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Volumn 15, Issue 2, 2016, Pages 542-557

Analysis of signaling endosome composition and dynamics using silac in embryonic stem cell-derived neurons

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; ARGININE; CHOLINE ACETYLTRANSFERASE; COPPER ZINC SUPEROXIDE DISMUTASE; GLUTATHIONE TRANSFERASE; LYSINE; MONOCRYSTALLINE IRON OXIDE NANOPARTICLE; NEUROTOXIN; NEUROTROPHIN; NEUROTROPHIN RECEPTOR; RIBOSOME PROTEIN; STABLE ISOTOPE; TETANUS TOXIN; FERRIC ION; FERRIC OXIDE; METAL NANOPARTICLE; METALLOPROTEINASE; NERVE GROWTH FACTOR; TETANOSPASMIN;

EID: 84957900076     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M115.051649     Document Type: Article
Times cited : (31)

References (70)
  • 2
    • 47149095748 scopus 로고    scopus 로고
    • Molecular landmarks along the axonal route: Axonal transport in health and disease
    • Salinas, S., Bilsland, L. G., and Schiavo, G. (2008) Molecular landmarks along the axonal route: Axonal transport in health and disease. Curr. Opin. Cell Biol. 20, 445-453
    • (2008) Curr. Opin. Cell Biol , vol.20 , pp. 445-453
    • Salinas, S.1    Bilsland, L.G.2    Schiavo, G.3
  • 3
    • 0037762690 scopus 로고    scopus 로고
    • Neurotrophins and their receptors: A convergence point for many signaling pathways
    • Chao, M. V. (2003) Neurotrophins and their receptors: A convergence point for many signaling pathways. Nat. Rev. Neurosci. 4, 299-309
    • (2003) Nat. Rev. Neurosci , vol.4 , pp. 299-309
    • Chao, M.V.1
  • 4
    • 77955597073 scopus 로고    scopus 로고
    • A hitchhikers guide to the nervous system: The complex journey of viruses and toxins
    • Salinas, S., Schiavo, G., and Kremer, E. J. (2010) A hitchhikers guide to the nervous system: The complex journey of viruses and toxins. Nat. Rev. Microbiol. 8, 645-655
    • (2011) Nat. Rev. Microbiol , vol.8 , pp. 645-655
    • Salinas, S.1    Schiavo, G.2    Kremer, E.J.3
  • 5
    • 35948982195 scopus 로고    scopus 로고
    • Neurotrophins redirect p75NTR from a clathrin-independent to a clathrin-dependent endocytic pathway coupled to axonal transport
    • Deinhardt, K., Reversi, A., Berninghausen, O., Hopkins, C. R., and Schiavo, G. (2007) Neurotrophins redirect p75NTR from a clathrin-independent to a clathrin-dependent endocytic pathway coupled to axonal transport. Traffic 8, 1736-1749
    • (2007) Traffic , vol.8 , pp. 1736-1749
    • Deinhardt, K.1    Reversi, A.2    Berninghausen, O.3    Hopkins, C.R.4    Schiavo, G.5
  • 7
    • 84908246114 scopus 로고    scopus 로고
    • Axonal transport: Cargo-specific mechanisms of motility and regulation
    • Maday, S., Twelvetrees, A. E., Moughamian, A. J., and Holzbaur, E. L. (2014) Axonal transport: cargo-specific mechanisms of motility and regulation. Neuron 84, 292-309
    • (2014) Neuron , vol.84 , pp. 292-309
    • Maday, S.1    Twelvetrees, A.E.2    Moughamian, A.J.3    Holzbaur, E.L.4
  • 8
    • 84875443717 scopus 로고    scopus 로고
    • Axonal transport deficits and neurodegenerative diseases
    • Millecamps, S., and Julien, J. P. (2013) Axonal transport deficits and neurodegenerative diseases. Nat. Rev. Neurosci. 14, 161-176
    • (2013) Nat. Rev. Neurosci , vol.14 , pp. 161-176
    • Millecamps, S.1    Julien, J.P.2
  • 11
    • 84860272533 scopus 로고    scopus 로고
    • Dynactin is required for transport initiation from the distal axon
    • Moughamian, A. J., and Holzbaur, E. L. (2012) Dynactin is required for transport initiation from the distal axon. Neuron 74, 331-343
    • (2012) Neuron , vol.74 , pp. 331-343
    • Moughamian, A.J.1    Holzbaur, E.L.2
  • 13
    • 84901273024 scopus 로고    scopus 로고
    • Signaling endosomes in axonal transport: Travel updates on the molecular highway
