-
1
-
-
84861832244
-
Label-free quantitative LC-MS proteomics of Alzheimer's disease and normally aged human brains
-
Andreev VP, Petyuk VA, Brewer HM, Karpievitch YV, Xie F, Clarke J, Camp D, Smith RD, Lieberman AP, Albin RL, Nawaz Z, El Hokayem J, Myers AJ (2012) Label-free quantitative LC-MS proteomics of Alzheimer's disease and normally aged human brains. J Proteome Res 11(6):3053-3067
-
(2012)
J Proteome Res
, vol.11
, Issue.6
, pp. 3053-3067
-
-
Andreev, V.P.1
Petyuk, V.A.2
Brewer, H.M.3
Karpievitch, Y.V.4
Xie, F.5
Clarke, J.6
Camp, D.7
Smith, R.D.8
Lieberman, A.P.9
Albin, R.L.10
Nawaz, Z.11
El Hokayem, J.12
Myers, A.J.13
-
2
-
-
84858338665
-
BDNF Val66Met impairs fluoxetine-induced enhancement of adult hippocampus plasticity
-
Bath KG, Jing DQ, Dincheva I, Neeb CC, Pattwell SS, Chao MV, Lee FS, Ninan I (2012) BDNF Val66Met impairs fluoxetine-induced enhancement of adult hippocampus plasticity. Neuropsychopharmacology 37:1297-1304
-
(2012)
Neuropsychopharmacology
, vol.37
, pp. 1297-1304
-
-
Bath, K.G.1
Jing, D.Q.2
Dincheva, I.3
Neeb, C.C.4
Pattwell, S.S.5
Chao, M.V.6
Lee, F.S.7
Ninan, I.8
-
4
-
-
84892633789
-
Antipsychotics activate mTORC1-dependent translation to enhance neuronal morphological complexity
-
Bowling H, Zhang G, Bhattacharya A, Pérez-Cuesta LM, Deinhardt K, Hoeffer CA, Neubert TA, Gan WB, Klann E, Chao MV (2014) Antipsychotics activate mTORC1-dependent translation to enhance neuronal morphological complexity. Sci Signal 7(308):ra4
-
(2014)
Sci Signal
, vol.7
, Issue.308
, pp. 4
-
-
Bowling, H.1
Zhang, G.2
Bhattacharya, A.3
Pérez-Cuesta, L.M.4
Deinhardt, K.5
Hoeffer, C.A.6
Neubert, T.A.7
Gan, W.B.8
Klann, E.9
Chao, M.V.10
-
5
-
-
84874285978
-
In vivo quantitative proteomics of somatosensory cortical synapses shows which protein levels are modulated by sensory deprivation
-
Butko MT, Savas JN, Friedman B, Delahunty C, Ebner F, Yates JR III, Tsien RY (2013) In vivo quantitative proteomics of somatosensory cortical synapses shows which protein levels are modulated by sensory deprivation. Proc Natl Acad Sci U S A 110:E726-E735
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E726-E735
-
-
Butko, M.T.1
Savas, J.N.2
Friedman, B.3
Delahunty, C.4
Ebner, F.5
Yates, J.R.6
Tsien, R.Y.7
-
6
-
-
81755169872
-
Evidence for disease and antipsychotic medication effects in post-mortem brain from schizophrenia patients
-
Chan MK, Tsang TM, Harris LW, Guest PC, Holmes E, Bahn S (2011) Evidence for disease and antipsychotic medication effects in post-mortem brain from schizophrenia patients. Mol Psychiatry 16:1189-1202
-
(2011)
Mol Psychiatry
, vol.16
, pp. 1189-1202
-
-
Chan, M.K.1
Tsang, T.M.2
Harris, L.W.3
Guest, P.C.4
Holmes, E.5
Bahn, S.6
-
7
-
-
0037012101
-
Neurotrophins: To cleave or not to cleave
-
Chao MV, Bothwell M (2002) Neurotrophins: to cleave or not to cleave. Neuron 33:9-12
-
(2002)
Neuron
, vol.33
, pp. 9-12
-
-
Chao, M.V.1
Bothwell, M.2
-
8
-
-
0004831102
-
Purification and properties of a nerve growth-promoting factor isolated from mouse sarcoma 180
-
Cohen S, Levi-Montalcini R (1957) Purification and properties of a nerve growth-promoting factor isolated from mouse sarcoma 180. Cancer Res 17:15-20
-
(1957)
Cancer Res
, vol.17
, pp. 15-20
-
-
Cohen, S.1
Levi-Montalcini, R.2
-
9
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox J, Mann M (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26:1367-1372
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
10
-
-
84862680862
-
