genome of melon (Cucumis melo L.). Proc Natl Acad Sci USA 109: 11872-11877
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 11872-11877
-
-
Garcia-Mas, J.1
Benjak, A.2
Sanseverino, W.3
Bourgeois, M.4
Mir, G.5
González, V.M.6
Hénaff, E.7
Câmara, F.8
Cozzuto, L.9
Lowy, E.10
-
34
-
-
79953254419
-
The RLK/Pelle family of kinases
-
Gish LA, Clark SE (2011) The RLK/Pelle family of kinases. Plant J 66: 117-127
-
(2011)
Plant J
, vol.66
, pp. 117-127
-
-
Gish, L.A.1
Clark, S.E.2
-
35
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of Phy ML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of Phy ML 3.0. Syst Biol 59: 307-321
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
36
-
-
66049128566
-
Distinguishing among evolutionary models for the maintenance of gene duplicates
-
Hahn MW (2009) Distinguishing among evolutionary models for the maintenance of gene duplicates. J Hered 100: 605-617
-
(2009)
J Hered
, vol.100
, pp. 605-617
-
-
Hahn, M.W.1
-
37
-
-
84888258833
-
Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3
-
Han MV, Thomas GWC, Lugo-Martinez J, Hahn MW (2013) Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3. Mol Biol Evol 30: 1987-1997
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1987-1997
-
-
Han, M.V.1
Thomas, G.2
Lugo-Martinez, J.3
Hahn, M.W.4
-
38
-
-
57749085421
-
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
-
Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH (2008) Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol 148: 993-1003
-
(2008)
Plant Physiol
, vol.148
, pp. 993-1003
-
-
Hanada, K.1
Zou, C.2
Lehti-Shiu, M.D.3
Shinozaki, K.4
Shiu, S.H.5
-
39
-
-
80053624132
-
An Arabidopsis (Malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease
-
Hok S, Danchin EGJ, Allasia V, Panabières F, Attard A, Keller H (2011) An Arabidopsis (malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease. Plant Cell Environ 34: 1944-1957
-
(2011)
Plant Cell Environ
, vol.34
, pp. 1944-1957
-
-
Hok, S.1
Danchin, E.2
Allasia, V.3
Panabières, F.4
Attard, A.5
Keller, H.6
-
40
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, et al (2011) The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet 43: 476-481
-
(2011)
Nat Genet
, vol.43
, pp. 476-481
-
-
Hu, T.T.1
Pattyn, P.2
Bakker, E.G.3
Cao, J.4
Cheng, J.F.5
Clark, R.M.6
Fahlgren, N.7
Fawcett, J.A.8
Grimwood, J.9
Gundlach, H.10
-
41
-
-
70649085835
-
The genome of the cucumber, Cucumis sativus L
-
Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, Lucas WJ, Wang X, Xie B, Ni P, et al (2009) The genome of the cucumber, Cucumis sativus L. Nat Genet 41: 1275-1281
-
(2009)
Nat Genet
, vol.41
, pp. 1275-1281
-
-
Huang, S.1
Li, R.2
Zhang, Z.3
Li, L.4
Gu, X.5
Fan, W.6
Lucas, W.J.7
Wang, X.8
Xie, B.9
Ni, P.10
-
42
-
-
70349997549
-
Population genetic models of duplicated genes
-
Innan H (2009) Population genetic models of duplicated genes. Genetica 137: 19-37
-
(2009)
Genetica
, vol.137
, pp. 19-37
-
-
Innan, H.1
-
43
-
-
75549087305
-
The evolution of gene duplications: Classifying and distinguishing between models
-
Innan H, Kondrashov F (2010) The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet 11: 97-108
-
(2010)
Nat Rev Genet
, vol.11
, pp. 97-108
-
-
Innan, H.1
Kondrashov, F.2
-
44
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