    • Schmieg, N., Menendez, G., Schiavo, G., and Terenzio, M. (2014) Signaling endosomes in axonal transport: Travel updates on the molecular highway. Semin. Cell Dev. Biol. 27, 32-43
    • (2014) Semin. Cell Dev. Biol , vol.27 , pp. 32-43
    • Schmieg, N.1    Menendez, G.2    Schiavo, G.3    Terenzio, M.4
  • 14
    • 0037899137 scopus 로고    scopus 로고
    • NGF signaling in sensory neurons: Evidence that early endosomes carry NGF retrograde signals
    • Delcroix, J. D., Valletta, J. S., Wu, C., Hunt, S. J., Kowal, A. S., and Mobley, W. C. (2003) NGF signaling in sensory neurons: evidence that early endosomes carry NGF retrograde signals. Neuron 39, 69-84
    • (2003) Neuron , vol.39 , pp. 69-84
    • Delcroix, J.D.1    Valletta, J.S.2    Wu, C.3    Hunt, S.J.4    Kowal, A.S.5    Mobley, W.C.6
  • 17
    • 67249148601 scopus 로고    scopus 로고
    • High-resolution fractionation of signaling endosomes containing different receptors
    • McCaffrey, G., Welker, J., Scott, J., der Salm, L., and Grimes, M. L. (2009) High-resolution fractionation of signaling endosomes containing different receptors. Traffic 10, 938-950
    • (2009) Traffic , vol.10 , pp. 938-950
    • McCaffrey, G.1    Welker, J.2    Scott, J.3    Der Salm, L.4    Grimes, M.L.5
  • 18
    • 84893719790 scopus 로고    scopus 로고
    • Coronin-1 is a neurotrophin endosomal effector that is required for developmental competition for survival
    • Suo, D., Park, J., Harrington, A. W., Zweifel, L. S., Mihalas, S., and Deppmann, C. D. (2014) Coronin-1 is a neurotrophin endosomal effector that is required for developmental competition for survival. Nat. Neurosci. 17, 36-45
    • (2014) Nat. Neurosci , vol.17 , pp. 36-45
    • Suo, D.1    Park, J.2    Harrington, A.W.3    Zweifel, L.S.4    Mihalas, S.5    Deppmann, C.D.6
  • 19
    • 60649118104 scopus 로고    scopus 로고
    • The coming of age of axonal neurotrophin signaling endosomes
    • Wu, C., Cui, B., He, L., Chen, L., and Mobley, W. C. (2009) The coming of age of axonal neurotrophin signaling endosomes. J. Proteomics 72, 46-55
    • (2009) J. Proteomics , vol.72 , pp. 46-55
    • Wu, C.1    Cui, B.2    He, L.3    Chen, L.4    Mobley, W.C.5
  • 23
    • 84907424853 scopus 로고    scopus 로고
    • Proteomic approaches to dissect neuronal signaling pathways
    • Bowling, H. L., and Deinhardt, K. (2014) Proteomic approaches to dissect neuronal signaling pathways. Adv. Exp. Med. Biol. 806, 499-508
    • (2014) Adv. Exp. Med. Biol , vol.806 , pp. 499-508
    • Bowling, H.L.1    Deinhardt, K.2
  • 24
    • 84922886093 scopus 로고    scopus 로고
    • Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics
    • Hornburg, D., Drepper, C., Butter, F., Meissner, F., Sendtner, M., and Mann, M. (2014) Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics. Mol. Cell. Proteomics 13, 3410-3420
    • (2014) Mol. Cell. Proteomics , vol.13 , pp. 3410-3420
    • Hornburg, D.1    Drepper, C.2    Butter, F.3    Meissner, F.4    Sendtner, M.5    Mann, M.6
  • 26
    • 55749088807 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice
    • Liao, L., Park, S. K., Xu, T., Vanderklish, P., and Yates, J. R., 3rd. (2008) Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice. Proc. Natl. Acad. Sci. U.S.A. 105, 15281-15286
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 15281-15286
    • Liao, L.1    Park, S.K.2    Xu, T.3    Vanderklish, P.4    Yates, J.R.5
  • 29
    • 34249080786 scopus 로고    scopus 로고
    • Derivation of mouse embryonic stem cells
    • Bryja, V., Bonilla, S., and Arenas, E. (2006) Derivation of mouse embryonic stem cells. Nat. Protoc. 1, 2082-2087
    • (2006) Nat. Protoc , vol.1 , pp. 2082-2087
    • Bryja, V.1    Bonilla, S.2    Arenas, E.3
  • 30
    • 83455229793 scopus 로고    scopus 로고
    • Arl8 and SKIP act together to link lysosomes to kinesin-1
