-
1
-
-
0038681416
-
Diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit genes from groundwater and aquifer microorganisms
-
Alfreider, A., Vogt, C., Hoffman, D., and Babel, W. (2003) Diversity of ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit genes from groundwater and aquifer microorganisms. Microb Ecol 45: 317-328.
-
(2003)
Microb Ecol
, vol.45
, pp. 317-328
-
-
Alfreider, A.1
Vogt, C.2
Hoffman, D.3
Babel, W.4
-
2
-
-
44649180586
-
Catalysis and regulation in Rubisco
-
Andersson, I. (2008) Catalysis and regulation in Rubisco. J Exp Bot 59: 1555-1568.
-
(2008)
J Exp Bot
, vol.59
, pp. 1555-1568
-
-
Andersson, I.1
-
3
-
-
84923638523
-
A function-based screen for seeking RubisCO active clones from metagenomes: novel enzymes influencing RubisCO activity
-
Böhnke, S., and Perner, M. (2015) A function-based screen for seeking RubisCO active clones from metagenomes: novel enzymes influencing RubisCO activity. ISME J 9: 735-745.
-
(2015)
ISME J
, vol.9
, pp. 735-745
-
-
Böhnke, S.1
Perner, M.2
-
4
-
-
84936942726
-
Unusual biology across a group compromising more than 15% of domain Bacteria
-
Online Ahead of Print
-
Brown, C., Hug, L.A., Thomas, B.C., Sharon, I., Castelle, C.J., Singh, A., etal. (2015) Unusual biology across a group compromising more than 15% of domain Bacteria. Nature Online Ahead of Print doi:10.1038/nature14486.
-
(2015)
Nature
-
-
Brown, C.1
Hug, L.A.2
Thomas, B.C.3
Sharon, I.4
Castelle, C.J.5
Singh, A.6
-
5
-
-
84904190583
-
Development of an activity-directed selection system enabled significant improvement of the carboxylation efficiency of Rubisco
-
Cai, Z., Liu, G., Zhang, J., and Li, Y. (2014) Development of an activity-directed selection system enabled significant improvement of the carboxylation efficiency of Rubisco. Protein Cell 5: 552-562.
-
(2014)
Protein Cell
, vol.5
, pp. 552-562
-
-
Cai, Z.1
Liu, G.2
Zhang, J.3
Li, Y.4
-
6
-
-
84875828875
-
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
-
Campbell, J.H., O'Donoghue, P., Campbell, A.G., Schwientek, P., Sczyrba, A., Woyke, T., etal. (2013) UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. PNAS 110: 5540-5545.
-
(2013)
PNAS
, vol.110
, pp. 5540-5545
-
-
Campbell, J.H.1
O'Donoghue, P.2
Campbell, A.G.3
Schwientek, P.4
Sczyrba, A.5
Woyke, T.6
-
7
-
-
84926417610
-
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling
-
Castelle, C.J., Wrighton, K.C., Williams, K.H., and Banfield, J.F. (2015) Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Curr Biol 25: 690-701.
-
(2015)
Curr Biol
, vol.25
, pp. 690-701
-
-
Castelle, C.J.1
Wrighton, K.C.2
Williams, K.H.3
Banfield, J.F.4
-
8
-
-
0242668350
-
Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source
-
Crump, B.C., Kling, G.W., Bahr, M., and Hobbie, J.E. (2003) Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69: 2253-2268.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2253-2268
-
-
Crump, B.C.1
Kling, G.W.2
Bahr, M.3
Hobbie, J.E.4
-
9
-
-
70350015324
-
Community-wide analysis of microbial genome sequence signatures
-
Dick, G.J., Andersson, A.F., Baker, B.J., Simmons, S.L., Thomas, B.C., Yelton, A.P., and Banfield, J.F. (2009) Community-wide analysis of microbial genome sequence signatures. Nature 10: R85.