45
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, et al (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449: 463-467
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
Choisne, N.7
Aubourg, S.8
Vitulo, N.9
Jubin, C.10
-
46
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu Y, Liang H, Soltis PS, et al (2011) Ancestral polyploidy in seed plants and angiosperms. Nature 473: 97-100
-
(2011)
Nature
, vol.473
, pp. 97-100
-
-
Jiao, Y.1
Wickett, N.J.2
Ayyampalayam, S.3
Chanderbali, A.S.4
Landherr, L.5
Ralph, P.E.6
Tomsho, L.P.7
Hu, Y.8
Liang, H.9
Soltis, P.S.10
-
47
-
-
35848933673
-
The monosaccharide transporter gene family in Arabidopsis and rice: A history of duplications, adaptive evolution, and functional divergence
-
Johnson DA, Thomas MA (2007) The monosaccharide transporter gene family in Arabidopsis and rice: a history of duplications, adaptive evolution, and functional divergence. Mol Biol Evol 24: 2412-2423
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2412-2423
-
-
Johnson, D.A.1
Thomas, M.A.2
-
48
-
-
77956742948
-
The role of leucine-rich repeat proteins in plant defences
-
Jones DA, Jones JDG (1997) The role of leucine-rich repeat proteins in plant defences. Adv Bot Res 24: 90-167
-
(1997)
Adv Bot Res
, vol.24
, pp. 90-167
-
-
Jones, D.A.1
Jones, J.2
-
49
-
-
84858402388
-
The effects of alignment error and alignment filtering on the sitewise detection of positive selection
-
Jordan G, Goldman N (2012) The effects of alignment error and alignment filtering on the sitewise detection of positive selection. Mol Biol Evol 29: 1125-1139
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1125-1139
-
-
Jordan, G.1
Goldman, N.2
-
50
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
51
-
-
1542338594
-
Genomic duplication, fractionation and the origin of regulatory novelty
-
Langham RJ, Walsh J, Dunn M, Ko C, Goff SA, Freeling M (2004) Genomic duplication, fractionation and the origin of regulatory novelty. Genetics 166: 935-945
-
(2004)
Genetics
, vol.166
, pp. 935-945
-
-
Langham, R.J.1
Walsh, J.2
Dunn, M.3
Ko, C.4
Goff, S.A.5
Freeling, M.6
-
53
-
-
84894409789
-
Origin, diversity, expansion history, and functional evolution of the plant Receptor-Like Kinase/Pelle family
-
In F Tax, B Kemmerling, Springer, Berlin
-
Lehti-Shiu M, Zou C, Shiu SH (2012) Origin, diversity, expansion history, and functional evolution of the plant Receptor-Like Kinase/Pelle family. In F Tax, B Kemmerling, eds, Receptor-Like Kinases in Plants, Vol 13. Springer, Berlin, pp 1-22
-
(2012)
Receptor-Like Kinases in Plants
, vol.13
, pp. 1-22
-
-
Lehti-Shiu, M.1
Zou, C.2
Shiu, S.H.3
-
54
-
-
66149113974
-
Evolutionary history and stress regulation of plant Receptor-Like Kinase/Pelle genes
-
Lehti-Shiu MD, Zou C, Hanada K, Shiu SH (2009) Evolutionary history and stress regulation of plant Receptor-Like Kinase/Pelle genes. Plant Physiol 150: 12-26
-
(2009)
Plant Physiol
, vol.150
, pp. 12-26
-
-
Lehti-Shiu, M.D.1
Zou, C.2
Hanada, K.3
Shiu, S.H.4
-
55
-
-
84859623413
-
Ecological and genetic factors linked to contrasting genome dynamics in seed plants
-
Leitch AR, Leitch IJ (2012) Ecological and genetic factors linked to contrasting genome dynamics in seed plants. New Phytol 194: 629-646
