On-Chip Mesoporous Functionalized Magnetic Microspheres for Protein Sequencing by Extended Bottom-up Mass Spectrometry

Analytical Chemistry

Volumn 88, Issue 3, 2016, Pages 1775-1784

  Gasilova, Natalia ^a   Srzentić, Kristina ^a   Qiao, Liang ^a   Liu, Baohong ^b   Beck, Alain ^c   Tsybin, Yury O ^a   Girault, Hubert H ^a  

^a EPFL   (Switzerland)

^b FUDAN UNIVERSITY   (China)

^c Centre d'Immunologie Pierre Fabre   (France)

Author keywords

[No Author keywords available]

Indexed keywords

COST EFFECTIVENESS; EFFLUENT TREATMENT; GEMS; MAGNETISM; MASS SPECTROMETRY; MICROSPHERES; MIXTURES; MONOCLONAL ANTIBODIES; PEPTIDES; PHASE SEPARATION; PROTEINS; PURIFICATION; SORPTION; SPECTROMETRY;

ANALYTE PRECONCENTRATION; APPLIED MAGNETIC FIELDS; COMPLEMENTARITY-DETERMINING REGIONS; HEAVY AND LIGHT CHAINS; HIGH-THROUGHPUT SEQUENCING; ON-LINE SAMPLE PRECONCENTRATION; SOLID-PHASE EXTRACTION; TANDEM MASS SPECTROMETRY;

ANTIBODIES;

MAGNETITE NANOPARTICLE; MICROSPHERE; PEPTIDE; SILICON DIOXIDE;

CHEMISTRY; MAGNETIC FIELD; PARTICLE SIZE; POROSITY; PROCEDURES; PROTEOMICS; SEQUENCE ANALYSIS; SOLID PHASE EXTRACTION; SURFACE PROPERTY; TANDEM MASS SPECTROMETRY;

MAGNETIC FIELDS; MAGNETITE NANOPARTICLES; MICROSPHERES; PARTICLE SIZE; PEPTIDES; POROSITY; PROTEOMICS; SEQUENCE ANALYSIS, PROTEIN; SILICON DIOXIDE; SOLID PHASE EXTRACTION; SURFACE PROPERTIES; TANDEM MASS SPECTROMETRY;

EID: 84957547809     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/acs.analchem.5b04045     Document Type: Article

References (41)

