메뉴 건너뛰기




Volumn 12, Issue 2, 2016, Pages 109-116

Correlating chemical sensitivity and basal gene expression reveals mechanism of action

(27)  Rees, Matthew G a   Seashore Ludlow, Brinton a,c   Cheah, Jaime H a,d   Adams, Drew J a,e   Price, Edmund V a,c   Gill, Shubhroz a   Javaid, Sarah b   Coletti, Matthew E a   Jones, Victor L a   Bodycombe, Nicole E a,f   Soule, Christian K a,d   Alexander, Benjamin a   Li, Ava a   Montgomery, Philip a   Kotz, Joanne D a   Hon, C Suk Yee a   Munoz, Benito a   Liefeld, Ted a,g   Dancík, Vlado a   Haber, Daniel A b   more..


Author keywords

[No Author keywords available]

Indexed keywords

ACYL COENZYME A DESATURASE; CYTOTOXIC AGENT; FATTY ACID DESATURASE 2; ML 239; UNCLASSIFIED DRUG; AFLATOXIN; AUSTOCYSTIN D; MOLECULAR LIBRARY;

EID: 84955378277     PISSN: 15524450     EISSN: 15524469     Source Type: Journal    
DOI: 10.1038/nchembio.1986     Document Type: Article
Times cited : (578)