-
(2012)
New Phytol
, vol.194
, pp. 629-646
-
-
Leitch, A.R.1
Leitch, I.J.2
-
57
-
-
23044471766
-
An algorithm for progressive multiple alignment of sequences with insertions
-
Löytynoja A, Goldman N (2005) An algorithm for progressive multiple alignment of sequences with insertions. Proc Natl Acad Sci USA 102: 10557-10562
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 10557-10562
-
-
Löytynoja, A.1
Goldman, N.2
-
58
-
-
41749103068
-
Functional adaptation of a plant receptor-kinase paved the way for the evolution of intracellular root symbioses with bacteria
-
Markmann K, Giczey G, Parniske M (2008) Functional adaptation of a plant receptor-kinase paved the way for the evolution of intracellular root symbioses with bacteria. PLoS Biol 6: e68
-
(2008)
Plos Biol
, vol.6
-
-
Markmann, K.1
Giczey, G.2
Parniske, M.3
-
59
-
-
42949157236
-
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
-
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, et al (2008) The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452: 991-996
-
(2008)
Nature
, vol.452
, pp. 991-996
-
-
Ming, R.1
Hou, S.2
Feng, Y.3
Yu, Q.4
Dionne-Laporte, A.5
Saw, J.H.6
Senin, P.7
Wang, W.8
Ly, B.V.9
Lewis, K.L.10
-
60
-
-
14744269229
-
The evolutionary dynamics of plant duplicate genes
-
Moore RC, Purugganan MD (2005) The evolutionary dynamics of plant duplicate genes. Curr Opin Plant Biol 8: 122-128
-
(2005)
Curr Opin Plant Biol
, vol.8
, pp. 122-128
-
-
Moore, R.C.1
Purugganan, M.D.2
-
61
-
-
84884316711
-
Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins
-
Mühlhausen S, Kollmar M (2013) Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins. BMC Evol Biol 13: 202
-
(2013)
BMC Evol Biol
, vol.13
, pp. 202
-
-
Mühlhausen, S.1
Kollmar, M.2
-
62
-
-
27944477670
-
Concerted and birth-and-death evolution of multigene families
-
Nei M, Rooney AP (2005) Concerted and birth-and-death evolution of multigene families. Annu Rev Genet 39: 121-152
-
(2005)
Annu Rev Genet
, vol.39
, pp. 121-152
-
-
Nei, M.1
Rooney, A.P.2
-
63
-
-
84898722418
-
Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula
-
Oh DH, Hong H, Lee SY, Yun DJ, Bohnert HJ, Dassanayake M (2014) Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula. Plant Physiol 164: 2123-2138
-
(2014)
Plant Physiol
, vol.164
, pp. 2123-2138
-
-
Oh, D.H.1
Hong, H.2
Lee, S.Y.3
Yun, D.J.4
Bohnert, H.J.5
Dassanayake, M.6
-
64
-
-
58849127342
-
Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis
-
Oh MH, Wang X, Kota U, Goshe MB, Clouse SD, Huber SC (2009) Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis. Proc Natl Acad Sci USA 106: 658-663
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 658-663
-
-
Oh, M.H.1
Wang, X.2
Kota, U.3
Goshe, M.B.4
Clouse, S.D.5
Huber, S.C.6
-
65
-
-
0031469143
-
Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato
-
Parniske M, Hammond-Kosack KE, Golstein C, Thomas CM, Jones DA, Harrison K, Wulff BBH, Jones JDG (1997) Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91: 821-832
-
(1997)
Cell
, vol.91
, pp. 821-832
-
-
Parniske, M.1
Hammond-Kosack, K.E.2
Golstein, C.3
Thomas, C.M.4
Jones, D.A.5
Harrison, K.6
Wulff, B.7
Jones, J.8
-
66
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, et al (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