    • Rosa-Ferreira, C., and Munro, S. (2011) Arl8 and SKIP act together to link lysosomes to kinesin-1. Dev. Cell 21, 1171-1178
    • (2011) Dev. Cell , vol.21 , pp. 1171-1178
    • Rosa-Ferreira, C.1    Munro, S.2
  • 31
    • 0037148530 scopus 로고    scopus 로고
    • Analysis of retrograde transport in motor neurons reveals common endocytic carriers for tetanus toxin and neurotrophin receptor p75NTR
    • Lalli, G., and Schiavo, G. (2002) Analysis of retrograde transport in motor neurons reveals common endocytic carriers for tetanus toxin and neurotrophin receptor p75NTR. J. Cell Biol. 156, 233-239
    • (2002) J. Cell Biol , vol.156 , pp. 233-239
    • Lalli, G.1    Schiavo, G.2
  • 32
    • 28644440548 scopus 로고    scopus 로고
    • A novel endocytic recycling signal distinguishes biological responses of Trk neurotrophin receptors
    • Chen, Z. Y., Ieraci, A., Tanowitz, M., and Lee, F. S. (2005) A novel endocytic recycling signal distinguishes biological responses of Trk neurotrophin receptors. Mol. Biol. Cell 16, 5761-5772
    • (2005) Mol. Biol. Cell , vol.16 , pp. 5761-5772
    • Chen, Z.Y.1    Ieraci, A.2    Tanowitz, M.3    Lee, F.S.4
  • 33
    • 29644438627 scopus 로고    scopus 로고
    • Tetanus toxin is transported in a novel neuronal compartment characterized by a specialized pH regulation
    • Bohnert, S., and Schiavo, G. (2005) Tetanus toxin is transported in a novel neuronal compartment characterized by a specialized pH regulation. J. Biol. Chem. 280, 42336-42344
    • (2005) J. Biol. Chem , vol.280 , pp. 42336-42344
    • Bohnert, S.1    Schiavo, G.2
  • 34
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S.-E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 376-386
    • Ong, S.-E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 35
    • 45749144385 scopus 로고    scopus 로고
    • Stable isotopic labeling by amino acids in cultured primary neurons: Application to brain-derived neurotrophic factor-dependent phosphotyrosine-Associated signaling
    • Spellman, D. S., Deinhardt, K., Darie, C. C., Chao, M. V., and Neubert, T. A. (2008) Stable isotopic labeling by amino acids in cultured primary neurons: Application to brain-derived neurotrophic factor-dependent phosphotyrosine-Associated signaling. Mol. Cell. Proteomics 7, 1067-1076
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 1067-1076
    • Spellman, D.S.1    Deinhardt, K.2    Darie, C.C.3    Chao, M.V.4    Neubert, T.A.5
  • 36
    • 38449116842 scopus 로고    scopus 로고
    • Superoxide dismutase 1 mutants related to amyotrophic lateral sclerosis induce endoplasmic stress in neuro2a cells
    • Oh, Y. K., Shin, K. S., Yuan, J., and Kang, S. J. (2008) Superoxide dismutase 1 mutants related to amyotrophic lateral sclerosis induce endoplasmic stress in neuro2a cells. J. Neurochem. 104, 993-1005
    • (2008) J. Neurochem , vol.104 , pp. 993-1005
    • Oh, Y.K.1    Shin, K.S.2    Yuan, J.3    Kang, S.J.4
  • 37
    • 38849199865 scopus 로고    scopus 로고
    • Characterization and use of the NSC-34 cell line for study of neurotrophin receptor trafficking
    • Matusica, D., Fenech, M. P., Rogers, M. L., and Rush, R. A. (2008) Characterization and use of the NSC-34 cell line for study of neurotrophin receptor trafficking. J. Neurosci. Res. 86, 553-565
    • (2008) J. Neurosci. Res , vol.86 , pp. 553-565
    • Matusica, D.1    Fenech, M.P.2    Rogers, M.L.3    Rush, R.A.4
  • 38
    • 0037047320 scopus 로고    scopus 로고
    • Directed differentiation of embryonic stem cells into motor neurons
    • Wichterle, H., Lieberam, I., Porter, J. A., and Jessell, T. M. (2002) Directed differentiation of embryonic stem cells into motor neurons. Cell 110, 385-397
    • (2002) Cell , vol.110 , pp. 385-397
    • Wichterle, H.1    Lieberam, I.2    Porter, J.A.3    Jessell, T.M.4
