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Volumn 6, Issue MAR, 2015, Pages

Microbial communities in dark oligotrophic volcanic ice cave ecosystems of Mt. Erebus, Antarctica

Author keywords

Carbon monoxide; Chemolithoautotrophy; Oligotrophy; Ribulose 1,5 bisphosphate carboxylase oxygenase; RubisCO

Indexed keywords

ADENOSINE TRIPHOSPHATE CITRATE SYNTHASE; NATURAL ORGANIC MATTER; RIBULOSEBISPHOSPHATE CARBOXYLASE;

EID: 84927155310     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.00179     Document Type: Article
Times cited : (96)

References (57)
  • 1
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R. I., Krumholz, L., and Stahl, D. A. (1990). Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172, 762-770.
    • (1990) J. Bacteriol , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 2
    • 0742322930 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis of a bacterial community in an oligotrophic cave environment
    • Barton, H. A., Taylor, M. R., and Pace, N. R. (2004). Molecular phylogenetic analysis of a bacterial community in an oligotrophic cave environment. Geomicrobiol. J. 21, 11-20. doi: 10.1080/01490450490253428.
    • (2004) Geomicrobiol. J , vol.21 , pp. 11-20
    • Barton, H.A.1    Taylor, M.R.2    Pace, N.R.3
  • 4
    • 34547568706 scopus 로고    scopus 로고
    • Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium
    • Bryant, D. A., Costas, A. M., Maresca, J. A., Chew, A. G., Klatt, C. G., Bateson, M. M., et al. (2007). Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium. Science 317, 523-526. doi: 10.1126/science.1143236.
    • (2007) Science , vol.317 , pp. 523-526
    • Bryant, D.A.1    Costas, A.M.2    Maresca, J.A.3    Chew, A.G.4    Klatt, C.G.5    Bateson, M.M.6
  • 5
    • 0035727993 scopus 로고    scopus 로고
    • Organic carbon cycling in Taylor Valley, Antarctica: quantifying soil reservoirs and soil respiration
    • Burkins, M. B., Virginia, R. A., and Wall, D. H. (2001). Organic carbon cycling in Taylor Valley, Antarctica: quantifying soil reservoirs and soil respiration. Global Change Biol. 7, 113-125. doi: 10.1046/j.1365-2486.2001.00393.x.
    • (2001) Global Change Biol , vol.7 , pp. 113-125
    • Burkins, M.B.1    Virginia, R.A.2    Wall, D.H.3
  • 6
    • 75749098523 scopus 로고    scopus 로고
    • On the rocks: the microbiology of Antarctic Dry Valley soils
    • Cary, S. C., McDonald, I. R., Barrett, J. E., and Cowan, D. A. (2010). On the rocks: the microbiology of Antarctic Dry Valley soils. Nat. Rev. Microbiol. 8, 129-138. doi: 10.1038/nrmicro2281.
    • (2010) Nat. Rev. Microbiol , vol.8 , pp. 129-138
    • Cary, S.C.1    McDonald, I.R.2    Barrett, J.E.3    Cowan, D.A.4
  • 7
    • 80054855179 scopus 로고    scopus 로고
    • Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
    • Chang, Y.-J., Land, M., Hauser, L., Chertkov, O., Del Rio, T. G., Copeland, A., et al. (2011). Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T). Stand. Genomic Sci. 5, 97-111. doi: 10.4056/sigs.2114901.
    • (2011) Stand. Genomic Sci , vol.5 , pp. 97-111
    • Chang, Y.-J.1    Land, M.2    Hauser, L.3    Chertkov, O.4    Del Rio, T.G.5    Copeland, A.6
  • 8
    • 70349446265 scopus 로고    scopus 로고
    • Life without light: microbial diversity and evidence of sulfur-and ammonium-based chemolithotrophy in Movile Cave
    • Chen, Y., Wu, L., Boden, R., Hillebrand, A., Kumaresan, D., Moussard, H., et al. (2009). Life without light: microbial diversity and evidence of sulfur-and ammonium-based chemolithotrophy in Movile Cave. ISME J. 3, 1093-1104. doi: 10.1038/ismej.2009.57.