References (49)
  • 2
    • 84875458314 scopus 로고    scopus 로고
    • Target identification and mechanism of action in chemical biology and drug discovery
    • Schenone, M., Daník, V., Wagner, B.K. & Clemons, P.A. Target identification and mechanism of action in chemical biology and drug discovery. Nat. Chem. Biol. 9, 232-240 (2013).
    • (2013) Nat. Chem. Biol. , vol.9 , pp. 232-240
    • Schenone, M.1    Daník, V.2    Wagner, B.K.3    Clemons, P.A.4
  • 4
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102, 15545-15550 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 5
    • 0034616930 scopus 로고    scopus 로고
    • Functional discovery via a compendium of expression profiles
    • Hughes, T.R. et al. Functional discovery via a compendium of expression profiles. Cell 102, 109-126 (2000).
    • (2000) Cell , vol.102 , pp. 109-126
    • Hughes, T.R.1
  • 6
    • 33749335282 scopus 로고    scopus 로고
    • The Connectivity Map: Using gene-expression signatures to connect small molecules, genes, and disease
    • Lamb, J. et al. The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science 313, 1929-1935 (2006).
    • (2006) Science , vol.313 , pp. 1929-1935
    • Lamb, J.1
  • 7
    • 84859169877 scopus 로고    scopus 로고
    • The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
    • Barretina, J. et al. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature 483, 603-607 (2012).
    • (2012) Nature , vol.483 , pp. 603-607
    • Barretina, J.1
  • 8
    • 84883319024 scopus 로고    scopus 로고
    • An interactive resource to identify cancer genetic and lineage dependencies targeted by small molecules
    • Basu, A. et al. An interactive resource to identify cancer genetic and lineage dependencies targeted by small molecules. Cell 154, 1151-1161 (2013).
    • (2013) Cell , vol.154 , pp. 1151-1161
    • Basu, A.1
  • 9
    • 84859187259 scopus 로고    scopus 로고
    • Systematic identification of genomic markers of drug sensitivity in cancer cells
    • Garnett, M.J. et al. Systematic identification of genomic markers of drug sensitivity in cancer cells. Nature 483, 570-575 (2012).
    • (2012) Nature , vol.483 , pp. 570-575
    • Garnett, M.J.1
  • 10
    • 27544446054 scopus 로고    scopus 로고
    • Formation of 17-allylamino-demethoxygeldanamycin (17-AAG) hydroquinone by NAD(P)H:quinone oxidoreductase 1: Role of 17-AAG hydroquinone in heat shock protein 90 inhibition
    • Guo, W. et al. Formation of 17-allylamino-demethoxygeldanamycin (17-AAG) hydroquinone by NAD(P)H:quinone oxidoreductase 1: role of 17-AAG hydroquinone in heat shock protein 90 inhibition. Cancer Res. 65, 10006-10015 (2005).
    • (2005) Cancer Res , vol.65 , pp. 10006-10015
    • Guo, W.1
  • 11
    • 84882741504 scopus 로고    scopus 로고
    • Comparison and validation of genomic predictors for anticancer drug sensitivity
    • Papillon-Cavanagh, S. et al. Comparison and validation of genomic predictors for anticancer drug sensitivity. J. Am. Med. Inform. Assoc. 20, 597-602 (2013).
    • (2013) J. Am. Med. Inform. Assoc. , vol.20 , pp. 597-602
    • Papillon-Cavanagh, S.1
  • 12
    • 33749011163 scopus 로고    scopus 로고
    • The NCI60 human tumour cell line anticancer drug screen
    • Shoemaker, R.H. The NCI60 human tumour cell line anticancer drug screen. Nat. Rev. Cancer 6, 813-823 (2006).
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 813-823
    • Shoemaker, R.H.1
  • 13
    • 84890553061 scopus 로고    scopus 로고
    • Inconsistency in large pharmacogenomic studies
    • Haibe-Kains, B. et al. Inconsistency in large pharmacogenomic studies. Nature 504, 389-393 (2013).
    • (2013) Nature , vol.504 , pp. 389-393
    • Haibe-Kains, B.1
  • 14
    • 84902146673 scopus 로고    scopus 로고
    • Connecting small molecules with similar assay performance profiles leads to new biological hypotheses
    • Daník, V. et al. Connecting small molecules with similar assay performance profiles leads to new biological hypotheses. J. Biomol. Screen. 19, 771-781 (2014).
    • (2014) J. Biomol. Screen. , vol.19 , pp. 771-781
    • Daník, V.1
  • 15
    • 84908190419 scopus 로고    scopus 로고
    • NAMPT is the cellular target of STF-31-like small-molecule probes
    • Adams, D.J. et al. NAMPT is the cellular target of STF-31-like small-molecule probes. ACS Chem. Biol. 9, 2247-2254 (2014).
    • (2014) ACS Chem. Biol. , vol.9 , pp. 2247-2254
    • Adams, D.J.1
  • 16
    • 33745872296 scopus 로고    scopus 로고