1. Selvaraju, S.; Rassi, Z. El. Electrophoresis 2012, 33, 74-88 10.1002/elps.201100431
2. Li, X.-S.; Zhu, G.-T.; Luo, Y.-B.; Yuan, B.-F.; Feng, Y.-Q. TrAC, Trends Anal. Chem. 2013, 45, 233-247 10.1016/j.trac.2012.10.015
3. Xie, L.; Jiang, R.; Zhu, F.; Liu, H.; Ouyang, G. Anal. Bioanal. Chem. 2014, 406, 377-399 10.1007/s00216-013-7302-6
4. Bland, C.; Bellanger, L.; Armengaud, J. J. Proteome Res. 2014, 13, 668-680 10.1021/pr400774z
5. Ji, L.; Wu, J.-H.; Luo, Q.; Li, X.; Zheng, W.; Zhai, G.; Wang, F.; Lu, S.; Feng, Y.-Q.; Liu, J.; Xiong, S. Anal. Chem. 2012, 84, 2284-2291 10.1021/ac202897u
6. Tan, F.; Zhang, Y.; Mi, W.; Wang, J.; Wei, J.; Cai, Y.; Qian, X. J. Proteome Res. 2008, 7, 1078-1087 10.1021/pr700655d
7. Loo, D.; Jones, A.; Hill, M. M. J. Proteome Res. 2010, 9, 5496-5500 10.1021/pr100472z
8. Zhao, M.; Xie, Y.; Deng, C.; Zhang, X. J. Chromatogr. A 2014, 1357, 182-193 10.1016/j.chroma.2014.04.078
9. Chen, L.; Wang, T.; Tong, J. TrAC, Trends Anal. Chem. 2011, 30, 1095-1108 10.1016/j.trac.2011.02.013
10. Lin, J.-H.; Wu, Z.-H.; Tseng, W.-L. Anal. Methods 2010, 2, 1874-2056 10.1039/c0ay00575d
11. Baumann, S.; Ceglarek, U.; Fiedler, G. M.; Lembcke, J.; Leichtle, A.; Thiery, J. Clin. Chem. 2005, 51, 973-980 10.1373/clinchem.2004.047308
12. Yao, N.; Chen, H.; Lin, H.; Deng, C.; Zhang, X. J. Chromatogr. A 2008, 1185, 93-101 10.1016/j.chroma.2008.01.047
13. Chen, H.; Liu, S.; Li, Y.; Deng, C.; Zhang, X.; Yang, P. Proteomics 2011, 11, 890-897 10.1002/pmic.201000509
14. Han, E. C.; Lee, Y.-S.; Liu, Y.-C.; Liao, H.-Y.; Liao, W.-S.; Lai, H.-C.; Peng, C.-Y.; Jeng, L.-B. Clin. Chim. Acta 2011, 412, 2174-2182 10.1016/j.cca.2011.08.011
15. De Noo, M. E.; Tollenaar, R. A. E. M.; Özalp, A.; Kuppen, P. J. K.; Bladergroeen, M. R.; Eilers, P. H. C.; Deelder, A. M. Anal. Chem. 2005, 77, 7232-7241 10.1021/ac050571f
16. Chen, H.; Xu, X.; Yao, N.; Deng, C.; Li, Y.; Yang, P.; Zhang, X. Proteomics 2008, 8, 2778-2784 10.1002/pmic.200700892
17. Chen, H.; Deng, C.; Li, Y.; Dai, Y.; Yang, P.; Zhang, X. Adv. Mater. 2009, 21, 2200-2205 10.1002/adma.200802260
18. Sun, L.; Zhao, Q.; Zhu, G.; Zhou, Y.; Wang, T.; Schan, Y.; Yang, K.; Liang, Z.; Zhang, L.; Zhang, Y. Rapid Commun. Mass Spectrom. 2011, 25, 1257-1265 10.1002/rcm.4986
19. Liu, S.; Li, Y.; Deng, C.; Mao, Y.; Zhang, X.; Yang, P. Proteomics 2011, 11, 4503-4513 10.1002/pmic.201100101
20. Zhao, L.; Qin, H.; Wu, R.; Zou, H. J. Chromatogr. A 2012, 1228, 193-204 10.1016/j.chroma.2011.09.051
21. Jonker, N.; Kretschmer, A.; Kool, J.; Fernandez, A.; Kloos, D.; Krabbe, J. G.; Lingeman, H.; Irth, H. Anal. Chem. 2009, 81, 4263-4270 10.1021/ac9000755
22. Ramautar, R.; de Jong, G. J.; Somsen, G. W. Electrophoresis 2012, 33, 243-250 10.1002/elps.201100453
23. Ramautar, R.; Somsen, G. W.; de Jong, G. J. Electrophoresis 2014, 35, 128-137 10.1002/elps.201300335