    • (2009) ISME J , vol.3 , pp. 1093-1104
    • Chen, Y.1    Wu, L.2    Boden, R.3    Hillebrand, A.4    Kumaresan, D.5    Moussard, H.6
  • 9
    • 33748747869 scopus 로고    scopus 로고
    • Distribution and abundance of fungi in the soils of Taylor Valley, Antarctica
    • Connell, L. B., Redman, R. S., Craig, S. D., and Rodriguez, R. J. (2006). Distribution and abundance of fungi in the soils of Taylor Valley, Antarctica. Soil Biol. Biochem. 38, 3083-3094. doi: 10.1016/j.soilbio.2006.02.016.
    • (2006) Soil Biol. Biochem , vol.38 , pp. 3083-3094
    • Connell, L.B.1    Redman, R.S.2    Craig, S.D.3    Rodriguez, R.J.4
  • 10
    • 84901330784 scopus 로고    scopus 로고
    • Fungal diversity in a dark oligotrophic volcanic ecosystem (DOVE) on Mount Erebus, Antarctica
    • Connell, L., and Staudigel, H. (2013). Fungal diversity in a dark oligotrophic volcanic ecosystem (DOVE) on Mount Erebus, Antarctica. Biology. 2, 798-809. doi: 10.3390/biology2020798.
    • (2013) Biology , vol.2 , pp. 798-809
    • Connell, L.1    Staudigel, H.2
  • 11
    • 0019207373 scopus 로고
    • Role of microorganisms in the consumption and production of atmospheric carbon monoxide by soil
    • Conrad, R., and Seiler, W. (1980). Role of microorganisms in the consumption and production of atmospheric carbon monoxide by soil. Appl. Environ. Microbiol. 40: 437-445.
    • (1980) Appl. Environ. Microbiol , vol.40 , pp. 437-445
    • Conrad, R.1    Seiler, W.2
  • 12
    • 84927159229 scopus 로고    scopus 로고
    • "Overview of recent findings regarding the fumarolic ice caves of Erebus volcano, Antarctica"
    • (Kagoshima)
    • Curtis, A. G., Kyle, P., Fischer, T., Oppenheimer, C., and Sano, Y. (2013). "Overview of recent findings regarding the fumarolic ice caves of Erebus volcano, Antarctica, " in IAVCEI 2013 Scientific Assembly (Kagoshima).
    • (2013) IAVCEI 2013 Scientific Assembly
    • Curtis, A.G.1    Kyle, P.2    Fischer, T.3    Oppenheimer, C.4    Sano, Y.5
  • 13
    • 80052002664 scopus 로고    scopus 로고
    • Geothermal point sources identified in a fumarolic ice cave on Erebus volcano, Antarctica using fiber optic distributed temperature sensing
    • Curtis, A., and Kyle, P. (2011). Geothermal point sources identified in a fumarolic ice cave on Erebus volcano, Antarctica using fiber optic distributed temperature sensing. Geophys. Res. Lett. 38, L16802. doi: 10.1029/2011GL048272.
    • (2011) Geophys. Res. Lett , vol.38 , pp. L16802
    • Curtis, A.1    Kyle, P.2
  • 14
    • 0026755238 scopus 로고
    • Archea in coastal marine environments
    • Delong, E. F. (1992). Archea in coastal marine environments. Proc. Natl. Acad. Sci. U.S.A. 89, 5685-5689. doi: 10.1073/pnas.89.12.5685.
    • (1992) Proc. Natl. Acad. Sci. U.S.A , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 16
    • 42449095289 scopus 로고    scopus 로고
    • Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy
    • Einen, J., Thorseth, I. H., and Øvreås, L. (2008). Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy. FEMS Microbiol. Lett. 282, 182-187. doi: 10.1111/j.1574-6968.2008.01119.x.