Haberer, G.7
Hellsten, U.8
Mitros, T.9
Poliakov, A.10
-
67
-
-
3042836334
-
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
-
Paterson AH, Bowers JE, Chapman BA (2004) Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc Natl Acad Sci USA 101: 9903-9908
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9903-9908
-
-
Paterson, A.H.1
Bowers, J.E.2
Chapman, B.A.3
-
68
-
-
77954288890
-
An alignment confidence score capturing robustness to guide tree uncertainty
-
Penn O, Privman E, Landan G, Graur D, Pupko T (2010) An alignment confidence score capturing robustness to guide tree uncertainty. Mol Biol Evol 27: 1759-1767
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1759-1767
-
-
Penn, O.1
Privman, E.2
Landan, G.3
Graur, D.4
Pupko, T.5
-
69
-
-
22844439628
-
Placing paleopolyploidy in relation to taxon divergence: A phylogenetic analysis in legumes using 39 gene families
-
Pfeil BE, Schlueter JA, Shoemaker RC, Doyle JJ (2005) Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families. Syst Biol 54: 441-454
-
(2005)
Syst Biol
, vol.54
, pp. 441-454
-
-
Pfeil, B.E.1
Schlueter, J.A.2
Shoemaker, R.C.3
Doyle, J.J.4
-
70
-
-
84859560380
-
The cassava genome: Current progress, future directions
-
Prochnik S, Marri PR, Desany B, Rabinowicz PD, Kodira C, Mohiuddin M, Rodriguez F, Fauquet C, Tohme J, Harkins T, et al (2012) The cassava genome: current progress, future directions. Trop Plant Biol 5: 88-94
-
(2012)
Trop Plant Biol
, vol.5
, pp. 88-94
-
-
Prochnik, S.1
Marri, P.R.2
Desany, B.3
Rabinowicz, P.D.4
Kodira, C.5
Mohiuddin, M.6
Rodriguez, F.7
Fauquet, C.8
Tohme, J.9
Harkins, T.10
-
72
-
-
84907342844
-
Doubling down on genomes: Polyploidy and crop plants
-
Renny-Byfield S, Wendel JF (2014) Doubling down on genomes: polyploidy and crop plants. Am J Bot 101: 1711-1725
-
(2014)
Am J Bot
, vol.101
, pp. 1711-1725
-
-
Renny-Byfield, S.1
Wendel, J.F.2
-
73
-
-
37849032457
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
-
Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, et al (2008) The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319: 64-69
-
(2008)
Science
, vol.319
, pp. 64-69
-
-
Rensing, S.A.1
Lang, D.2
Zimmer, A.D.3
Terry, A.4
Salamov, A.5
Shapiro, H.6
Nishiyama, T.7
Perroud, P.F.8
Lindquist, E.A.9
Kamisugi, Y.10
-
74
-
-
33749357831
-
Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
-
Rizzon C, Ponger L, Gaut BS (2006) Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLOS Comput Biol 2: e115
-
(2006)
PLOS Comput Biol
, vol.2
-
-
Rizzon, C.1
Ponger, L.2
Gaut, B.S.3
-
75
-
-
84858975960
-
Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping
-
Romiguier J, Figuet E, Galtier N, Douzery EJ, Boussau B, Dutheil JY, Ranwez V (2012) Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping. PLoS ONE 7: e33852
-
(2012)
Plos ONE
, vol.7
-
-
Romiguier, J.1
Figuet, E.2
Galtier, N.3
Douzery, E.J.4
Boussau, B.5
Dutheil, J.Y.6
Ranwez, V.7
-
76
-
-
79951842938
-
Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L
-
Sato S, Hirakawa H, Isobe S, Fukai E, Watanabe A, Kato M, Kawashima K, Minami C, Muraki A, Nakazaki N, et al (2011) Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res 18: 65-76
-
(2011)
DNA Res
, vol.18
, pp. 65-76
-
-
Sato, S.1
Hirakawa, H.2
Isobe, S.3
Fukai, E.4
Watanabe, A.5