-
(2009)
Nature
, vol.10
, pp. R85
-
-
Dick, G.J.1
Andersson, A.F.2
Baker, B.J.3
Simmons, S.L.4
Thomas, B.C.5
Yelton, A.P.6
Banfield, J.F.7
-
10
-
-
84962942097
-
-
PhD Thesis in International Plant Cell and Molecular Biology, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
-
Dourado-Ribeiro, M.N. (2013) Burkholderia sp. cadmium tolerance mechanism and its influence in phytoremediation. PhD Thesis in International Plant Cell and Molecular Biology, Universidade de São Paulo, Piracicaba, São Paulo, Brazil, 1-147.
-
(2013)
Burkholderia sp. cadmium tolerance mechanism and its influence in phytoremediation
, pp. 1-147
-
-
Dourado-Ribeiro, M.N.1
-
11
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
12
-
-
0038643328
-
Synthesis of catalytically active form III ribulose 1,5-bisphosphate carboxylase/oxygenase in archaea
-
Finn, M.W., and Tabita, F.R. (2003) Synthesis of catalytically active form III ribulose 1, 5-bisphosphate carboxylase/oxygenase in archaea. J Bacteriol 185: 3049-3059.
-
(2003)
J Bacteriol
, vol.185
, pp. 3049-3059
-
-
Finn, M.W.1
Tabita, F.R.2
-
13
-
-
20444389072
-
2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution
-
2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. Annu Rev Plant Biol 56: 99-113.
-
(2005)
Annu Rev Plant Biol
, vol.56
, pp. 99-113
-
-
Giordano, M.1
Beardall, J.2
Raven, J.A.3
-
14
-
-
84874823502
-
RubisCO gene clusters found in a metagenome microarray from acid mine drainage
-
Guo, X., Yin, H., Cong, Y., Dai, Z., Liang, Y., and Liu, X. (2013) RubisCO gene clusters found in a metagenome microarray from acid mine drainage. Appl Environ Microbiol 79: 2019-2026.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 2019-2026
-
-
Guo, X.1
Yin, H.2
Cong, Y.3
Dai, Z.4
Liang, Y.5
Liu, X.6
-
15
-
-
10344227692
-
Metagenomics: applications of genomics to uncultured microorganisms
-
Handelsman, J. (2004) Metagenomics: applications of genomics to uncultured microorganisms. Appl Environ Microbiol 68: 669-685.
-
(2004)
Appl Environ Microbiol
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
16
-
-
85042810842
-
Role of auxiliary proteins in Rubisco biogenesis and function
-
Online Ahead of Print
-
Hauser, T., Popilka, L., Hartl, F.U., and Hayer-Hartl, M. (2015) Role of auxiliary proteins in Rubisco biogenesis and function. Nature Plants Online Ahead of Print doi:10.1038/nplants.2015.65.
-
(2015)
Nature Plants
-
-
Hauser, T.1
Popilka, L.2
Hartl, F.U.3
Hayer-Hartl, M.4
-
17
-
-
77954733234
-
Coupled arsenotrophy in a hot spring photosynthetic biofilm at Mono Lake, California
-
Hoeft, S.E., Kulp, T.R., Han, S., Lanoil, B., and Oremland, R.S. (2010) Coupled arsenotrophy in a hot spring photosynthetic biofilm at Mono Lake, California. Appl Environ Microbiol 76: 4633-4639.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4633-4639
-
-
Hoeft, S.E.1
Kulp, T.R.2
Han, S.3
Lanoil, B.4
Oremland, R.S.5
-
18
-
-
84857916925
-
Distribution and phylogenetic diversity of cbbM genes encoding RubisCO form II in a deep-sea hydrothermal field revealed by newly designed PCR primers
-
Kato, S., Nakawake, M., Ohkuma, M., and Yamagishi, A. (2012) Distribution and phylogenetic diversity of cbbM genes encoding RubisCO form II in a deep-sea hydrothermal field revealed by newly designed PCR primers. Extremophiles 16: 277-283.
-
(2012)
Extremophiles
, vol.16
, pp. 277-283
-
-
Kato, S.1
Nakawake, M.2
Ohkuma, M.3
Yamagishi, A.4
-
19
-
-
84863507534
-
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
-
Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., etal. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647-1649.