    • (2008) FEMS Microbiol. Lett , vol.282 , pp. 182-187
    • Einen, J.1    Thorseth, I.H.2    Øvreås, L.3
  • 17
    • 73449134067 scopus 로고    scopus 로고
    • Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA)
    • Engel, A. S., Meisinger, D. B., Porter, M. L., Payn, R. A., Schmid, M., Stern, L. A., et al. (2009). Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA). ISME J. 4, 98-110. doi: 10.1038/ismej.2009.91.
    • (2009) ISME J , vol.4 , pp. 98-110
    • Engel, A.S.1    Meisinger, D.B.2    Porter, M.L.3    Payn, R.A.4    Schmid, M.5    Stern, L.A.6
  • 18
    • 84927137225 scopus 로고    scopus 로고
    • "Gas discharges in fumarolic ice caves of Erebus volcano, Antarctica"
    • Washington, DC: American Geophysical Union
    • Fischer, T. P., Curtis, A. G., Kyle, P. R., and Sano, Y. (2013). "Gas discharges in fumarolic ice caves of Erebus volcano, Antarctica, " in AGU Fall Meeting Abstracts 1, 2706. Washington, DC: American Geophysical Union.
    • (2013) AGU Fall Meeting Abstracts , vol.1 , pp. 2706
    • Fischer, T.P.1    Curtis, A.G.2    Kyle, P.R.3    Sano, Y.4
  • 19
    • 0033558863 scopus 로고    scopus 로고
    • Biological mediation of ocean crust alteration: how deep is the deep biosphere?
    • Furnes, H., and Staudigel, H. (1999). Biological mediation of ocean crust alteration: how deep is the deep biosphere? Earth Planet. Sci. Lett. 166, 97-103. doi: 10.1016/S0012-821X(99)00005-9.
    • (1999) Earth Planet. Sci. Lett , vol.166 , pp. 97-103
    • Furnes, H.1    Staudigel, H.2
  • 22
    • 0032901108 scopus 로고    scopus 로고
    • Hydrogenophilus thermoluteolus gen. nov., sp. nov., a thermophilic, facultatively chemolithoautotrophic, hydrogen-oxidizing bacterium
    • Hyashi, N. R., Ishida, T., Yokota, A., Kodama, T., and Igarashi, Y. (1999). Hydrogenophilus thermoluteolus gen. nov., sp. nov., a thermophilic, facultatively chemolithoautotrophic, hydrogen-oxidizing bacterium. Int. J. Sys. Bacteriol. 49, 783-786. doi: 10.1099/00207713-49-2-783.
    • (1999) Int. J. Sys. Bacteriol , vol.49 , pp. 783-786
    • Hyashi, N.R.1    Ishida, T.2    Yokota, A.3    Kodama, T.4    Igarashi, Y.5
  • 23
    • 0032800755 scopus 로고    scopus 로고
    • Evidence for the presence of the reductive pentose phosphate cycle in a filamentous anoxygenic photosynthetic bacterium, Oscillochloris trichoides strain DG-6
    • Ivanovsky, R. N., Fal, Y. I., Berg, I. A., Ugolkova, N. V., Krasilnikova, E. N., Keppen, O. I., et al. (1999). Evidence for the presence of the reductive pentose phosphate cycle in a filamentous anoxygenic photosynthetic bacterium, Oscillochloris trichoides strain DG-6. Microbiology 145, 1743-1748. doi: 10.1099/13500872-145-7-1743.