Kato, M.6
Kawashima, K.7
Minami, C.8
Muraki, A.9
Nakazaki, N.10
-
77
-
-
56149088569
-
Genome structure of the legume, Lotus japonicus
-
Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, et al (2008) Genome structure of the legume, Lotus japonicus. DNA Res 15: 227-239
-
(2008)
DNA Res
, vol.15
, pp. 227-239
-
-
Sato, S.1
Nakamura, Y.2
Kaneko, T.3
Asamizu, E.4
Kato, T.5
Nakao, M.6
Sasamoto, S.7
Watanabe, A.8
Ono, A.9
Kawashima, K.10
-
78
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, et al (2010) Genome sequence of the palaeopolyploid soybean. Nature 463: 178-183
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
Nelson, W.6
Hyten, D.L.7
Song, Q.8
Thelen, J.J.9
Cheng, J.10
-
79
-
-
79952744855
-
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
-
Schnable JC, Springer NM, Freeling M (2011) Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc Natl Acad Sci USA 108: 4069-4074
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 4069-4074
-
-
Schnable, J.C.1
Springer, N.M.2
Freeling, M.3
-
80
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, et al (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326: 1112-1115
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
-
81
-
-
84880412615
-
Analyses of the NAC transcription factor gene family in Gossypium raimondii Ulbr.: Chromosomal location, structure, phylogeny, and expression patterns
-
Shang H, Li W, Zou C, Yuan Y (2013) Analyses of the NAC transcription factor gene family in Gossypium raimondii Ulbr.: chromosomal location, structure, phylogeny, and expression patterns. J Integr Plant Biol 55: 663-676
-
(2013)
J Integr Plant Biol
, vol.55
, pp. 663-676
-
-
Shang, H.1
Li, W.2
Zou, C.3
Yuan, Y.4
-
82
-
-
0035909867
-
Plant receptor-like kinase gene family: Diversity, function, and signaling
-
Shiu SH, Bleecker AB (2001) Plant receptor-like kinase gene family: diversity, function, and signaling. Sci STKE 2001: re22
-
(2001)
Sci STKE
-
-
Shiu, S.H.1
Bleecker, A.B.2
-
83
-
-
2442591728
-
Comparative analysis of the receptor-like kinase family in Arabidopsis and rice
-
Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KFX, Li WH (2004) Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell 16: 1220-1234
-
(2004)
Plant Cell
, vol.16
, pp. 1220-1234
-
-
Shiu, S.H.1
Karlowski, W.M.2
Pan, R.3
Tzeng, Y.H.4
Mayer, K.5
Li, W.H.6
-
84
-
-
60249085527
-
Polyploidy and angiosperm diversification
-
Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, Depamphilis CW, Wall PK, Soltis PS (2009) Polyploidy and angiosperm diversification. Am J Bot 96: 336-348
-
(2009)
Am J Bot
, vol.96
, pp. 336-348
-
-
Soltis, D.E.1
Albert, V.A.2
Leebens-Mack, J.3
Bell, C.D.4
Paterson, A.H.5
Zheng, C.6
Sankoff, D.7
Depamphilis, C.W.8
Wall, P.K.9
Soltis, P.S.10
-
85
-
-
65249119459
-
Surviving the K-T mass extinction: New perspectives of polyploidization in angiosperms
-
Soltis DE, Burleigh JG (2009) Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms. Proc Natl Acad Sci USA 106: 5455-5456
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5455-5456
-
-
Soltis, D.E.1
Burleigh, J.G.2
-
86
-
-
77955930965
-
The cysteine pairs in CLV2 are not necessary for sensing the CLV3 peptide in shoot and root meristems
-