-
(2012)
Bioinformatics
, vol.28
, pp. 1647-1649
-
-
Kearse, M.1
Moir, R.2
Wilson, A.3
Stones-Havas, S.4
Cheung, M.5
Sturrock, S.6
-
20
-
-
0031591537
-
Purification and some properties of ribulose 1,5-bisphosphate carboxylases/oxygenases from Acinetobacter sp. strain JC1 and Hydrogenophaga pseudoflava
-
Kim, E.Y., Ro, Y.T., and Kim, Y.M. (1997) Purification and some properties of ribulose 1, 5-bisphosphate carboxylases/oxygenases from Acinetobacter sp. strain JC1 and Hydrogenophaga pseudoflava. Mol Cells 7: 380-388.
-
(1997)
Mol Cells
, vol.7
, pp. 380-388
-
-
Kim, E.Y.1
Ro, Y.T.2
Kim, Y.M.3
-
21
-
-
49649113391
-
Arsenic (III) fuels anoxygenic photosynthesis in hot spring biofilms from Mono Lake, California
-
Kulp, T.R., Hoeft, S.E., Asao, M., Madigan, M.T., Hollibaugh, J.T., Fisher, J.C., etal. (2008) Arsenic (III) fuels anoxygenic photosynthesis in hot spring biofilms from Mono Lake, California. Science 321: 967-970.
-
(2008)
Science
, vol.321
, pp. 967-970
-
-
Kulp, T.R.1
Hoeft, S.E.2
Asao, M.3
Madigan, M.T.4
Hollibaugh, J.T.5
Fisher, J.C.6
-
22
-
-
84930942030
-
Identification of novel esterase-active enzymes from hot environments by use of the host bacterium Thermus thermophilus
-
Leis, B., Angelov, A., Mientus, M., Li, H., Pham, V.T.T., Lauinger, B., etal. (2015) Identification of novel esterase-active enzymes from hot environments by use of the host bacterium Thermus thermophilus. Front Microbiol 6: 1-12.
-
(2015)
Front Microbiol
, vol.6
, pp. 1-12
-
-
Leis, B.1
Angelov, A.2
Mientus, M.3
Li, H.4
Pham, V.T.T.5
Lauinger, B.6
-
23
-
-
84908510011
-
A faster Rubisco with potential to increase photosynthesis in crops
-
Lin, M.T., Occhialini, A., Andralojc, P.J., Parry, M.A.J., and Hanson, M.R. (2014) A faster Rubisco with potential to increase photosynthesis in crops. Nature 513: 547-550.
-
(2014)
Nature
, vol.513
, pp. 547-550
-
-
Lin, M.T.1
Occhialini, A.2
Andralojc, P.J.3
Parry, M.A.J.4
Hanson, M.R.5
-
24
-
-
50949090470
-
Evolving improved Synechococcus RubisCO functional expression in Escherichia coli
-
Mueller-Cajar, O., and Whitney, S.M. (2008) Evolving improved Synechococcus RubisCO functional expression in Escherichia coli. Biochem J 414: 205-214.
-
(2008)
Biochem J
, vol.414
, pp. 205-214
-
-
Mueller-Cajar, O.1
Whitney, S.M.2
-
25
-
-
50549188450
-
Light-dependent utilization of organic compounds and photoproduction of molecular hydrogen by photosynthetic bacteria: relationships with nitrogen metabolism
-
Ormerod, J.G., Ormerod, K.S., and Gest, H. (1961) Light-dependent utilization of organic compounds and photoproduction of molecular hydrogen by photosynthetic bacteria: relationships with nitrogen metabolism. Arch Biochem Biophys 94: 449-463.
-
(1961)
Arch Biochem Biophys
, vol.94
, pp. 449-463
-
-
Ormerod, J.G.1
Ormerod, K.S.2
Gest, H.3
-
26
-
-
33644980943
-
Directed evolution of RubisCO hypermorphs through genetic selection in engineered E. coli
-
Parikh, M.R., Greene, D.N., Woods, K.K., and Matsumura, I. (2006) Directed evolution of RubisCO hypermorphs through genetic selection in engineered E. coli. Protein Eng Des Sel 19: 113-119.