    • (1999) Microbiology , vol.145 , pp. 1743-1748
    • Ivanovsky, R.N.1    Fal, Y.I.2    Berg, I.A.3    Ugolkova, N.V.4    Krasilnikova, E.N.5    Keppen, O.I.6
  • 24
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen, P. H. (2006). Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl. Environ. Microbiol. 72, 1719-1728. doi: 10.1128/AEM.72.3.1719-1728.2006.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 25
    • 84355162257 scopus 로고    scopus 로고
    • Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm
    • Jones, D. S., Albrecht, H. L., Dawson, K. S., Schaperdoth, I., Freeman, K. H., Pi, Y., et al. (2012). Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm. ISME J. 6, 158-170. doi: 10.1038/ismej.2011.75.
    • (2012) ISME J , vol.6 , pp. 158-170
    • Jones, D.S.1    Albrecht, H.L.2    Dawson, K.S.3    Schaperdoth, I.4    Freeman, K.H.5    Pi, Y.6
  • 26
    • 84867042348 scopus 로고    scopus 로고
    • Shrinking majority of the deep biosphere
    • Jørgensen, B. B. (2012). Shrinking majority of the deep biosphere. Proc. Natl. Acad. Sci. U.S.A. 109, 15976-15977. doi: 10.1073/pnas.1213639109.
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 15976-15977
    • Jørgensen, B.B.1
  • 27
    • 84867043272 scopus 로고    scopus 로고
    • Global distribution of microbial abundance and biomas in subseafloor sediment
    • Kallmeyer, J., Pockalny, R., Adhikari, R. R., Smith, D. C., and D'Hondt, S. (2012). Global distribution of microbial abundance and biomas in subseafloor sediment. Proc. Natl. Acad. Sci. U.S.A. 109, 16213-16216. doi: 10.1073/pnas.1203849109.
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 16213-16216
    • Kallmeyer, J.1    Pockalny, R.2    Adhikari, R.R.3    Smith, D.C.4    D'Hondt, S.5
  • 28
    • 55549102018 scopus 로고    scopus 로고
    • Geochemistry and mineralogy of the phonolite lava lake, Erebus volcano, Antarctica: 1972-2004 and comparison with older lavas
    • Kelly, P. J., Kyle, P. R., Dunbar, N. W., and Sims, K. W. W. (2008). Geochemistry and mineralogy of the phonolite lava lake, Erebus volcano, Antarctica: 1972-2004 and comparison with older lavas. J. Volcanol. Geothermal Res. 177, 589-605. doi: 10.1016/j.jvolgeores.2007.11.025.
    • (2008) J. Volcanol. Geothermal Res , vol.177 , pp. 589-605
    • Kelly, P.J.1    Kyle, P.R.2    Dunbar, N.W.3    Sims, K.W.W.4
  • 29
    • 80052338122 scopus 로고    scopus 로고
    • Autotrophic methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation
    • Khadem, A. F., Pol, A., Wieczorek, A., Mohammadi, S. S., Francoijs, K. J., Studnnenberg, H. G., et al. (2011). Autotrophic methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation. J. Bacteriol. 193, 4438-4446. doi: 10.1128/JB.00407-11.
    • (2011) J. Bacteriol , vol.193 , pp. 4438-4446
    • Khadem, A.F.1    Pol, A.2    Wieczorek, A.3    Mohammadi, S.S.4    Francoijs, K.J.5    Studnnenberg, H.G.6
  • 30
    • 84897945994 scopus 로고    scopus 로고
    • Description of Thermogemmatispora carboxidivorans sp. nov., a novel a carbon-monoxide-oxidizing member of the class Ktedonobacteria isolated from a geothermally-heated biofilm, and analysis of carbon monoxide oxidation by members of the class Ktedonobacteria
    • King, C. E., and King, G. M. (2014). Description of Thermogemmatispora carboxidivorans sp. nov., a novel a carbon-monoxide-oxidizing member of the class Ktedonobacteria isolated from a geothermally-heated biofilm, and analysis of carbon monoxide oxidation by members of the class Ktedonobacteria. Int. J. Sys. Evol. Microbiol. 64, 1244-1251. doi: 10.1099/ijs.0.059675-0.