    • Comparison of chemical inhibitors of antiapoptotic Bcl-2-family proteins
    • Zhai, D., Jin, C., Satterthwait, A.C. & Reed, J.C. Comparison of chemical inhibitors of antiapoptotic Bcl-2-family proteins. Cell Death Differ. 13, 1419-1421 (2006).
    • (2006) Cell Death Differ , vol.13 , pp. 1419-1421
    • Zhai, D.1    Jin, C.2    Satterthwait, A.C.3    Reed, J.C.4
  • 17
    • 84876515907 scopus 로고    scopus 로고
    • STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
    • Franceschini, A. et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 41, D808-D815 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. D808-D815
    • Franceschini, A.1
  • 18
    • 84900333477 scopus 로고    scopus 로고
    • Birinapant (TL32711), a bivalent SMAC mimetic, targets TRAF2-associated cIAPs, abrogates TNF-induced NF-B activation, and is active in patient-derived xenograft models
    • Benetatos, C.A. et al. Birinapant (TL32711), a bivalent SMAC mimetic, targets TRAF2-associated cIAPs, abrogates TNF-induced NF-B activation, and is active in patient-derived xenograft models. Mol. Cancer Ther. 13, 867-879 (2014).
    • (2014) Mol. Cancer Ther. , vol.13 , pp. 867-879
    • Benetatos, C.A.1
  • 19
    • 84866265444 scopus 로고    scopus 로고
    • Putative DNA/RNA helicase Schlafen-11 (SLFN11) sensitizes cancer cells to DNA-damaging agents
    • Zoppoli, G. et al. Putative DNA/RNA helicase Schlafen-11 (SLFN11) sensitizes cancer cells to DNA-damaging agents. Proc. Natl. Acad. Sci. USA 109, 15030-15035 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 15030-15035
    • Zoppoli, G.1
  • 20
    • 79955375912 scopus 로고    scopus 로고
    • The selectivity of austocystin D arises from cell-line-specific drug activation by cytochrome P450 enzymes
    • Marks, K.M. et al. The selectivity of austocystin D arises from cell-line-specific drug activation by cytochrome P450 enzymes. J. Nat. Prod. 74, 567-573 (2011).
    • (2011) J. Nat. Prod. , vol.74 , pp. 567-573
    • Marks, K.M.1
  • 21
    • 34547655500 scopus 로고    scopus 로고
    • Selective competitive and mechanism-based inhibitors of human cytochrome P450 2J2
    • Lafite, P., Dijols, S., Zeldin, D.C., Dansette, P.M. & Mansuy, D. Selective, competitive and mechanism-based inhibitors of human cytochrome P450 2J2. Arch. Biochem. Biophys. 464, 155-168 (2007).
    • (2007) Arch. Biochem. Biophys. , vol.464 , pp. 155-168
    • Lafite, P.1    Dijols, S.2    Zeldin, D.C.3    Dansette, P.M.4    Mansuy, D.5
  • 22
    • 84891022708 scopus 로고    scopus 로고
    • Dynamic chromatin modification sustains epithelial-mesenchymal transition following inducible expression of Snail-1
    • Javaid, S. et al. Dynamic chromatin modification sustains epithelial-mesenchymal transition following inducible expression of Snail-1. Cell Rep. 5, 1679-1689 (2013).
    • (2013) Cell Rep , vol.5 , pp. 1679-1689
    • Javaid, S.1
  • 23
    • 0033152250 scopus 로고    scopus 로고
    • Selective toxicity of the tricyclic thiophene NSC 652287 in renal carcinoma cell lines: Differential accumulation and metabolism
    • Rivera, M.I. et al. Selective toxicity of the tricyclic thiophene NSC 652287 in renal carcinoma cell lines: differential accumulation and metabolism. Biochem. Pharmacol. 57, 1283-1295 (1999).
    • (1999) Biochem. Pharmacol. , vol.57 , pp. 1283-1295
    • Rivera, M.I.1
  • 24
    • 33144464115 scopus 로고    scopus 로고
    • Human sulfotransferases and their role in chemical metabolism
    • Gamage, N. et al. Human sulfotransferases and their role in chemical metabolism. Toxicol. Sci. 90, 5-22 (2006).
    • (2006) Toxicol. Sci. , vol.90 , pp. 5-22
    • Gamage, N.1
  • 25
    • 84863497969 scopus 로고    scopus 로고
    • The survivin suppressants" NSC 80467 and YM155 induce a DNA damage response
    • Glaros, T.G. et al. The "survivin suppressants" NSC 80467 and YM155 induce a DNA damage response. Cancer Chemother. Pharmacol. 70, 207-212 (2012).
    • (2012) Cancer Chemother. Pharmacol. , vol.70 , pp. 207-212
    • Glaros, T.G.1
  • 26
    • 34548574823 scopus 로고    scopus 로고
    • YM155, a novel small-molecule survivin suppressant, induces regression of established human hormone-refractory prostate tumor xenografts
    • Nakahara, T. et al. YM155, a novel small-molecule survivin suppressant, induces regression of established human hormone-refractory prostate tumor xenografts. Cancer Res. 67, 8014-8021 (2007).
    • (2007) Cancer Res , vol.67 , pp. 8014-8021
    • Nakahara, T.1
  • 27
    • 84906303888 scopus 로고    scopus 로고