  • 39
    • 84901282205 scopus 로고    scopus 로고
    • SiRNA screen of ES cell-derived motor neurons identifies novel regulators of tetanus toxin and neurotrophin receptor trafficking
    • Terenzio, M., Golding, M., and Schiavo, G. (2014) siRNA screen of ES cell-derived motor neurons identifies novel regulators of tetanus toxin and neurotrophin receptor trafficking. Front. Cell. Neurosci. 8, 140
    • (2014) Front. Cell. Neurosci , vol.8 , pp. 140
    • Terenzio, M.1    Golding, M.2    Schiavo, G.3
  • 41
    • 84879566490 scopus 로고    scopus 로고
    • Recent advances in quantitative neuroproteomics
    • Craft, G. E., Chen, A., and Nairn, A. C. (2013) Recent advances in quantitative neuroproteomics. Methods 61, 186-218
    • (2013) Methods , vol.61 , pp. 186-218
    • Craft, G.E.1    Chen, A.2    Nairn, A.C.3
  • 42
    • 34250372908 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture for quantitative proteomics
    • Ong, S. E., and Mann, M. (2007) Stable isotope labeling by amino acids in cell culture for quantitative proteomics. Methods Mol. Biol. 359, 37-52
    • (2007) Methods Mol. Biol , vol.359 , pp. 37-52
    • Ong, S.E.1    Mann, M.2
  • 43
    • 0141668887 scopus 로고    scopus 로고
    • Evidence for a role of SNX16 in regulating traffic between the early and later endosomal compartments
    • Hanson, B. J., and Hong, W. (2003) Evidence for a role of SNX16 in regulating traffic between the early and later endosomal compartments. J. Biol. Chem. 278, 34617-34630
    • (2003) J. Biol. Chem , vol.278 , pp. 34617-34630
    • Hanson, B.J.1    Hong, W.2
  • 45
    • 14644393694 scopus 로고    scopus 로고
    • Lipid traffic: Floppy drives and a superhighway
    • Holthuis, J. C., and Levine, T. P. (2005) Lipid traffic: floppy drives and a superhighway. Nat. Rev. Mol. Cell Biol. 6, 209-220
    • (2005) Nat. Rev. Mol. Cell Biol , vol.6 , pp. 209-220
    • Holthuis, J.C.1    Levine, T.P.2
  • 46
    • 84893460580 scopus 로고    scopus 로고
    • Early endosome motility spatially organizes polysome distribution
    • Higuchi, Y., Ashwin, P., Roger, Y., and Steinberg, G. (2014) Early endosome motility spatially organizes polysome distribution. J. Cell Biol. 204, 343-357
    • (2014) J. Cell Biol , vol.204 , pp. 343-357
    • Higuchi, Y.1    Ashwin, P.2    Roger, Y.3    Steinberg, G.4
  • 47
    • 84930645698 scopus 로고    scopus 로고
    • A FYVE zinc finger domain protein specifically links mRNA transport to endosome trafficking
    • Pohlmann, T., Baumann, S., Haag, C., Albrecht, M., and Feldbrugge, M. (2015) A FYVE zinc finger domain protein specifically links mRNA transport to endosome trafficking. Elife 4 doi: 10.7554/eLife.06041
    • (2015) Elife , vol.4
    • Pohlmann, T.1    Baumann, S.2    Haag, C.3    Albrecht, M.4    Feldbrugge, M.5
  • 48
    • 84907343347 scopus 로고    scopus 로고
    • Axonally synthesized ATF4 transmits a neurodegenerative signal across brain regions
    • Baleriola, J., Walker, C. A., Jean, Y. Y., Crary, J. F., Troy, C. M., Nagy, P. L., and Hengst, U. (2014) Axonally synthesized ATF4 transmits a neurodegenerative signal across brain regions. Cell 158, 1159-1172
    • (2014) Cell , vol.158 , pp. 1159-1172
    • Baleriola, J.1    Walker, C.A.2    Jean, Y.Y.3    Crary, J.F.4    Troy, C.M.5    Nagy, P.L.6    Hengst, U.7
  • 49
    • 84893639063 scopus 로고    scopus 로고
    • Stuck in traffic: An emerging theme in diseases of the nervous system
    • Neefjes, J., and van der Kant, R. (2014) Stuck in traffic: An emerging theme in diseases of the nervous system. Trends Neurosci. 37, 66-76
    • (2014) Trends Neurosci , vol.37 , pp. 66-76
    • Neefjes, J.1    Van Der Kant, R.2
  • 50
    • 84875813026 scopus 로고    scopus 로고
    • The elusive compass of clostridial neurotoxins: Deciding when and where to go?