    • (2014) Int. J. Sys. Evol. Microbiol , vol.64 , pp. 1244-1251
    • King, C.E.1    King, G.M.2
  • 31
    • 33846476676 scopus 로고    scopus 로고
    • Distribution, diversity and ecology of aerobic CO-oxidizing bacteria
    • King, G. M., and Weber, C. F. (2007). Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat. Rev. Microbiol. 5, 107-118. doi: 10.1038/nrmicro1595.
    • (2007) Nat. Rev. Microbiol , vol.5 , pp. 107-118
    • King, G.M.1    Weber, C.F.2
  • 32
    • 0001857117 scopus 로고
    • '16S/23S rRNA sequencing'
    • eds E. Stackebrandt and M. Goodfellow (New York, NY: John Wiley)
    • Lane, D. S. (1991). "16S/23S rRNA sequencing, " in Nucleic Acid Techniques in Bacterial Systematics eds E. Stackebrandt and M. Goodfellow (New York, NY: John Wiley), 115-148.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-148
    • Lane, D.S.1
  • 33
    • 58149179980 scopus 로고    scopus 로고
    • rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea
    • Lee, Z. M., Bussema, C., and Schmidt, T. M. (2009). rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. Nucleic Acids Res. 37, D489-D493. doi: 10.1093/nar/gkn689.
    • (2009) Nucleic Acids Res , vol.37 , pp. D489-D493
    • Lee, Z.M.1    Bussema, C.2    Schmidt, T.M.3
  • 34
    • 84862982952 scopus 로고    scopus 로고
    • The potential for microbial life in the highest elevation (>6000 m.a.s.l.) mineral soils of the Atacama region
    • Lynch, R. C., King, A. J., Farias, M. E., Sowell, P., Vitry, C., and Schmidt, S. K. (2012). The potential for microbial life in the highest elevation (>6000 m.a.s.l.) mineral soils of the Atacama region. J. Geophys. Res. Biogeosci. 117:G02028. doi: 10.1029/2012JG001961.
    • (2012) J. Geophys. Res. Biogeosci , vol.117 , pp. G02028
    • Lynch, R.C.1    King, A.J.2    Farias, M.E.3    Sowell, P.4    Vitry, C.5    Schmidt, S.K.6
  • 35
    • 0003654527 scopus 로고
    • Geothermal activity in Victoria Land, Antarctica
    • Lyon, G. L., and Giggenbach, W. F. (1973). Geothermal activity in Victoria Land, Antarctica. N. Z. J. Geol. Geophys. 17, 511-521. doi: 10.1080/00288306.1973.10421578.
    • (1973) N. Z. J. Geol. Geophys , vol.17 , pp. 511-521
    • Lyon, G.L.1    Giggenbach, W.F.2
  • 37
    • 0031847928 scopus 로고    scopus 로고
    • Diversity of deep-sea hydrothemal vent Archaea from Loihi seamount, Hawaii
    • Moyer, C. L., Tiedje, J. M., Dobbs, F. C., and Karl, D. M. (1998). Diversity of deep-sea hydrothemal vent Archaea from Loihi seamount, Hawaii. Deep Sea Res. II. 45, 303-317. doi: 10.1016/S0967-0645(97)00081-7.
    • (1998) Deep Sea Res. II , vol.45 , pp. 303-317
    • Moyer, C.L.1    Tiedje, J.M.2    Dobbs, F.C.3    Karl, D.M.4
  • 38
    • 35548966143 scopus 로고    scopus 로고
    • Evolution and adaptation of fungi at boundries of life
    • Onofri, S., Selbmann, L., de Hoog, G. S., Grube, M., Barreca, D., Ruisi, S., et al. (2007). Evolution and adaptation of fungi at boundries of life. Adv. Space Res. 40, 1657-1664. doi: 10.1016/j.asr.2007.06.004.