-
(2006)
Protein Eng Des Sel
, vol.19
, pp. 113-119
-
-
Parikh, M.R.1
Greene, D.N.2
Woods, K.K.3
Matsumura, I.4
-
27
-
-
18844481269
-
Cloning the soil metagenome: a strategy for accessing the genetic diversity of uncultured microorganisms
-
Rondon, M.R., August, P.R., Betterman, A.D., Brady, S.F., Grossman, T.H., Liles, M.R., etal. (2000) Cloning the soil metagenome: a strategy for accessing the genetic diversity of uncultured microorganisms. Appl Environ Microbiol 66: 2541-2547.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
August, P.R.2
Betterman, A.D.3
Brady, S.F.4
Grossman, T.H.5
Liles, M.R.6
-
28
-
-
70349758335
-
A Rubisco mutant that confers growth under normally 'inhibitory' oxygen concentration
-
Satagopan, S., Scott, S.S., Smith, T.G., and Tabita, F.R. (2009) A Rubisco mutant that confers growth under normally 'inhibitory' oxygen concentration. Biochemistry 48: 9076-9083.
-
(2009)
Biochemistry
, vol.48
, pp. 9076-9083
-
-
Satagopan, S.1
Scott, S.S.2
Smith, T.G.3
Tabita, F.R.4
-
29
-
-
84905385089
-
Structure-function studies with the unique hexameric form II RubisCO from Rhodopseudomonas palustris
-
Satagopan, S., Chan, S., Perry, L.J., and Tabita, F.R. (2014) Structure-function studies with the unique hexameric form II RubisCO from Rhodopseudomonas palustris. J Biol Chem 289: 21433-21450.
-
(2014)
J Biol Chem
, vol.289
, pp. 21433-21450
-
-
Satagopan, S.1
Chan, S.2
Perry, L.J.3
Tabita, F.R.4
-
30
-
-
0041663412
-
Positive and negative selection of mutant forms of prokaryotic (cyanobacterial) ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Smith, S.A., and Tabita, F.R. (2003) Positive and negative selection of mutant forms of prokaryotic (cyanobacterial) ribulose-1, 5-bisphosphate carboxylase/oxygenase. J Mol Biol 331: 557-569.
-
(2003)
J Mol Biol
, vol.331
, pp. 557-569
-
-
Smith, S.A.1
Tabita, F.R.2
-
31
-
-
0037001967
-
Rubisco: structure, regulatory interactions, and possibilities for a better enzyme
-
Spreitzer, J.R., and Salvucci, M.E. (2002) Rubisco: structure, regulatory interactions, and possibilities for a better enzyme. Annu Rev Plant Biol 53: 449-475.
-
(2002)
Annu Rev Plant Biol
, vol.53
, pp. 449-475
-
-
Spreitzer, J.R.1
Salvucci, M.E.2
-
32
-
-
84899553363
-
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
33
-
-
0032840522
-
Microbial ribulose 1,5-bisphosphate carboxylase/oxgenase: a different perspective
-
Tabita, F.R. (1999) Microbial ribulose 1, 5-bisphosphate carboxylase/oxgenase: a different perspective. Photosynth Res 60: 1-28.
-
(1999)
Photosynth Res
, vol.60
, pp. 1-28
-
-
Tabita, F.R.1
-
34
-
-
47249107683
-
Phylogenetic and evolutionary relationships of RubisCO and RubisCO-like proteins and the functional lessons provided by diverse molecular forms
-
Tabita, F.R., Hanson, T.E., Satagopan, S., Witte, B.H., and Kreel, N.E. (2008) Phylogenetic and evolutionary relationships of RubisCO and RubisCO-like proteins and the functional lessons provided by diverse molecular forms. Philos Trans R Soc Lond B Biol Sci 363: 2629-2640.
-
(2008)
Philos Trans R Soc Lond B Biol Sci
, vol.363
, pp. 2629-2640
-
-
Tabita, F.R.1
Hanson, T.E.2
Satagopan, S.3
Witte, B.H.4
Kreel, N.E.5
-
35
-
-
84927155310
-
Microbial communities in dark oligotrophic volcanic ice cave ecosystems of Mt. Erebus, Antarctica
-
Tebo, B.M., Davis, R.E., Anitori, R.P., Connell, L.B., Schiffman, P., and Staudigel, H. (2015) Microbial communities in dark oligotrophic volcanic ice cave ecosystems of Mt. Erebus, Antarctica. Front Microbiol 6: 1-14.
