메뉴 건너뛰기




Volumn 13, Issue 2, 2014, Pages 668-680

Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides

Author keywords

genome annotation; high throughput proteomics; N terminomics; protein derivatization; proteogenomics; tandem mass spectrometry

Indexed keywords

ANIMALS; ANTIBODIES, MONOCLONAL; BICYCLO COMPOUNDS, HETEROCYCLIC; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; ENZYME-LINKED IMMUNOSORBENT ASSAY; IMMUNOMAGNETIC SEPARATION; MICE; MICE, INBRED BALB C; PEPTIDES; TANDEM MASS SPECTROMETRY;

EID: 84893870655     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr400774z     Document Type: Article
Times cited : (34)

References (34)
  • 1
    • 84885072320 scopus 로고    scopus 로고
    • Proteogenomics for environmental microbiology
    • Armengaud, J.; Hartmann, E. M.; Bland, C. Proteogenomics for environmental microbiology Proteomics 2013, 13, 2731-2742
    • (2013) Proteomics , vol.13 , pp. 2731-2742
    • Armengaud, J.1    Hartmann, E.M.2    Bland, C.3
  • 4
    • 84857502685 scopus 로고    scopus 로고
    • Statistics of N-terminal alignment as a guide for refining prokaryotic gene annotation
    • Sato, N.; Tajima, N. Statistics of N-terminal alignment as a guide for refining prokaryotic gene annotation Genomics 2012, 99 (3) 138-143
    • (2012) Genomics , vol.99 , Issue.3 , pp. 138-143
    • Sato, N.1    Tajima, N.2
  • 5
    • 84871939078 scopus 로고    scopus 로고
    • Microbiology and proteomics, getting the best of both worlds!
    • Armengaud, J. Microbiology and proteomics, getting the best of both worlds! Environ. Microbiol. 2013, 15 (1) 12-23
    • (2013) Environ. Microbiol. , vol.15 , Issue.1 , pp. 12-23
    • Armengaud, J.1
  • 6
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H.; Sadygov, R. G.; Yates, J. R., 3rd. A model for random sampling and estimation of relative protein abundance in shotgun proteomics Anal. Chem. 2004, 76 (14) 4193-4201
    • (2004) Anal. Chem. , vol.76 , Issue.14 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 7
    • 66349116973 scopus 로고    scopus 로고
    • A perfect genome annotation is within reach with the proteomics and genomics alliance
    • Armengaud, J. A perfect genome annotation is within reach with the proteomics and genomics alliance Curr. Opin. Microbiol. 2009, 12 (3) 292-300
    • (2009) Curr. Opin. Microbiol. , vol.12 , Issue.3 , pp. 292-300
    • Armengaud, J.1
  • 8
    • 34248637584 scopus 로고    scopus 로고
    • Positional proteomics: Preparation of amino-terminal peptides as a strategy for proteome simplification and characterization
    • McDonald, L.; Beynon, R. J. Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization Nat. Prot. 2006, 1 (4) 1790-1798
    • (2006) Nat. Prot. , vol.1 , Issue.4 , pp. 1790-1798
    • McDonald, L.1    Beynon, R.J.2
  • 9
    • 30944438540 scopus 로고    scopus 로고
    • Positional proteomics: Selective recovery and analysis of N-terminal proteolytic peptides
    • McDonald, L.; Robertson, D. H.; Hurst, J. L.; Beynon, R. J. Positional proteomics: selective recovery and analysis of N-terminal proteolytic peptides Nat. Methods 2005, 2 (12) 955-957
    • (2005) Nat. Methods , vol.2 , Issue.12 , pp. 955-957
    • McDonald, L.1    Robertson, D.H.2    Hurst, J.L.3    Beynon, R.J.4
  • 10
    • 37249092935 scopus 로고    scopus 로고
    • Dimethyl isotope-coded affinity selection for the analysis of free and blocked N-termini of proteins using LC-MS/MS
    • Shen, P. T.; Hsu, J. L.; Chen, S. H. Dimethyl isotope-coded affinity selection for the analysis of free and blocked N-termini of proteins using LC-MS/MS Anal. Chem. 2007, 79 (24) 9520-9530
    • (2007) Anal. Chem. , vol.79 , Issue.24 , pp. 9520-9530