Proteomic analysis of wild-type and mutant huntingtin-associated proteins in mouse brains identifies unique interactions and involvement in protein synthesis
-
Culver BP, Savas JN, Park SK, Choi JH, Zheng S, Zeitlin SO, Yates JR III, Tanese N (2012) Proteomic analysis of wild-type and mutant huntingtin-associated proteins in mouse brains identifies unique interactions and involvement in protein synthesis. J Biol Chem 287: 21599-21614
-
(2012)
J Biol Chem
, vol.287
, pp. 21599-21614
-
-
Culver, B.P.1
Savas, J.N.2
Park, S.K.3
Choi, J.H.4
Zheng, S.5
Zeitlin, S.O.6
Yates, J.R.7
Tanese, N.8
-
11
-
-
81855192712
-
Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry
-
Darie CC, Deinhardt K, Zhang G, Cardasis HS, Chao MV, Neubert TA (2011) Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry. Proteomics 11:4514-4528
-
(2011)
Proteomics
, vol.11
, pp. 4514-4528
-
-
Darie, C.C.1
Deinhardt, K.2
Zhang, G.3
Cardasis, H.S.4
Chao, M.V.5
Neubert, T.A.6
-
13
-
-
84890427779
-
Shaping neurons: Long and short range effects of mature and proBDNF signalling upon neuronal structure
-
Deinhardt K, Chao MV (2014) Shaping neurons: long and short range effects of mature and proBDNF signalling upon neuronal structure. Neuropharmacology 76:603-609
-
(2014)
Neuropharmacology
, vol.76
, pp. 603-609
-
-
Deinhardt, K.1
Chao, M.V.2
-
14
-
-
84926352545
-
More than just an off-switch: The essential role of protein dephosphorylation in the modulation of BDNF signaling events
-
Huang C (ed), Rijeka, InTech
-
Deinhardt K, Jeanneteau F (2012) More than just an off-switch: the essential role of protein dephosphorylation in the modulation of BDNF signaling events. In: Huang C (ed) Protein phosphorylation in human health. Rijeka, InTech, pp 217-232
-
(2012)
Protein phosphorylation in human health
, pp. 217-232
-
-
Deinhardt, K.1
Jeanneteau, F.2
-
15
-
-
83155175604
-
Neuronal growth cone retraction relies on proneurotrophin receptor signaling through Rac
-
Deinhardt K, Kim T, Spellman DS, Mains RE, Eipper BA, Neubert TA, Chao MV, Hempstead BL (2011) Neuronal growth cone retraction relies on proneurotrophin receptor signaling through Rac. Sci Signal 4:ra82
-
(2011)
Sci Signal
, vol.4
, pp. 82
-
-
Deinhardt, K.1
Kim, T.2
Spellman, D.S.3
Mains, R.E.4
Eipper, B.A.5
Neubert, T.A.6
Chao, M.V.7
Hempstead, B.L.8
-
16
-
-
77954095160
-
In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons
-
Dieterich DC, Hodas JJ, Gouzer G, Shadrin IY, Ngo JT, Triller A, Tirrell DA, Schuman EM (2010) In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons. Nat Neurosci 13:897-905
-
(2010)
Nat Neurosci
, vol.13
, pp. 897-905
-
-
Dieterich, D.C.1
Hodas, J.J.2
Gouzer, G.3
Shadrin, I.Y.4
Ngo, J.T.5
Triller, A.6
Tirrell, D.A.7
Schuman, E.M.8
-
17
-
-
33745464039
-
Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)
-
Dieterich DC, Link AJ, Graumann J, Tirrell DA, Schuman EM (2006) Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT). Proc Natl Acad Sci U S A 103:9482-9487
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 9482-9487
-
-
Dieterich, D.C.1
Link, A.J.2
Graumann, J.3
Tirrell, D.A.4
Schuman, E.M.5
-
18
-
-
0027959270
-
Protein synthesis in long-term stationaryphase cultures of Saccharomyces cerevisiae
-
Fuge EK, Braun EL, Werner-Washburne M (1994) Protein synthesis in long-term stationaryphase cultures of Saccharomyces cerevisiae. J Bacteriol 176:5802-5813
-
(1994)
J Bacteriol
, vol.176
, pp. 5802-5813
-
-
Fuge, E.K.1
Braun, E.L.2
Werner-Washburne, M.3
-
19
-
-
79961141696
-
Recruitment of actin modifiers to TrkA endosomes governs retrograde NGF signaling and survival
-
