메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOTECHNOLOGY; CONTROLLED STUDY; DNA SEQUENCE; GENE IDENTIFICATION; GENETIC DATABASE; GENETIC SELECTION; NONHUMAN; PEACH; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; STRUCTURAL BIOINFORMATICS; BIOLOGY; GENETICS; PLANT GENOME; PRUNUS;

EID: 81455161623     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-569     Document Type: Article
Times cited : (63)

References (24)
  • 5
    • 38549148784 scopus 로고    scopus 로고
    • High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology
    • 10.1186/1471-2164-8-424, 2212664, 18021442
    • Lijavetzky D, Cabezas JA, Ibáñez A, Rodríguez V, Martínez-Zapater JM. High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology. BMC Genomics 2007, 8:424. 10.1186/1471-2164-8-424, 2212664, 18021442.
    • (2007) BMC Genomics , vol.8 , pp. 424
    • Lijavetzky, D.1    Cabezas, J.A.2    Ibáñez, A.3    Rodríguez, V.4    Martínez-Zapater, J.M.5
  • 6
    • 0036008761 scopus 로고    scopus 로고
    • Applications of single nucleotide polymorphisms in crop genetics
    • 10.1016/S1369-5266(02)00240-6, 11856602
    • Rafalski A. Applications of single nucleotide polymorphisms in crop genetics. Current Opinion in Plant Biology 2002, 5:94-100. 10.1016/S1369-5266(02)00240-6, 11856602.
    • (2002) Current Opinion in Plant Biology , vol.5 , pp. 94-100
    • Rafalski, A.1
  • 7
    • 64749093353 scopus 로고    scopus 로고
    • SNP Discovery in Plants
    • CAB International
    • Edward KJ, Poole RL, Barker GL. SNP Discovery in Plants. 2008, CAB International.
    • (2008)
    • Edward, K.J.1    Poole, R.L.2    Barker, G.L.3
  • 8
    • 77952734936 scopus 로고    scopus 로고
    • High-throughput DNA sequencing - concepts and limitations
    • Kircher M, Kelso J. High-throughput DNA sequencing - concepts and limitations. BioEssays 2010, 32:6 524-536.
    • (2010) BioEssays , vol.32
    • Kircher, M.1    Kelso, J.2
  • 9
    • 36849073678 scopus 로고    scopus 로고
    • Sequencing breakthroughs for genomic ecology and evolutionary biology
    • 10.1111/j.1471-8286.2007.02019.x, 21585713
    • Hudson M. Sequencing breakthroughs for genomic ecology and evolutionary biology. Mol Ecol Resour 2008, 8:3-17. 10.1111/j.1471-8286.2007.02019.x, 21585713.
    • (2008) Mol Ecol Resour , vol.8 , pp. 3-17
    • Hudson, M.1
  • 10
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • 10.1016/j.tig.2007.12.007, 18262675
    • Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24:133-141. 10.1016/j.tig.2007.12.007, 18262675.
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 11
    • 80051920782 scopus 로고    scopus 로고
    • Ultrafast and low-cost DNA sequencing methods for applied genomics research
    • Gupta PK. Ultrafast and low-cost DNA sequencing methods for applied genomics research. Proc Nat Acad Sci India 2008, 78:91-102.
    • (2008) Proc Nat Acad Sci India , vol.78 , pp. 91-102
    • Gupta, P.K.1
  • 12
    • 77956279237 scopus 로고    scopus 로고
    • Assembly of large genomes using second-generation sequencing
    • 10.1101/gr.101360.109, 2928494, 20508146
    • Schatz MC, Delcher AL, Salzberg SL. Assembly of large genomes using second-generation sequencing. Genome Res 2010, 20:1165-1173. 10.1101/gr.101360.109, 2928494, 20508146.
    • (2010) Genome Res , vol.20 , pp. 1165-1173
    • Schatz, M.C.1    Delcher, A.L.2    Salzberg, S.L.3
  • 13
    • 34548829882 scopus 로고    scopus 로고
    • Measuring transcription rate in isolated Arabidopsis nuclei
    • 10.1038/nprot.2006.471, 17406505
    • Folta KM, Kaufman LS. Measuring transcription rate in isolated Arabidopsis nuclei. Nature Protocols 2006, 1:3094-3100. 10.1038/nprot.2006.471, 17406505.
    • (2006) Nature Protocols , vol.1 , pp. 3094-3100
    • Folta, K.M.1    Kaufman, L.S.2
  • 14
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler Transform
    • 10.1093/bioinformatics/btp324, 2705234, 19451168
    • Li H, Durban R. Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics 2009, 25:1754-60. 10.1093/bioinformatics/btp324, 2705234, 19451168.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durban, R.2
  • 15
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler Transform
    • (PMID: 20080505)
    • Li H, Durban R. Fast and accurate long-read alignment with Burrows-Wheeler Transform. Bioinformatics 2010, (PMID: 20080505).
    • (2010) Bioinformatics
    • Li, H.1    Durban, R.2
  • 16
    • 68549104404 scopus 로고    scopus 로고
    • 1000 Genome Project Data Processing Subgroup. The Sequence alignment/map (SAM) format and SAM tools
    • 10.1093/bioinformatics/btp352, 2723002, 19505943
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 1000 Genome Project Data Processing Subgroup. The Sequence alignment/map (SAM) format and SAM tools. Bioinformatics 2009, 25:2078-9. 10.1093/bioinformatics/btp352, 2723002, 19505943.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6    Marth, G.7    Abecasis, G.8    Durbin, R.9
  • 17
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • 10.1101/gr.078212.108, 2577856, 18714091
    • Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18:1851-1858. 10.1101/gr.078212.108, 2577856, 18714091.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 18
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • 10.1101/gr.074492.107, 2336801, 18349386
    • Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829. 10.1101/gr.074492.107, 2336801, 18349386.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 19
    • 77949511368 scopus 로고    scopus 로고
    • Pebble and Rock Band: Heuristic resolution of repeats and scaffolding in the Velvet short-read de novo Assembler
    • 10.1371/journal.pone.0008407, 2793427, 20027311
    • Zerbino DR, McEwen GK, Marguilies EH, Birney E. Pebble and Rock Band: Heuristic resolution of repeats and scaffolding in the Velvet short-read de novo Assembler. PLoS ONE 2009, 4(12):e8407. 10.1371/journal.pone.0008407, 2793427, 20027311.
    • (2009) PLoS ONE , vol.4 , Issue.12
    • Zerbino, D.R.1    McEwen, G.K.2    Marguilies, E.H.3    Birney, E.4
  • 20
    • 77956193448 scopus 로고    scopus 로고
    • Progressive Mauve: Multiple Genome Alignment with Gene Gain, Loss, and Rearrangement
    • 10.1371/journal.pone.0011147, 2892488, 20593022
    • Darling AE, Mau B, Perna NT. Progressive Mauve: Multiple Genome Alignment with Gene Gain, Loss, and Rearrangement. PLoS One 2010, 5:e11147. 10.1371/journal.pone.0011147, 2892488, 20593022., http://asap.ahabs.wisc.edu/mauve/
    • (2010) PLoS One , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 23
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • 10.1093/nar/gkn425, 2532726, 18660515
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36:e105. 10.1093/nar/gkn425, 2532726, 18660515.
    • (2008) Nucleic Acids Res , vol.36
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.