    • Shen, P.T.1    Hsu, J.L.2    Chen, S.H.3
  • 11
    • 77954292273 scopus 로고    scopus 로고
    • Efficient and clean charge derivatization of peptides for analysis by mass spectrometry
    • An, M.; Dai, J.; Wang, Q.; Tong, Y.; Ji, J. Efficient and clean charge derivatization of peptides for analysis by mass spectrometry Rapid Commun. Mass Spectrom. 2010, 24 (13) 1869-1874
    • (2010) Rapid Commun. Mass Spectrom. , vol.24 , Issue.13 , pp. 1869-1874
    • An, M.1    Dai, J.2    Wang, Q.3    Tong, Y.4    Ji, J.5
  • 12
    • 33847210333 scopus 로고    scopus 로고
    • Improving de novo sequencing of peptides using a charged tag and C-terminal digestion
    • Chen, W.; Lee, P. J.; Shion, H.; Ellor, N.; Gebler, J. C. Improving de novo sequencing of peptides using a charged tag and C-terminal digestion Anal. Chem. 2007, 79 (4) 1583-1590
    • (2007) Anal. Chem. , vol.79 , Issue.4 , pp. 1583-1590
    • Chen, W.1    Lee, P.J.2    Shion, H.3    Ellor, N.4    Gebler, J.C.5
  • 14
    • 84879343630 scopus 로고    scopus 로고
    • An Improved Stable Isotope N-Terminal Labeling Approach with Light/Heavy TMPP to Automate Proteogenomics Data Validation: DN-TOP
    • Bertaccini, D.; Vaca, S.; Carapito, C.; Arsene-Ploetze, F.; Van Dorsselaer, A.; Schaeffer-Reiss, C. An Improved Stable Isotope N-Terminal Labeling Approach with Light/Heavy TMPP To Automate Proteogenomics Data Validation: dN-TOP J. Proteome Res. 2013, 12 (6) 3063-3070
    • (2013) J. Proteome Res. , vol.12 , Issue.6 , pp. 3063-3070
    • Bertaccini, D.1    Vaca, S.2    Carapito, C.3    Arsene-Ploetze, F.4    Van Dorsselaer, A.5    Schaeffer-Reiss, C.6
  • 16
    • 79961219436 scopus 로고    scopus 로고
    • Identification of proteolytic products and natural protein N-termini by Terminal Amine Isotopic Labeling of Substrates (TAILS)
    • Doucet, A.; Kleifeld, O.; Kizhakkedathu, J. N.; Overall, C. M. Identification of proteolytic products and natural protein N-termini by Terminal Amine Isotopic Labeling of Substrates (TAILS) Methods Mol. Biol. 2011, 753, 273-287
    • (2011) Methods Mol. Biol. , vol.753 , pp. 273-287
    • Doucet, A.1    Kleifeld, O.2    Kizhakkedathu, J.N.3    Overall, C.M.4
  • 17
    • 80053404377 scopus 로고    scopus 로고
    • Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates
    • Kleifeld, O.; Doucet, A.; Prudova, A.; auf dem Keller, U.; Gioia, M.; Kizhakkedathu, J. N.; Overall, C. M. Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates Nat. Protoc. 2011, 6 (10) 1578-1611
    • (2011) Nat. Protoc. , vol.6 , Issue.10 , pp. 1578-1611
    • Kleifeld, O.1    Doucet, A.2    Prudova, A.3    Auf Dem Keller, U.4    Gioia, M.5    Kizhakkedathu, J.N.6    Overall, C.M.7
  • 20
    • 58149183247 scopus 로고    scopus 로고
    • Selective isolation of N-terminal peptides from proteins and their de novo sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry without regard to unblocking or blocking of N-terminal amino acids
    • Yamaguchi, M.; Nakayama, D.; Shima, K.; Kuyama, H.; Ando, E.; Okamura, T. A.; Ueyama, N.; Nakazawa, T.; Norioka, S.; Nishimura, O.; Tsunasawa, S. Selective isolation of N-terminal peptides from proteins and their de novo sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry without regard to unblocking or blocking of N-terminal amino acids Rapid Commun. Mass Spectrom. 2008, 22 (20) 3313-3319
    • (2008) Rapid Commun. Mass Spectrom. , vol.22 , Issue.20 , pp. 3313-3319
    • Yamaguchi, M.1    Nakayama, D.2    Shima, K.3    Kuyama, H.4    Ando, E.5    Okamura, T.A.6    Ueyama, N.7    Nakazawa, T.8    Norioka, S.9    Nishimura, O.10    Tsunasawa, S.11
  • 21
    • 0038333588 scopus 로고    scopus 로고
    • Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
    • Gevaert, K.; Goethals, M.; Martens, L.; Van Damme, J.; Staes, A.; Thomas, G. R.; Vandekerckhove, J. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides Nat. Biotechnol. 2003, 5, 566-569
    • (2003) Nat. Biotechnol. , vol.5 , pp. 566-569
    • Gevaert, K.1    Goethals, M.2    Martens, L.3    Van Damme, J.4    Staes, A.5    Thomas, G.R.6    Vandekerckhove, J.7
  • 22
    • 42049084149 scopus 로고    scopus 로고
    • Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)
    • Staes, A.; Van Damme, P.; Helsens, K.; Demol, H.; Vandekerckhove, J.; Gevaert, K. Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC) Proteomics 2008, 8 (7) 1362-1370
    • (2008) Proteomics , vol.8 , Issue.7 , pp. 1362-1370
    • Staes, A.1    Van Damme, P.2    Helsens, K.3    Demol, H.4    Vandekerckhove, J.5    Gevaert, K.6
  • 24
    • 40549086253 scopus 로고    scopus 로고
    • Terminal proteomics: N- and C-terminal analyses for high-fidelity identification of proteins using MS
    • Nakazawa, T.; Yamaguchi, M.; Okamura, T. A.; Ando, E.; Nishimura, O.; Tsunasawa, S. Terminal proteomics: N- and C-terminal analyses for high-fidelity identification of proteins using MS Proteomics 2008, 8 (4) 673-685
    • (2008) Proteomics , vol.8 , Issue.4 , pp. 673-685
    • Nakazawa, T.1    Yamaguchi, M.2    Okamura, T.A.3    Ando, E.4    Nishimura, O.5    Tsunasawa, S.6
  • 25
    • 16844368869 scopus 로고    scopus 로고
    • A new method for C-terminal sequence analysis in the proteomic era
    • Samyn, B.; Sergeant, K.; Castanheira, P.; Faro, C.; Van Beeumen, J. A new method for C-terminal sequence analysis in the proteomic era Nat. Methods 2005, 2 (3) 193-200
    • (2005) Nat. Methods , vol.2 , Issue.3 , pp. 193-200
    • Samyn, B.1    Sergeant, K.2    Castanheira, P.3    Faro, C.4    Van Beeumen, J.5
  • 26
    • 77954693076 scopus 로고    scopus 로고
    • Proteome-wide analysis of protein carboxy termini: C terminomics
    • Schilling, O.; Barre, O.; Huesgen, P. F.; Overall, C. M. Proteome-wide analysis of protein carboxy termini: C terminomics Nat. Methods 2010, 7 (7) 508-511
    • (2010) Nat. Methods , vol.7 , Issue.7 , pp. 508-511
    • Schilling, O.1    Barre, O.2    Huesgen, P.F.3    Overall, C.M.4
  • 28
    • 84862332127 scopus 로고    scopus 로고
    • Restricting fermentative potential by proteome remodeling: An adaptive strategy evidenced in Bacillus cereus
    • Clair, G.; Armengaud, J.; Duport, C. Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus Mol. Cell. Proteomics 2012, 11 (6) M111.013102
    • (2012) Mol. Cell. Proteomics , vol.11 , Issue.6 , pp. 111013102
    • Clair, G.1    Armengaud, J.2    Duport, C.3
  • 30
    • 67650770057 scopus 로고    scopus 로고
    • A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa
    • Dupierris, V.; Masselon, C.; Court, M.; Kieffer-Jaquinod, S.; Bruley, C. A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa Bioinformatics 2009, 25 (15) 1980-1981
    • (2009) Bioinformatics , vol.25 , Issue.15 , pp. 1980-1981
    • Dupierris, V.1    Masselon, C.2    Court, M.3    Kieffer-Jaquinod, S.4    Bruley, C.5
  • 31
    • 84856759434 scopus 로고    scopus 로고
    • Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria
    • Christie-Oleza, J. A.; Pina-Villalonga, J. M.; Bosch, R.; Nogales, B.; Armengaud, J. Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria Mol. Cell. Proteomics 2012, 11 (2) M111.013110
    • (2012) Mol. Cell. Proteomics , vol.11 , Issue.2 , pp. 111013110
    • Christie-Oleza, J.A.1    Pina-Villalonga, J.M.2    Bosch, R.3    Nogales, B.4    Armengaud, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.