-
1
-
-
0036000022
-
Overexpression of polygalacturonase in transgenic apple trees leads to a range of novel phenotypes involving changes in cell adhesion
-
Atkinson RG, Schroder R, Hallett IC, Cohen D, MacRae EA. 2002. Overexpression of polygalacturonase in transgenic apple trees leads to a range of novel phenotypes involving changes in cell adhesion. Plant Physiology 129: 122-133.
-
(2002)
Plant Physiology
, vol.129
, pp. 122-133
-
-
Atkinson, R.G.1
Schroder, R.2
Hallett, I.C.3
Cohen, D.4
MacRae, E.A.5
-
2
-
-
79956309501
-
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
-
Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, et al. 2011. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332: 960-963.
-
(2011)
Science
, vol.332
, pp. 960-963
-
-
Banks, J.A.1
Nishiyama, T.2
Hasebe, M.3
Bowman, J.L.4
Gribskov, M.5
dePamphilis, C.6
Albert, V.A.7
Aono, N.8
Aoyama, T.9
Ambrose, B.A.10
-
3
-
-
33644832083
-
Pectin methylesterases and pectin dynamics in pollen tubes
-
Bosch M, Hepler PK. 2005. Pectin methylesterases and pectin dynamics in pollen tubes. Plant Cell 17: 3219-3226.
-
(2005)
Plant Cell
, vol.17
, pp. 3219-3226
-
-
Bosch, M.1
Hepler, P.K.2
-
4
-
-
34147164708
-
Green genes-comparative genomics of the green branch of life
-
Bowman JL, Floyd SK, Sakakibara K. 2007. Green genes-comparative genomics of the green branch of life. Cell 129: 229-234.
-
(2007)
Cell
, vol.129
, pp. 229-234
-
-
Bowman, J.L.1
Floyd, S.K.2
Sakakibara, K.3
-
5
-
-
33646859550
-
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
-
Casneuf T, De Bodt S, Raes J, Maere S, Van de Peer Y. 2006. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biology 7: R13.
-
(2006)
Genome Biology
, vol.7
-
-
Casneuf, T.1
De Bodt, S.2
Raes, J.3
Maere, S.4
Van de Peer, Y.5
-
6
-
-
0032825011
-
K-estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals
-
Comeron JM. 1999. K-estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals. Bioinformatics 15: 763-764.
-
(1999)
Bioinformatics
, vol.15
, pp. 763-764
-
-
Comeron, J.M.1
-
7
-
-
34248531753
-
Locating proteins in the cell using targetP, signalP and related tools
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H. 2007. Locating proteins in the cell using targetP, signalP and related tools. Nature Protocols 2: 953-971.
-
(2007)
Nature Protocols
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
8
-
-
71249138246
-
Molecular cloning and characterization of a ripening-induced polygalacturonase related to papaya fruit softening
-
Fabi JP, Cordenunsi BR, Seymour GB, Lajolo FM, do Nascimento JR. 2009. Molecular cloning and characterization of a ripening-induced polygalacturonase related to papaya fruit softening. Plant Physiology and Biochemistry 47: 1075-1081.
-
(2009)
Plant Physiology and Biochemistry
, vol.47
, pp. 1075-1081
-
-
Fabi, J.P.1
Cordenunsi, B.R.2
Seymour, G.B.3
Lajolo, F.M.4
do Nascimento, J.R.5
-
10
-
-
0036890022
-
Rapid divergence in expression between duplicate genes inferred from microarray data
-
Gu Z, Nicolae D, Lu HH, Li WH. 2002. Rapid divergence in expression between duplicate genes inferred from microarray data. Trends in Genetics 18: 609-613.
-
(2002)
Trends in Genetics
, vol.18
, pp. 609-613
-
-
Gu, Z.1
Nicolae, D.2
Lu, H.H.3
Li, W.H.4
-
11
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
-
(2003)
Systematic Biology
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
12
-
-
0032089059
-
Polygalacturonases: many genes in search of a function
-
Hadfield KA, Bennett AB. 1998. Polygalacturonases: many genes in search of a function. Plant Physiology 117: 337-343.
-
(1998)
Plant Physiology
, vol.117
, pp. 337-343
-
-
Hadfield, K.A.1
Bennett, A.B.2
-
13
-
-
0002051540
-
Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/nt
-
Hall TA. 1999. Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/nt. Nucleic Acids Symposium Series 41: 95-98.
-
(1999)
Nucleic Acids Symposium Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
14
-
-
80053194329
-
Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication
-
Huerta-Cepas J, Dopazo J, Huynen MA, Gabaldon T. 2011. Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Briefings in Bioinformatics 12: 442-448.