Harrington AW, St Hillaire C, Zweifel LS, Glebova NO, Philippidou P, Halegoua S, Ginty DD (2011) Recruitment of actin modifiers to TrkA endosomes governs retrograde NGF signaling and survival. Cell 146:421-434
-
(2011)
Cell
, vol.146
, pp. 421-434
-
-
Harrington, A.W.1
St Hillaire, C.2
Zweifel, L.S.3
Glebova, N.O.4
Philippidou, P.5
Halegoua, S.6
Ginty, D.D.7
-
20
-
-
84875755186
-
QuaNCAT: Quantitating proteome dynamics in primary cells
-
Howden AJ, Geoghegan V, Katsch K, Efstathiou G, Bhushan B, Boutureira O, Thomas B, Trudgian DC, Kessler BM, Dieterich DC, Davis BG, Acuto O (2013) QuaNCAT: quantitating proteome dynamics in primary cells. Nat Methods 10(4):343-346
-
(2013)
Nat Methods
, vol.10
, Issue.4
, pp. 343-346
-
-
Howden, A.J.1
Geoghegan, V.2
Katsch, K.3
Efstathiou, G.4
Bhushan, B.5
Boutureira, O.6
Thomas, B.7
Trudgian, D.C.8
Kessler, B.M.9
Dieterich, D.C.10
Davis, B.G.11
Acuto, O.12
-
21
-
-
33947586766
-
BDNF induces widespread changes in synaptic protein content and up-regulates components of the translation machinery: An analysis using high-throughput proteomics
-
Liao L, Pilotte J, Xu T, Wong CC, Edelman GM, Vanderklish P, Yates JR III (2007) BDNF induces widespread changes in synaptic protein content and up-regulates components of the translation machinery: an analysis using high-throughput proteomics. J Proteome Res 6:1059-1071
-
(2007)
J Proteome Res
, vol.6
, pp. 1059-1071
-
-
Liao, L.1
Pilotte, J.2
Xu, T.3
Wong, C.C.4
Edelman, G.M.5
Vanderklish, P.6
Yates, J.R.7
-
22
-
-
23044488902
-
The yin and yang of neurotrophin action
-
Lu B, Pang PT, Woo NH (2005) The yin and yang of neurotrophin action. Nat Rev Neurosci 6:603-614
-
(2005)
Nat Rev Neurosci
, vol.6
, pp. 603-614
-
-
Lu, B.1
Pang, P.T.2
Woo, N.H.3
-
23
-
-
67650354396
-
Antipsychotic treatment alters protein expression associated with presynaptic function and nervous system development in rat frontal cortex
-
Ma D, Chan MK, Lockstone HE, Pietsch SR, Jones DN, Cilia J, Hill MD, Robbins MJ, Benzel IM, Umrania Y, Guest PC, Levin Y, Maycox PR, Bahn S (2009) Antipsychotic treatment alters protein expression associated with presynaptic function and nervous system development in rat frontal cortex. J Proteome Res 8:3284-3297
-
(2009)
J Proteome Res
, vol.8
, pp. 3284-3297
-
-
Ma, D.1
Chan, M.K.2
Lockstone, H.E.3
Pietsch, S.R.4
Jones, D.N.5
Cilia, J.6
Hill, M.D.7
Robbins, M.J.8
Benzel, I.M.9
Umrania, Y.10
Guest, P.C.11
Levin, Y.12
Maycox, P.R.13
Bahn, S.14
-
24
-
-
70349976976
-
BDNF-induced changes in the expression of the translation machinery in hippocampal neurons: Protein levels and dendritic mRNA
-
Manadas B, Santos AR, Szabadfi K, Gomes JR, Garbis SD, Fountoulakis M, Duarte CB (2009) BDNF-induced changes in the expression of the translation machinery in hippocampal neurons: protein levels and dendritic mRNA. J Proteome Res 8:4536-4552
-
(2009)
J Proteome Res
, vol.8
, pp. 4536-4552
-
-
Manadas, B.1
Santos, A.R.2
Szabadfi, K.3
Gomes, J.R.4
Garbis, S.D.5
Fountoulakis, M.6
Duarte, C.B.7
-
25
-
-
0028872649
-
Specificity of receptor tyrosine kinase signaling: Transient versus sustained extracellular signal-regulated kinase activation
-
Marshall CJ (1995) Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-regulated kinase activation. Cell 80:179-185
-
(1995)
Cell
, vol.80
, pp. 179-185
-
-
Marshall, C.J.1
-
26
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mole Cell Proteomics 1(5):376-386
-
(2002)
Mole Cell Proteomics
, vol.1
, Issue.5
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
27
-
-
84871408179
-