-
(2015)
Front Microbiol
, vol.6
, pp. 1-14
-
-
Tebo, B.M.1
Davis, R.E.2
Anitori, R.P.3
Connell, L.B.4
Schiffman, P.5
Staudigel, H.6
-
36
-
-
0037694034
-
Green-like' and 'Red-like' RubisCO cbbL genes in Rhodobacter azotoformans
-
Uchino, Y., and Yokota, A. (2003) Green-like' and 'Red-like' RubisCO cbbL genes in Rhodobacter azotoformans. Mol Biol Evol 20: 821-830.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 821-830
-
-
Uchino, Y.1
Yokota, A.2
-
37
-
-
84936992706
-
Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology
-
Ufarté, L., Potocki-Veronese, G., and Laville, E. (2015) Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology. Front Microbiol 6: 1-10.
-
(2015)
Front Microbiol
, vol.6
, pp. 1-10
-
-
Ufarté, L.1
Potocki-Veronese, G.2
Laville, E.3
-
38
-
-
0034725524
-
Multiple regulators and their interactions in vivo and in vitro with the cbb regulons of Rhodobacter capsulatus
-
Vichivanives, P., Bird, T.H., Bauer, C.E., and Tabita, F.R. (2000) Multiple regulators and their interactions in vivo and in vitro with the cbb regulons of Rhodobacter capsulatus. J Mol Biol 300: 1079-1099.
-
(2000)
J Mol Biol
, vol.300
, pp. 1079-1099
-
-
Vichivanives, P.1
Bird, T.H.2
Bauer, C.E.3
Tabita, F.R.4
-
39
-
-
77951538389
-
Functional prokaryotic RubisCO from an oceanic metagenomic library
-
Witte, B., John, D., Wawrik, B., Paul, J.H., Dayan, D., and Tabita, F.R. (2010) Functional prokaryotic RubisCO from an oceanic metagenomic library. Appl Environ Microbiol 76: 2997-3003.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 2997-3003
-
-
Witte, B.1
John, D.2
Wawrik, B.3
Paul, J.H.4
Dayan, D.5
Tabita, F.R.6
-
40
-
-
84866772472
-
Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla
-
Wrighton, K.C., Thomas, B.C., Sharon, I., Miller, C.S., Castelle, C.J., VerBerkmoes, N.C., etal. (2012) Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science 337: 1661-1665.
-
(2012)
Science
, vol.337
, pp. 1661-1665
-
-
Wrighton, K.C.1
Thomas, B.C.2
Sharon, I.3
Miller, C.S.4
Castelle, C.J.5
VerBerkmoes, N.C.6
-
41
-
-
84962939816
-
-
Submitted.
-
Wrighton, K.C., Castelle, C.J., Varaljay, V.A., Satagopan, S., Thomas, B.C., Williams, K.H., etal. RubisCO of a nucleotide pathway known from Archaea, is central to the metabolism of diverse uncultivated bacteria. Submitted.
-
RubisCO of a nucleotide pathway known from Archaea, is central to the metabolism of diverse uncultivated bacteria
-
-
Wrighton, K.C.1
Castelle, C.J.2
Varaljay, V.A.3
Satagopan, S.4
Thomas, B.C.5
Williams, K.H.6
-
42
-
-
35148896749
-
Engineering of a type III Rubisco from a hyperthermophilic Archaeon in order to enhance catalytic performance in mesophilic host cells
-
Yoshida, S., Haruyuki, A., and Imanaka, T. (2007) Engineering of a type III Rubisco from a hyperthermophilic Archaeon in order to enhance catalytic performance in mesophilic host cells. Appl Envrion Microbiol 73: 6254-6261.
-
(2007)
Appl Envrion Microbiol
, vol.73
, pp. 6254-6261
-
-
Yoshida, S.1
Haruyuki, A.2
Imanaka, T.3
-
43
-
-
0030070838
-
DNA recovery from soils of diverse composition
-
Zhou, J., Bruns, M.A., and Tiedje, J.M. (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62: 316-322.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 316-322
-
-
Zhou, J.1
Bruns, M.A.2
Tiedje, J.M.3
|