    • Bercsenyi, K., Giribaldi, F., and Schiavo, G. (2013) The elusive compass of clostridial neurotoxins: deciding when and where to go? Curr. Top. Microbiol. Immunol. 364, 91-113
    • (2013) Curr. Top. Microbiol. Immunol , vol.364 , pp. 91-113
    • Bercsenyi, K.1    Giribaldi, F.2    Schiavo, G.3
  • 54
    • 65349143637 scopus 로고    scopus 로고
    • Receptor-dependent and-independent axonal retrograde transport of poliovirus in motor neurons
    • Ohka, S., Sakai, M., Bohnert, S., Igarashi, H., Deinhardt, K., Schiavo, G., and Nomoto, A. (2009) Receptor-dependent and-independent axonal retrograde transport of poliovirus in motor neurons. J. Virol. 83, 4995-5004
    • (2009) J. Virol , vol.83 , pp. 4995-5004
    • Ohka, S.1    Sakai, M.2    Bohnert, S.3    Igarashi, H.4    Deinhardt, K.5    Schiavo, G.6    Nomoto, A.7
  • 55
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J., and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372
    • (2008) Nat. Biotechnol , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 56
    • 84860428078 scopus 로고    scopus 로고
    • Endocytic trafficking of neurotrophins in neural development
    • Ascano, M., Bodmer, D., and Kuruvilla, R. (2012) Endocytic trafficking of neurotrophins in neural development. Trends Cell Biol. 22, 266-273
    • (2012) Trends Cell Biol , vol.22 , pp. 266-273
    • Ascano, M.1    Bodmer, D.2    Kuruvilla, R.3
  • 61
    • 77951768486 scopus 로고    scopus 로고
    • Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids
    • Sancak, Y., Bar-Peled, L., Zoncu, R., Markhard, A. L., Nada, S., and Sabatini, D. M. (2010) Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids. Cell 141, 290-303
    • (2011) Cell , vol.141 , pp. 290-303
    • Sancak, Y.1    Bar-Peled, L.2    Zoncu, R.3    Markhard, A.L.4    Nada, S.5    Sabatini, D.M.6
  • 63
    • 84929486075 scopus 로고    scopus 로고
    • The small GTPase Arl8b regulates assembly of the mammalian HOPS complex on lysosomes
    • Khatter, D., Raina, V. B., Dwivedi, D., Sindhwani, A., Bahl, S., and Sharma, M. (2015) The small GTPase Arl8b regulates assembly of the mammalian HOPS complex on lysosomes. J. Cell Sci. 128, 1746-1761
    • (2015) J. Cell Sci , vol.128 , pp. 1746-1761
    • Khatter, D.1    Raina, V.B.2    Dwivedi, D.3    Sindhwani, A.4    Bahl, S.5    Sharma, M.6
  • 66
    • 34249785986 scopus 로고    scopus 로고
    • Functional effects of coxsackievirus and adenovirus receptor glycosylation on homophilic adhesion and adenoviral infection
    • Excoffon, K. J., Gansemer, N., Traver, G., and Zabner, J. (2007) Functional effects of coxsackievirus and adenovirus receptor glycosylation on homophilic adhesion and adenoviral infection. J. Virol. 81, 5573-5578
    • (2007) J. Virol , vol.81 , pp. 5573-5578
    • Excoffon, K.J.1    Gansemer, N.2    Traver, G.3    Zabner, J.4
  • 67
    • 73949125038 scopus 로고    scopus 로고
    • Retrograde axon transport of herpes simplex virus and pseudorabies virus: A live-cell comparative analysis
    • Antinone, S. E., and Smith, G. A. (2010) Retrograde axon transport of herpes simplex virus and pseudorabies virus: A live-cell comparative analysis. J. Virol. 84, 1504-1512
    • (2011) J. Virol , vol.84 , pp. 1504-1512
    • Antinone, S.E.1    Smith, G.A.2
  • 69
    • 34548191213 scopus 로고    scopus 로고
    • Retrograde axonal transport: A major transmission route of enterovirus 71 in mice
    • Chen, C. S., Yao, Y. C., Lin, S. C., Lee, Y. P., Wang, Y. F., Wang, J. R., Liu, C. C., Lei, H. Y., and Yu, C. K. (2007) Retrograde axonal transport: A major transmission route of enterovirus 71 in mice. J. Virol. 81, 8996-9003
    • (2007) J. Virol , vol.81 , pp. 8996-9003
    • Chen, C.S.1    Yao, Y.C.2    Lin, S.C.3    Lee, Y.P.4    Wang, Y.F.5    Wang, J.R.6    Liu, C.C.7    Lei, H.Y.8    Yu, C.K.9


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