Neurotrophin regulation of neural circuit development and function
-
Park H, Poo MM (2013) Neurotrophin regulation of neural circuit development and function. Nat Rev Neurosci 14:7-23
-
(2013)
Nat Rev Neurosci
, vol.14
, pp. 7-23
-
-
Park, H.1
Poo, M.M.2
-
28
-
-
41549117597
-
A quantitative analysis software tool for mass spectrometry-based proteomics
-
Park SK, Venable JD, Xu T, Yates JR III (2008) A quantitative analysis software tool for mass spectrometry-based proteomics. Nat Methods 5:319-322
-
(2008)
Nat Methods
, vol.5
, pp. 319-322
-
-
Park, S.K.1
Venable, J.D.2
Xu, T.3
Yates, J.R.4
-
29
-
-
84864139924
-
SILAC for the study of mammalian cell lines and yeast protein complexes
-
Piechura H, Oeljeklaus S, Warscheid B (2012) SILAC for the study of mammalian cell lines and yeast protein complexes. Methods Mol Biol 893:201-221
-
(2012)
Methods Mol Biol
, vol.893
, pp. 201-221
-
-
Piechura, H.1
Oeljeklaus, S.2
Warscheid, B.3
-
30
-
-
0035253411
-
Cell-cycle-dependent translational control
-
Pyronnet S, Sonenberg N (2001) Cell-cycle-dependent translational control. Curr Opin Genet Dev 11:13-18
-
(2001)
Curr Opin Genet Dev
, vol.11
, pp. 13-18
-
-
Pyronnet, S.1
Sonenberg, N.2
-
31
-
-
84855432972
-
Dysregulated mTORC1-dependent translational control: From brain disorders to psychoactive drugs
-
Santini E, Klann E (2011) Dysregulated mTORC1-dependent translational control: from brain disorders to psychoactive drugs. Front Behav Neurosci 5:76
-
(2011)
Front Behav Neurosci
, vol.5
, pp. 76
-
-
Santini, E.1
Klann, E.2
-
32
-
-
63949084607
-
SUnSET, a nonradioactive method to monitor protein synthesis
-
Schmidt EK, Clavarino G, Ceppi M, Pierre P (2009) SUnSET, a nonradioactive method to monitor protein synthesis. Nat Methods 6:275-277
-
(2009)
Nat Methods
, vol.6
, pp. 275-277
-
-
Schmidt, E.K.1
Clavarino, G.2
Ceppi, M.3
Pierre, P.4
-
33
-
-
84889021354
-
Integrated analysis of the Wnt responsive proteome in human cells reveals diverse and cell-type specific networks
-
Song J, Wang Z, Ewing RM (2013) Integrated analysis of the Wnt responsive proteome in human cells reveals diverse and cell-type specific networks. Mol Biosyst 10:45-53
-
(2013)
Mol Biosyst
, vol.10
, pp. 45-53
-
-
Song, J.1
Wang, Z.2
Ewing, R.M.3
-
34
-
-
45749144385
-
Stable isotopic labeling by amino acids in cultured primary neurons: Application to brain-derived neurotrophic factordependent phosphotyrosine-associated signaling
-
Spellman DS, Deinhardt K, Darie CC, Chao MV, Neubert TA (2008) Stable isotopic labeling by amino acids in cultured primary neurons: application to brain-derived neurotrophic factordependent phosphotyrosine-associated signaling. Mol Cell Proteomics 7:1067-1076
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1067-1076
-
-
Spellman, D.S.1
Deinhardt, K.2
Darie, C.C.3
Chao, M.V.4
Neubert, T.A.5
-
35
-
-
33750805030
-
Molecular anatomy of a trafficking organelle
-
Takamori S, Holt M, Stenius K, Lemke EA, Gronborg M, Riedel D, Urlaub H, Schenck S, Brugger B, Ringler P, Muller SA, Rammner B, Grater F, Hub JS, De Groot BL, Mieskes G, Moriyama Y, Klingauf J, Grubmuller H, Heuser J, Wieland F, Jahn R (2006) Molecular anatomy of a trafficking organelle. Cell 127:831-846
-
(2006)
Cell
, vol.127
, pp. 831-846
-
-
Takamori, S.1
Holt, M.2
Stenius, K.3
Lemke, E.A.4
Gronborg, M.5
Riedel, D.6
Urlaub, H.7
Schenck, S.8
Brugger, B.9
Ringler, P.10
Muller, S.A.11
Rammner, B.12
Grater, F.13
Hub, J.S.14
De Groot, B.L.15
Mieskes, G.16
Moriyama, Y.17
Klingauf, J.18
Grubmuller, H.19
Heuser, J.20
Wieland, F.21
Jahn, R.22
more..