-
(2011)
Briefings in Bioinformatics
, vol.12
, pp. 442-448
-
-
Huerta-Cepas, J.1
Dopazo, J.2
Huynen, M.A.3
Gabaldon, T.4
-
15
-
-
40549121251
-
Recent advances in plant cell wall proteomics
-
Jamet E, Albenne C, Boudart G, Irshad M, Canut H, Pont-Lezica R. 2008. Recent advances in plant cell wall proteomics. Proteomics 8: 893-908.
-
(2008)
Proteomics
, vol.8
, pp. 893-908
-
-
Jamet, E.1
Albenne, C.2
Boudart, G.3
Irshad, M.4
Canut, H.5
Pont-Lezica, R.6
-
17
-
-
33750458680
-
Patterns of expansion and expression divergence in the plant polygalacturonase gene family
-
Kim J, Shiu SH, Thoma S, Li WH, Patterson SE. 2006. Patterns of expansion and expression divergence in the plant polygalacturonase gene family. Genome Biology 7: R87.
-
(2006)
Genome Biology
, vol.7
-
-
Kim, J.1
Shiu, S.H.2
Thoma, S.3
Li, W.H.4
Patterson, S.E.5
-
18
-
-
84873273982
-
Genome-wide analysis of the LEA (late embryogenesis abundant) protein gene family in Populus trichocarpa
-
doi:10.1007/s11295-11012-10551-11292.
-
Lan T, Gao J, Zeng QY. 2012. Genome-wide analysis of the LEA (late embryogenesis abundant) protein gene family in Populus trichocarpa. Tree Genetics and Genomes. doi:10.1007/s11295-11012-10551-11292.
-
(2012)
Tree Genetics and Genomes
-
-
Lan, T.1
Gao, J.2
Zeng, Q.Y.3
-
19
-
-
75649127974
-
Extensive functional diversification of the Populus glutathione S-transferase supergene family
-
Lan T, Yang ZL, Yang X, Liu YJ, Wang XR, Zeng QY. 2009. Extensive functional diversification of the Populus glutathione S-transferase supergene family. Plant Cell 21: 3749-3766.
-
(2009)
Plant Cell
, vol.21
, pp. 3749-3766
-
-
Lan, T.1
Yang, Z.L.2
Yang, X.3
Liu, Y.J.4
Wang, X.R.5
Zeng, Q.Y.6
-
20
-
-
33644664220
-
Identification of a gene in the process of being lost from the genus Agrostis
-
Li HM, Rotter D, Bonos SA, Meyer WA, Belanger FC. 2005a. Identification of a gene in the process of being lost from the genus Agrostis. Plant Physiology 138: 2386-2395.
-
(2005)
Plant Physiology
, vol.138
, pp. 2386-2395
-
-
Li, H.M.1
Rotter, D.2
Bonos, S.A.3
Meyer, W.A.4
Belanger, F.C.5
-
21
-
-
26444488575
-
Expression divergence between duplicate genes
-
Li WH, Yang J, Gu X. 2005b. Expression divergence between duplicate genes. Trends in Genetics 21: 602-607.
-
(2005)
Trends in Genetics
, vol.21
, pp. 602-607
-
-
Li, W.H.1
Yang, J.2
Gu, X.3
-
22
-
-
0037390933
-
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
-
Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW. 2003. Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15: 809-834.
-
(2003)
Plant Cell
, vol.15
, pp. 809-834
-
-
Meyers, B.C.1
Kozik, A.2
Griego, A.3
Kuang, H.4
Michelmore, R.W.5
-
23
-
-
43849099222
-
Pectin structure and biosynthesis
-
Mohnen D. 2008. Pectin structure and biosynthesis. Current Opinion in Plant Biology 11: 266-277.
-
(2008)
Current Opinion in Plant Biology
, vol.11
, pp. 266-277
-
-
Mohnen, D.1
-
24
-
-
0032483029
-
MsPG3, a Medicago sativa polygalacturonase gene expressed during the alfalfa-Rhizobium meliloti interaction
-
Munoz JA, Coronado C, Perez-Hormaeche J, Kondorosi A, Ratet P, Palomares AJ. 1998. MsPG3, a Medicago sativa polygalacturonase gene expressed during the alfalfa-Rhizobium meliloti interaction. Proceedings of the National Academy of Sciences, USA 95: 9687-9692.