    • The solute carrier SLC35F2 enables YM155-mediated DNA damage toxicity
    • Winter, G.E. et al. The solute carrier SLC35F2 enables YM155-mediated DNA damage toxicity. Nat. Chem. Biol. 10, 768-773 (2014).
    • (2014) Nat. Chem. Biol. , vol.10 , pp. 768-773
    • Winter, G.E.1
  • 28
    • 12144251786 scopus 로고    scopus 로고
    • P-glycoprotein plays a role in the oral absorption of BMS-387032, a potent cyclin-dependent kinase 2 inhibitor, in rats
    • Kamath, A.V., Chong, S., Chang, M. & Marathe, P.H. P-glycoprotein plays a role in the oral absorption of BMS-387032, a potent cyclin-dependent kinase 2 inhibitor, in rats. Cancer Chemother. Pharmacol. 55, 110-116 (2005).
    • (2005) Cancer Chemother. Pharmacol. , vol.55 , pp. 110-116
    • Kamath, A.V.1    Chong, S.2    Chang, M.3    Marathe, P.H.4
  • 29
    • 0033038623 scopus 로고    scopus 로고
    • Expression of multidrug resistance protein-related genes in lung cancer: Correlation with drug response
    • Young, L.C. et al. Expression of multidrug resistance protein-related genes in lung cancer: correlation with drug response. Clin. Cancer Res. 5, 673-680 (1999).
    • (1999) Clin. Cancer Res. , vol.5 , pp. 673-680
    • Young, L.C.1
  • 30
    • 84878026528 scopus 로고    scopus 로고
    • Discovery of small-molecule enhancers of reactive oxygen species that are nontoxic or cause genotype-selective cell death
    • Adams, D.J. et al. Discovery of small-molecule enhancers of reactive oxygen species that are nontoxic or cause genotype-selective cell death. ACS Chem. Biol. 8, 923-929 (2013).
    • (2013) ACS Chem. Biol. , vol.8 , pp. 923-929
    • Adams, D.J.1
  • 31
    • 57749087828 scopus 로고    scopus 로고
    • Selective blockade of 2-arachidonoylglycerol hydrolysis produces cannabinoid behavioral effects
    • Long, J.Z. et al. Selective blockade of 2-arachidonoylglycerol hydrolysis produces cannabinoid behavioral effects. Nat. Chem. Biol. 5, 37-44 (2009).
    • (2009) Nat. Chem. Biol. , vol.5 , pp. 37-44
    • Long, J.Z.1
  • 32
    • 73149109062 scopus 로고    scopus 로고
    • Monoacylglycerol lipase regulates a fatty acid network that promotes cancer pathogenesis
    • Nomura, D.K. et al. Monoacylglycerol lipase regulates a fatty acid network that promotes cancer pathogenesis. Cell 140, 49-61 (2010).
    • (2010) Cell , vol.140 , pp. 49-61
    • Nomura, D.K.1
  • 33
    • 84860459370 scopus 로고    scopus 로고
    • Identification of a selective small molecule inhibitor of breast cancer stem cells
    • Germain, A.R. et al. Identification of a selective small molecule inhibitor of breast cancer stem cells. Bioorg. Med. Chem. Lett. 22, 3571-3574 (2012).
    • (2012) Bioorg. Med. Chem. Lett. , vol.22 , pp. 3571-3574
    • Germain, A.R.1
  • 34
    • 63049123066 scopus 로고    scopus 로고
    • Transitions between epithelial and mesenchymal states: Acquisition of malignant and stem cell traits
    • Polyak, K. & Weinberg, R.A. Transitions between epithelial and mesenchymal states: acquisition of malignant and stem cell traits. Nat. Rev. Cancer 9, 265-273 (2009).
    • (2009) Nat. Rev. Cancer , vol.9 , pp. 265-273
    • Polyak, K.1    Weinberg, R.A.2
  • 35
    • 77957262381 scopus 로고    scopus 로고
    • Core epithelial-to-mesenchymal transition interactome gene-expression signature is associated with claudin-low and metaplastic breast cancer subtypes
    • Taube, J.H. et al. Core epithelial-to-mesenchymal transition interactome gene-expression signature is associated with claudin-low and metaplastic breast cancer subtypes. Proc. Natl. Acad. Sci. USA 107, 15449-15454 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 15449-15454
    • Taube, J.H.1
  • 36
    • 0034686664 scopus 로고    scopus 로고
    • Metabolism of highly unsaturated n-3 and n-6 fatty acids
    • Sprecher, H. Metabolism of highly unsaturated n-3 and n-6 fatty acids. Biochim. Biophys. Acta 1486, 219-231 (2000).
    • (2000) Biochim. Biophys. Acta , vol.1486 , pp. 219-231
    • Sprecher, H.1
  • 37
    • 0032055203 scopus 로고    scopus 로고
    • Identification and characterization of a novel delta6/delta5 fatty acid desaturase inhibitor as a potential anti-inflammatory agent
    • Obukowicz, M.G. et al. Identification and characterization of a novel delta6/delta5 fatty acid desaturase inhibitor as a potential anti-inflammatory agent. Biochem. Pharmacol. 55, 1045-1058 (1998).
    • (1998) Biochem. Pharmacol. , vol.55 , pp. 1045-1058
    • Obukowicz, M.G.1
  • 38
    • 57249095767 scopus 로고    scopus 로고