-
36
-
-
77949729496
-
Understanding proneurotrophin actions: Recent advances and challenges
-
Teng KK, Felice S, Kim T, Hempstead BL (2010) Understanding proneurotrophin actions: recent advances and challenges. Dev Neurobiol 70:350-359
-
(2010)
Dev Neurobiol
, vol.70
, pp. 350-359
-
-
Teng, K.K.1
Felice, S.2
Kim, T.3
Hempstead, B.L.4
-
37
-
-
1642540257
-
Neurotrophins and their receptors: Signaling trios in complex biological systems
-
Teng KK, Hempstead BL (2004) Neurotrophins and their receptors: signaling trios in complex biological systems. Cell Mol Life Sci 61:35-48
-
(2004)
Cell Mol Life Sci
, vol.61
, pp. 35-48
-
-
Teng, K.K.1
Hempstead, B.L.2
-
38
-
-
0037454346
-
Bioconjugation by copper(I)-catalyzed azide-alkyne [3 + 2] cycloaddition
-
Wang Q, Chan TR, Hilgraf R, Fokin VV, Sharpless KB, Finn MG (2003) Bioconjugation by copper(I)-catalyzed azide-alkyne [3 + 2] cycloaddition. J Am Chem Soc 125:3192-3193
-
(2003)
J Am Chem Soc
, vol.125
, pp. 3192-3193
-
-
Wang, Q.1
Chan, T.R.2
Hilgraf, R.3
Fokin, V.V.4
Sharpless, K.B.5
Finn, M.G.6
-
39
-
-
20044371655
-
A proteomic survey of rat cerebral cortical synaptosomes
-
Witzmann FA, Arnold RJ, Bai F, Hrncirova P, Kimpel MW, Mechref YS, McBride WJ, Novotny MV, Pedrick NM, Ringham HN, Simon JR (2005) A proteomic survey of rat cerebral cortical synaptosomes. Proteomics 5:2177-2201
-
(2005)
Proteomics
, vol.5
, pp. 2177-2201
-
-
Witzmann, F.A.1
Arnold, R.J.2
Bai, F.3
Hrncirova, P.4
Kimpel, M.W.5
Mechref, Y.S.6
McBride, W.J.7
Novotny, M.V.8
Pedrick, N.M.9
Ringham, H.N.10
Simon, J.R.11
-
40
-
-
79955791663
-
Study of neurotrophin-3 signaling in primary cultured neurons using multiplex stable isotope labeling with amino acids in cell culture
-
Zhang G, Deinhardt K, Chao MV, Neubert TA (2011) Study of neurotrophin-3 signaling in primary cultured neurons using multiplex stable isotope labeling with amino acids in cell culture. J Proteome Res 10:2546-2554
-
(2011)
J Proteome Res
, vol.10
, pp. 2546-2554
-
-
Zhang, G.1
Deinhardt, K.2
Chao, M.V.3
Neubert, T.A.4
-
41
-
-
65349131823
-
Use of stable isotope labeling by amino acids in cell culture (SILAC) for phosphotyrosine protein identification and quantitation
-
Zhang G, Neubert TA (2009) Use of stable isotope labeling by amino acids in cell culture (SILAC) for phosphotyrosine protein identification and quantitation. Methods Mol Biol 527:79-92
-
(2009)
Methods Mol Biol
, vol.527
, pp. 79-92
-
-
Zhang, G.1
Neubert, T.A.2
|