Song X, Guo P, Li C, Liu CM (2010) The cysteine pairs in CLV2 are not necessary for sensing the CLV3 peptide in shoot and root meristems. J Integr Plant Biol 52: 774-781
-
(2010)
J Integr Plant Biol
, vol.52
, pp. 774-781
-
-
Song, X.1
Guo, P.2
Li, C.3
Liu, C.M.4
-
87
-
-
84860213183
-
Probing the Arabidopsis flagellin receptor: FLS2-FLS2 association and the contributions of specific domains to signaling function
-
Sun W, Cao Y, Jansen Labby K, Bittel P, Boller T, Bent AF (2012) Probing the Arabidopsis flagellin receptor: FLS2-FLS2 association and the contributions of specific domains to signaling function. Plant Cell 24: 1096-1113
-
(2012)
Plant Cell
, vol.24
, pp. 1096-1113
-
-
Sun, W.1
Cao, Y.2
Jansen Labby, K.3
Bittel, P.4
Boller, T.5
Bent, A.F.6
-
88
-
-
84862817818
-
Adaptive evolution of Xa21 homologs in Gramineae
-
Tan S, Wang D, Ding J, Tian D, Zhang X, Yang S (2011) Adaptive evolution of Xa21 homologs in Gramineae. Genetica 139: 1465-1475
-
(2011)
Genetica
, vol.139
, pp. 1465-1475
-
-
Tan, S.1
Wang, D.2
Ding, J.3
Tian, D.4
Zhang, X.5
Yang, S.6
-
89
-
-
76249106402
-
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
-
Tang H, Bowers JE, Wang X, Paterson AH (2010a) Angiosperm genome comparisons reveal early polyploidy in the monocot lineage. Proc Natl Acad Sci USA 107: 472-477
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 472-477
-
-
Tang, H.1
Bowers, J.E.2
Wang, X.3
Paterson, A.H.4
-
90
-
-
77955432429
-
Disease resistance signature of the leucine-rich repeat receptor-like kinase genes in four plant species
-
Tang P, Zhang Y, Sun X, Tian D, Yang S, Ding J (2010b) Disease resistance signature of the leucine-rich repeat receptor-like kinase genes in four plant species. Plant Sci 179: 399-406
-
(2010)
Plant Sci
, vol.179
, pp. 399-406
-
-
Tang, P.1
Zhang, Y.2
Sun, X.3
Tian, D.4
Yang, S.5
Ding, J.6
-
91
-
-
84863693752
-
The tomato genome sequence provides insights into fleshy fruit evolution
-
Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485: 635-641
-
(2012)
Nature
, vol.485
, pp. 635-641
-
-
-
92
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, et al (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
-
93
-
-
84862956715
-
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
-
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, et al (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol 30: 83-89
-
(2012)
Nat Biotechnol
, vol.30
, pp. 83-89
-
-
Varshney, R.K.1
Chen, W.2
Li, Y.3
Bharti, A.K.4
Saxena, R.K.5
Schlueter, J.A.6
Donoghue, M.T.7
Azam, S.8
Fan, G.9
Whaley, A.M.10
-
94
-
-
77957560949
-
The genome of the domesticated apple (Malus 3 domestica Borkh.)
-
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, et al (2010) The genome of the domesticated apple (Malus 3 domestica Borkh.). Nat Genet 42: 833-839
-
(2010)
Nat Genet
, vol.42
, pp. 833-839
-
-
Velasco, R.1
Zharkikh, A.2
Affourtit, J.3
Dhingra, A.4
Cestaro, A.5
Kalyanaraman, A.6
Fontana, P.7
Bhatnagar, S.K.8
Troggio, M.9
Pruss, D.10
-
95
-
-
84878553926
-
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
-
Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, et al (2013) The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat Genet 45: 487-494
-
(2013)
Nat Genet
, vol.45
, pp. 487-494
-
-
Verde, I.1
Abbott, A.G.2
Scalabrin, S.3
Jung, S.4
Shu, S.5
Marroni, F.6