24. Laskay, Ü. A.; Lobas, A. A.; Srzentić, K.; Gorshkov, M. V.; Tsybin, Y. O. J. Proteome Res. 2013, 12, 5558-5569 10.1021/pr400522h
25. Laskay, Ü. A.; Srzentić, K.; Monod, M.; Tsybin, Y. O. J. Proteomics 2014, 110, 20-31 10.1016/j.jprot.2014.07.035
26. Gasilova, N.; Qiao, L.; Momotenko, D.; Pourhaghighi, M. R.; Girault, H. H. Anal. Chem. 2013, 85, 6254-6263 10.1021/ac400171e
27. Srzentic, K.; Fornelli, L.; Laskay, Ü. A.; Monod, M.; Beck, A.; Ayoub, D.; Tsybin, Y. O. Anal. Chem. 2014, 86, 9945-9953 10.1021/ac502766n
28. Albrecht, A.; Felk, A.; Pichova, I.; Naglik, J. R.; Schaller, M.; De Groot, P.; MacCallum, D.; Odds, F. C.; Schäfer, W.; Klis, F.; Monod, M.; Hube, B. J. Biol. Chem. 2006, 281, 688-694 10.1074/jbc.M509297200
29. Deutsch, E. W.; Mendoza, L.; Shteynberg, D.; Farrah, T.; Lam, H.; Tasman, N.; Sun, Z.; Nilsson, E.; Pratt, B.; Prazen, B.; Eng, J. K.; Martin, D. B.; Nesvizhskii, A. I.; Aebersold, R. Proteomics 2010, 10, 1150-1159 10.1002/pmic.200900375
30. Second, T. P.; Blethrow, J. D.; Schwartz, J. C.; Merrihew, G. E.; Maccoss, M. J.; Swaney, D. L.; Russell, J. D.; Coon, J. J.; Zabrouskov, V. Anal. Chem. 2009, 81, 7757-7765 10.1021/ac901278y
31. Chen, H.; Liu, S.; Yang, H.; Mao, Y.; Deng, C.; Zhang, X.; Yang, P. Proteomics 2010, 10, 930-939 10.1002/pmic.200900553
32. Pelzing, M.; Neusüß, C. Electrophoresis 2005, 26, 2717-2728 10.1002/elps.200410424
33. Noga, M.; Sucharski, F.; Suder, P.; Silberring, J. J. Sep. Sci. 2007, 30, 2179-2189 10.1002/jssc.200700225
34. Freeke, J.; Barattini, V.; Sneekes, E.-J.; Milton, D.; Adams, S.; Swart, R.; Pereira, L. (2011. http://www.thermoscientific.com/content/dam/tfs/ATG/CMD/CMD%20Documents/posters/PO-PSCCS-1211-0811-Development-Reliability-Testing-Protocols-EN.pdf (accessed Jan 1, 2016).
35. Liu, Q.; Cobb, J. S.; Johnson, J. L.; Wang, Q.; Agar, J. N. J. Chromatogr. Sci. 2014) 52, 120-127 10.1093/chromsci/bms255
36. Winter, D.; Pipkorn, R.; Lehmann, W. D. J. Sep. Sci. 2009, 32, 1111-1119 10.1002/jssc.200800691
37. Rozenbrand, J.; de Jong, G.; van Bennekom, W. P. J. Sep. Sci. 2011, 34, 2199-2205 10.1002/jssc.201100151
38. Manuilov, A. V.; Radziejewski, C. H.; Lee, D. H. mAbs 2011, 3, 387-395 10.4161/mabs.3.4.16237
39. Ayoub, D.; Jabs, W.; Resemann, A.; Evers, W.; Evans, C.; Main, L.; Baessmann, C.; Wagner-Rousset, E.; Suckau, D.; Beck, A. mAbs 2013, 5, 699-710 10.4161/mabs.25423
40. Diepold, K.; Bomans, K.; Wiedmann, M.; Zimmermann, B.; Petzold, A.; Schlothauer, T.; Mueller, R.; Moritz, B.; Stracke, J. O.; Molhoj, M.; Reusch, D.; Bulau, P. PLoS One 2012, 7, e30295 10.1371/journal.pone.0030295
41. Scheltema, R. A.; Hauschild, J.-P.; Lange, O.; Hornburg, D.; Denisov, E.; Damoc, E.; Kuehn, A.; Makarov, A.; Mann, M. Mol. Cell. Proteomics 2014, 13, 3698-3708 10.1074/mcp.M114.043489