-
(1998)
Proceedings of the National Academy of Sciences, USA
, vol.95
, pp. 9687-9692
-
-
Munoz, J.A.1
Coronado, C.2
Perez-Hormaeche, J.3
Kondorosi, A.4
Ratet, P.5
Palomares, A.J.6
-
25
-
-
62549093973
-
ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are polygalacturonases required for cell separation during reproductive development in Arabidopsis
-
Ogawa M, Kay P, Wilson S, Swain SM. 2009. ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are polygalacturonases required for cell separation during reproductive development in Arabidopsis. Plant Cell 21: 216-233.
-
(2009)
Plant Cell
, vol.21
, pp. 216-233
-
-
Ogawa, M.1
Kay, P.2
Wilson, S.3
Swain, S.M.4
-
26
-
-
0142245616
-
Polygalacturonase β-subunit antisense gene expression in tomato plants leads to a progressive enhanced wound response and necrosis in leaves and abscission of developing flowers
-
Orozco-Cardenas ML, Ryan CA. 2003. Polygalacturonase β-subunit antisense gene expression in tomato plants leads to a progressive enhanced wound response and necrosis in leaves and abscission of developing flowers. Plant Physiology 133: 693-701.
-
(2003)
Plant Physiology
, vol.133
, pp. 693-701
-
-
Orozco-Cardenas, M.L.1
Ryan, C.A.2
-
27
-
-
43849098246
-
Evolution and diversity of green plant cell walls
-
Popper ZA. 2008. Evolution and diversity of green plant cell walls. Current Opinion in Plant Biology 11: 286-292.
-
(2008)
Current Opinion in Plant Biology
, vol.11
, pp. 286-292
-
-
Popper, Z.A.1
-
28
-
-
79955540258
-
Expression of a yeast polygalacturonase gene in Arabidopsis thaliana
-
Prieto-Alcedo M, Veiga-Crespo P, Poza M, Coronado C, Zarra I, Villa T. 2011. Expression of a yeast polygalacturonase gene in Arabidopsis thaliana. Biologia Plantarum 55: 349-352.
-
(2011)
Biologia Plantarum
, vol.55
, pp. 349-352
-
-
Prieto-Alcedo, M.1
Veiga-Crespo, P.2
Poza, M.3
Coronado, C.4
Zarra, I.5
Villa, T.6
-
29
-
-
37849032457
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
-
Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, et al. 2008. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319: 64-69.
-
(2008)
Science
, vol.319
, pp. 64-69
-
-
Rensing, S.A.1
Lang, D.2
Zimmer, A.D.3
Terry, A.4
Salamov, A.5
Shapiro, H.6
Nishiyama, T.7
Perroud, P.F.8
Lindquist, E.A.9
Kamisugi, Y.10
-
30
-
-
34248653184
-
Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants
-
Sparkes IA, Runions J, Kearns A, Hawes C. 2006. Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants. Nature Protocols 1: 2019-2025.
-
(2006)
Nature Protocols
, vol.1
, pp. 2019-2025
-
-
Sparkes, I.A.1
Runions, J.2
Kearns, A.3
Hawes, C.4
-
31
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, et al. 2006. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
-
32
-
-
67649807807
-
Natural paradigms of plant cell wall degradation
-
Wei H, Xu Q, Taylor LE, Baker JO, Tucker MP, Ding SY. 2009. Natural paradigms of plant cell wall degradation. Current Opinion in Biotechnology 20: 330-338.
-
(2009)
Current Opinion in Biotechnology
, vol.20
, pp. 330-338
-
-
Wei, H.1
Xu, Q.2
Taylor, L.E.3
Baker, J.O.4
Tucker, M.P.5
Ding, S.Y.6
-
33
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution 24: 1586-1591.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
34
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang Z, Nielsen R. 2000. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Molecular Biology and Evolution 17: 32-43.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
35
-
-
77955708071
-
Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8
-
Yin Y, Chen H, Hahn MG, Mohnen D, Xu Y. 2010. Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8. Plant Physiology 153: 1729-1746.
-
(2010)
Plant Physiology
, vol.153
, pp. 1729-1746
-
-
Yin, Y.1
Chen, H.2
Hahn, M.G.3
Mohnen, D.4
Xu, Y.5
-
36
-
-
70349225934
-
Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice
-
Zou C, Lehti-Shiu MD, Thibaud-Nissen F, Prakash T, Buell CR, Shiu SH. 2009. Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice. Plant Physiology 151: 3-15.
-
(2009)
Plant Physiology
, vol.151
, pp. 3-15
-
-
Zou, C.1
Lehti-Shiu, M.D.2
Thibaud-Nissen, F.3
Prakash, T.4
Buell, C.R.5
Shiu, S.H.6
|