Zhebentyayeva, T.7
Dettori, M.T.8
Grimwood, J.9
Cattonaro, F.10
-
96
-
-
84861386202
-
Flagellin perception varies quantitatively in Arabidopsis thaliana and its relatives
-
Vetter MM, Kronholm I, He F, Häweker H, Reymond M, Bergelson J, Robatzek S, de Meaux J (2012) Flagellin perception varies quantitatively in Arabidopsis thaliana and its relatives. Mol Biol Evol 29: 1655-1667
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1655-1667
-
-
Vetter, M.M.1
Kronholm, I.2
He, F.3
Häweker, H.4
Reymond, M.5
Bergelson, J.6
Robatzek, S.7
De Meaux, J.8
-
97
-
-
0032076826
-
Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines racespecific recognition and is subject to adaptive evolution
-
Wang GL, Ruan DL, Song WY, Sideris S, Chen L, Pi LY, Zhang S, Zhang Z, Fauquet C, Gaut BS, et al (1998) Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines racespecific recognition and is subject to adaptive evolution. Plant Cell 10: 765-779
-
(1998)
Plant Cell
, vol.10
, pp. 765-779
-
-
Wang, G.L.1
Ruan, D.L.2
Song, W.Y.3
Sideris, S.4
Chen, L.5
Pi, L.Y.6
Zhang, S.7
Zhang, Z.8
Fauquet, C.9
Gaut, B.S.10
-
98
-
-
84866941666
-
The draft genome of a diploid cotton Gossypium raimondii
-
Wang K, Wang Z, Li F, Ye W, Wang J, Song G, Yue Z, Cong L, Shang H, Zhu S, et al (2012) The draft genome of a diploid cotton Gossypium raimondii. Nat Genet 44: 1098-1103
-
(2012)
Nat Genet
, vol.44
, pp. 1098-1103
-
-
Wang, K.1
Wang, Z.2
Li, F.3
Ye, W.4
Wang, J.5
Song, G.6
Yue, Z.7
Cong, L.8
Shang, H.9
Zhu, S.10
-
99
-
-
80053386792
-
The genome of the mesopolyploid crop species Brassica rapa
-
Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, et al (2011) The genome of the mesopolyploid crop species Brassica rapa. Nat Genet 43: 1035-1039
-
(2011)
Nat Genet
, vol.43
, pp. 1035-1039
-
-
Wang, X.1
Wang, H.2
Wang, J.3
Sun, R.4
Wu, J.5
Liu, S.6
Bai, Y.7
Mun, J.H.8
Bancroft, I.9
Cheng, F.10
-
100
-
-
84864339018
-
Insights into salt tolerance from the genome of Thellungiella salsuginea
-
Wu HJ, Zhang Z, Wang JY, Oh DH, Dassanayake M, Liu B, Huang Q, Sun HX, Xia R, Wu Y, et al (2012) Insights into salt tolerance from the genome of Thellungiella salsuginea. Proc Natl Acad Sci USA 109: 12219-12224
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 12219-12224
-
-
Wu, H.J.1
Zhang, Z.2
Wang, J.Y.3
Oh, D.H.4
Dassanayake, M.5
Liu, B.6
Huang, Q.7
Sun, H.X.8
Xia, R.9
Wu, Y.10
-
101
-
-
79960422847
-
Genome sequence and analysis of the tuber crop potato
-
Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, et al (2011) Genome sequence and analysis of the tuber crop potato. Nature 475: 189-195
-
(2011)
Nature
, vol.475
, pp. 189-195
-
-
Xu, X.1
Pan, S.2
Cheng, S.3
Zhang, B.4
Mu, D.5
Ni, P.6
Zhang, G.7
Yang, S.8
Li, R.9
Wang, J.10
-
102
-
-
84856546682
-
Divergent evolution of oxidosqualene cyclases in plants
-
Xue Z, Duan L, Liu D, Guo J, Ge S, Dicks J, ÓMáille P, Osbourn A, Qi X (2012) Divergent evolution of oxidosqualene cyclases in plants. New Phytol 193: 1022-1038
-
(2012)
New Phytol
, vol.193
, pp. 1022-1038
-
-
Xue, Z.1
Duan, L.2
Liu, D.3
Guo, J.4
Ge, S.5
Dicks, J.6
Ómáille, P.7
Osbourn, A.8
Qi, X.9
-
103
-
-
77951247055
-
A calcium/calmodulin-regulated member of the receptor-like kinase family confers cold tolerance in plants
-