    • (2007) Adv. Space Res , vol.40 , pp. 1657-1664
    • Onofri, S.1    Selbmann, L.2    de Hoog, G.S.3    Grube, M.4    Barreca, D.5    Ruisi, S.6
  • 39
    • 55549124564 scopus 로고    scopus 로고
    • Probing the magma plumbing of Erebus volcano, Antarctica, by open-path FTIR spectroscopy of gas emission
    • Oppenheimer, C., and Kyle, P. R. (2008). Probing the magma plumbing of Erebus volcano, Antarctica, by open-path FTIR spectroscopy of gas emission. J. Volcanol. Geothermal Res. 177, 743-758. doi: 10.1016/j.jvolgeores.2007.08.022.
    • (2008) J. Volcanol. Geothermal Res , vol.177 , pp. 743-758
    • Oppenheimer, C.1    Kyle, P.R.2
  • 40
    • 84892991102 scopus 로고    scopus 로고
    • Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave
    • Ortiz, M., Legatski, A., Neilson, J. W., Fryslie, B., Nelson, W. M., Wing, R. A., et al. (2014). Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave. ISME J. 8, 478-491. doi: 10.1038/ismej.2013.159.
    • (2014) ISME J , vol.8 , pp. 478-491
    • Ortiz, M.1    Legatski, A.2    Neilson, J.W.3    Fryslie, B.4    Nelson, W.M.5    Wing, R.A.6
  • 42
    • 84886238230 scopus 로고    scopus 로고
    • Preliminary analysis of life within a former Subglacial Lake sediment in Antarctica
    • Pearce, D., Hodgson, D., Thorne, M., Burns, G., and Cockell, C. (2013). Preliminary analysis of life within a former Subglacial Lake sediment in Antarctica. Diversity 5, 680-702. doi: 10.3390/d5030680.
    • (2013) Diversity , vol.5 , pp. 680-702
    • Pearce, D.1    Hodgson, D.2    Thorne, M.3    Burns, G.4    Cockell, C.5
  • 43
    • 84864134721 scopus 로고    scopus 로고
    • SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes
    • Pruesse, E., Peplies, J., and Glöckner, F. O. (2012). SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28, 1823-1829. doi: 10.1093/bioinformatics/bts252.
    • (2012) Bioinformatics , vol.28 , pp. 1823-1829
    • Pruesse, E.1    Peplies, J.2    Glöckner, F.O.3
  • 44
    • 0029661472 scopus 로고    scopus 로고
    • A chemoautotrophically based cave ecosystem
    • Sarbu, S. M., Kane, T. C., and Kinkle, B. K. (1996). A chemoautotrophically based cave ecosystem. Science 272, 1953-1955. doi: 10.1126/science.272.5270.1953.
    • (1996) Science , vol.272 , pp. 1953-1955
    • Sarbu, S.M.1    Kane, T.C.2    Kinkle, B.K.3
  • 45
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P. D., and Handelsman, J. (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71, 1501-1506. doi: 10.1128/AEM.71.3.1501-1506.2005.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 46
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T. M., DeLong, E. F., and Pace, N. R. (1991). Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173, 4371-4378.
    • (1991) J. Bacteriol , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    DeLong, E.F.2    Pace, N.R.3
  • 47
    • 61449163988 scopus 로고    scopus 로고
    • Microbial biodiversity of thermophilic communities in hot mineral soils of Tramway Ridge, Mount Erebus, Antarctica
    • Soo, R. M., Wood, S. A., Grzymski, J. J., McDonald, I. R., and Cary, S. C. (2009). Microbial biodiversity of thermophilic communities in hot mineral soils of Tramway Ridge, Mount Erebus, Antarctica. Environ. Microbiol. 11, 715-728. doi: 10.1111/j.1462-2920.2009.01859.x.