    • Lipid peroxidation of membrane phospholipids generates hydroxy-alkenals and oxidized phospholipids active in physiological and/or pathological conditions
    • Catalá, A. Lipid peroxidation of membrane phospholipids generates hydroxy-alkenals and oxidized phospholipids active in physiological and/or pathological conditions. Chem. Phys. Lipids 157, 1-11 (2009).
    • (2009) Chem. Phys. Lipids , vol.157 , pp. 1-11
    • Catalá, A.1
  • 39
    • 35448942815 scopus 로고    scopus 로고
    • Ether-linked lipids and their bioactive species
    • (eds. Vance, D.E. & Vance, J.E.) Elsevier
    • Snyder, F., Lee, T. & Wykle, R.L. Ether-linked lipids and their bioactive species. in Biochemistry of Lipids, Lipoproteins, and Membranes edn. 4 (eds. Vance, D.E. & Vance, J.E.) 233-262 (Elsevier, 2002).
    • (2002) Biochemistry of Lipids Lipoproteins, and Membranes Edn , vol.4 , pp. 233-262
    • Snyder, F.1    Lee, T.2    Wykle, R.L.3
  • 40
    • 84892685001 scopus 로고    scopus 로고
    • Regulation of ferroptotic cancer cell death by GPX4
    • Yang, W.S. et al. Regulation of ferroptotic cancer cell death by GPX4. Cell 156, 317-331 (2014).
    • (2014) Cell , vol.156 , pp. 317-331
    • Yang, W.S.1
  • 41
    • 82355193795 scopus 로고    scopus 로고
    • FADS2 function loss at the cancer hotspot 11q13 locus diverts lipid signaling precursor synthesis to unusual eicosanoid fatty acids
    • Park, W.J., Kothapalli, K.S., Lawrence, P. & Brenna, J.T. FADS2 function loss at the cancer hotspot 11q13 locus diverts lipid signaling precursor synthesis to unusual eicosanoid fatty acids. PLoS One 6, e28186 (2011).
    • (2011) PLoS One , vol.6 , pp. e28186
    • Park, W.J.1    Kothapalli, K.S.2    Lawrence, P.3    Brenna, J.T.4
  • 42
    • 84896722338 scopus 로고    scopus 로고
    • Epithelial-to-mesenchymal transition rewires the molecular path to PI3K-dependent proliferation
    • Salt, M.B., Bandyopadhyay, S. & McCormick, F. Epithelial-to-mesenchymal transition rewires the molecular path to PI3K-dependent proliferation. Cancer Discov. 4, 186-199 (2014).
    • (2014) Cancer Discov , vol.4 , pp. 186-199
    • Salt, M.B.1    Bandyopadhyay, S.2    McCormick, F.3
  • 43
    • 84871998076 scopus 로고    scopus 로고
    • An epithelial-mesenchymal transition gene signature predicts resistance to EGFR and PI3K inhibitors and identifies Axl as a therapeutic target for overcoming EGFR inhibitor resistance
    • Byers, L.A. et al. An epithelial-mesenchymal transition gene signature predicts resistance to EGFR and PI3K inhibitors and identifies Axl as a therapeutic target for overcoming EGFR inhibitor resistance. Clin. Cancer Res. 19, 279-290 (2013).
    • (2013) Clin. Cancer Res. , vol.19 , pp. 279-290
    • Byers, L.A.1
  • 44
    • 84905568369 scopus 로고    scopus 로고
    • Structure of the DDB1-CRBN E3 ubiquitin ligase in complex with thalidomide
    • Fischer, E.S. et al. Structure of the DDB1-CRBN E3 ubiquitin ligase in complex with thalidomide. Nature 512, 49-53 (2014).
    • (2014) Nature , vol.512 , pp. 49-53
    • Fischer, E.S.1
  • 45
    • 84903761687 scopus 로고    scopus 로고
    • Opposing effects of target overexpression reveal drug mechanisms
    • Palmer, A.C. & Kishony, R. Opposing effects of target overexpression reveal drug mechanisms. Nat. Commun. 5, 4296 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 4296
    • Palmer, A.C.1    Kishony, R.2
  • 47
    • 84925867952 scopus 로고    scopus 로고
    • Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies
    • Cowley, G.S. et al. Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies. Sci. Data 1, 140035 (2014).
    • (2014) Sci. Data , vol.1 , pp. 140035
    • Cowley, G.S.1
  • 48
    • 66749159294 scopus 로고    scopus 로고
    • Selective inhibitors of CYP2J2 related to terfenadine exhibit strong activity against human cancers in vitro and in vivo
    • Chen, C. et al. Selective inhibitors of CYP2J2 related to terfenadine exhibit strong activity against human cancers in vitro and in vivo. J. Pharmacol. Exp. Ther. 329, 908-918 (2009).
    • (2009) J. Pharmacol. Exp. Ther. , vol.329 , pp. 908-918
    • Chen, C.1
  • 49
    • 79960987021 scopus 로고    scopus 로고
    • A public genome-scale lentiviral expression library of human ORFs
    • Yang, X. et al. A public genome-scale lentiviral expression library of human ORFs. Nat. Methods 8, 659-661 (2011).
    • (2011) Nat. Methods , vol.8 , pp. 659-661
    • Yang, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.