Yang T, Chaudhuri S, Yang L, Du L, Poovaiah BW (2010) A calcium/calmodulin-regulated member of the receptor-like kinase family confers cold tolerance in plants. J Biol Chem 285: 7119-7126
-
(2010)
J Biol Chem
, vol.285
, pp. 7119-7126
-
-
Yang, T.1
Chaudhuri, S.2
Yang, L.3
Du, L.4
Poovaiah, B.W.5
-
104
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
105
-
-
84874397418
-
Evolution of land plant genes encoding L-Ala-D/L-Glu epimerases (AEEs) via horizontal gene transfer and positive selection
-
Yang Z, Wang Y, Zhou Y, Gao Q, Zhang E, Zhu L, Hu Y, Xu C (2013a) Evolution of land plant genes encoding L-Ala-D/L-Glu epimerases (AEEs) via horizontal gene transfer and positive selection. BMC Plant Biol 13: 34
-
(2013)
BMC Plant Biol
, vol.13
, pp. 34
-
-
Yang, Z.1
Wang, Y.2
Zhou, Y.3
Gao, Q.4
Zhang, E.5
Zhu, L.6
Hu, Y.7
Xu, C.8
-
106
-
-
84873274666
-
Molecular evolution and expression divergence of the Populus polygalacturonase supergene family shed light on the evolution of increasingly complex organs in plants
-
Yang ZL, Liu HJ, Wang XR, Zeng QY (2013b) Molecular evolution and expression divergence of the Populus polygalacturonase supergene family shed light on the evolution of increasingly complex organs in plants. New Phytol 197: 1353-1365
-
(2013)
New Phytol
, vol.197
, pp. 1353-1365
-
-
Yang, Z.L.1
Liu, H.J.2
Wang, X.R.3
Zeng, Q.Y.4
-
107
-
-
84355166513
-
The Medicago genome provides insight into the evolution of rhizobial symbioses
-
Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, et al (2011) The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480: 520-524
-
(2011)
Nature
, vol.480
, pp. 520-524
-
-
Young, N.D.1
Debellé, F.2
Oldroyd, G.E.3
Geurts, R.4
Cannon, S.B.5
Udvardi, M.K.6
Benedito, V.A.7
Mayer, K.F.8
Gouzy, J.9
Schoof, H.10
-
108
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
Yu J, Hu S, Wang J, Wong GKS, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296: 79-92
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Wong, G.4
Li, S.5
Liu, B.6
Deng, Y.7
Dai, L.8
Zhou, Y.9
Zhang, X.10
-
109
-
-
84862023110
-
Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential
-
Zhang G, Liu X, Quan Z, Cheng S, Xu X, Pan S, Xie M, Zeng P, Yue Z, Wang W, et al (2012) Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nat Biotechnol 30: 549-554
-
(2012)
Nat Biotechnol
, vol.30
, pp. 549-554
-
-
Zhang, G.1
Liu, X.2
Quan, Z.3
Cheng, S.4
Xu, X.5
Pan, S.6
Xie, M.7
Zeng, P.8
Yue, Z.9
Wang, W.10
-
110
-
-
33751503207
-
Domain-specific positive selection contributes to the evolution of Arabidopsis leucine-rich repeat receptor-like kinase (LRR RLK) genes
-
Zhang XS, Choi JH, Heinz J, Chetty CS (2006) Domain-specific positive selection contributes to the evolution of Arabidopsis leucine-rich repeat receptor-like kinase (LRR RLK) genes. J Mol Evol 63: 612-621
-
(2006)
J Mol Evol
, vol.63
, pp. 612-621
-
-
Zhang, X.S.1
Choi, J.H.2
Heinz, J.3
Chetty, C.S.4
-
111
-
-
70349225934
-
Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice
-
Zou C, Lehti-Shiu MD, Thibaud-Nissen F, Prakash T, Buell CR, Shiu SH (2009) Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice. Plant Physiol 151: 3-15
-
(2009)
Plant Physiol
, vol.151
, pp. 3-15
-
-
Zou, C.1
Lehti-Shiu, M.D.2
Thibaud-Nissen, F.3
Prakash, T.4
Buell, C.R.5
Shiu, S.H.6
|