    • (2009) Environ. Microbiol , vol.11 , pp. 715-728
    • Soo, R.M.1    Wood, S.A.2    Grzymski, J.J.3    McDonald, I.R.4    Cary, S.C.5
  • 48
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690. doi: 10.1093/bioinformatics/btl446.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 49
    • 48349120487 scopus 로고    scopus 로고
    • 3.5 billion years of glass bioalteration: volcanic rocks as a basis for microbial life?
    • Staudigel, H., Furnes, H., McLoughlin, N., Banerjee, N. R., Connell, L. B., and Templeton, A. (2008). 3.5 billion years of glass bioalteration: volcanic rocks as a basis for microbial life? Earth Sci. Rev. 89, 156-176. doi: 10.1016/j.earscirev.2008.04.005.
    • (2008) Earth Sci. Rev , vol.89 , pp. 156-176
    • Staudigel, H.1    Furnes, H.2    McLoughlin, N.3    Banerjee, N.R.4    Connell, L.B.5    Templeton, A.6
  • 50
    • 0028972702 scopus 로고
    • Lithoautotrophic microbial ecosystems in deep basalt aquifers
    • Stevens, T. O., and McKinley, J. P. (1995). Lithoautotrophic microbial ecosystems in deep basalt aquifers. Science 270, 450-454. doi: 10.1126/science.270.5235.450.
    • (1995) Science , vol.270 , pp. 450-454
    • Stevens, T.O.1    McKinley, J.P.2
  • 51
    • 44649191875 scopus 로고    scopus 로고
    • Distinct form I, II, III, and IV Rubisco proteins from the three kingdoms of life provide clues about Rubisco evolution and structure/function relationships
    • Tabita, F. R., Satagopan, S., Hanson, T. E., Kreel, N. E., and Scott, S. S. (2008). Distinct form I, II, III, and IV Rubisco proteins from the three kingdoms of life provide clues about Rubisco evolution and structure/function relationships. J. Exp. Bot. 59, 1515-1524. doi: 10.1093/jxb/erm361.
    • (2008) J. Exp. Bot , vol.59 , pp. 1515-1524
    • Tabita, F.R.1    Satagopan, S.2    Hanson, T.E.3    Kreel, N.E.4    Scott, S.S.5
  • 53
    • 63849207489 scopus 로고    scopus 로고
    • Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
    • Ward, N. L., Challacombe, J. F., Janssen, P. H., Henrissat, B., Coutinho, P. M., Wu, M., et al. (2009). Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl. Environ. Microbiol. 75, 2046-2056. doi: 10.1128/AEM.02294-08.
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 2046-2056
    • Ward, N.L.1    Challacombe, J.F.2    Janssen, P.H.3    Henrissat, B.4    Coutinho, P.M.5    Wu, M.6
  • 54
    • 77955251806 scopus 로고    scopus 로고
    • Distribution and diversity of carbon monoxide-oxidizing bacteria and bulk bacterial communities across a succession gradient on a Hawaiian volcanic deposit
    • Weber, C. F., and King, G. M. (2010). Distribution and diversity of carbon monoxide-oxidizing bacteria and bulk bacterial communities across a succession gradient on a Hawaiian volcanic deposit. Environ. Microbiol. 12, 1855-1867. doi: 10.1111/j.1462-2920.2010.02190.x.
    • (2010) Environ. Microbiol , vol.12 , pp. 1855-1867
    • Weber, C.F.1    King, G.M.2
  • 55
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan, S., and Goldman, N. (2001). A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 18, 691-699. doi: 10.1093/oxfordjournals.molbev.a003851.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 57
    • 62649155346 scopus 로고    scopus 로고
    • Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
    • Wu, D., Raymond, J., Wu, M., Chatterji, S., Ren, Q. H., Graham, J. E., et al. (2009). Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. PLoS ONE 4:e4207. doi: 10.1371/journal.pone.0004207.
    • (2009) PLoS ONE , vol.4
    • Wu, D.1    Raymond, J.2    Wu, M.3    Chatterji, S.4    Ren, Q.H.5    Graham, J.E.6


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