-
1
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H, (1974) A new look at the statistical model identification. Automatic Control, IEEE Transactions on, 19, 716-723
-
(1974)
Automatic Control, IEEE Transactions on
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
0030218918
-
The genetics of pigmentation: From fancy genes to complex traits
-
Barsh GS, (1996) The genetics of pigmentation: from fancy genes to complex traits. Trends in Genetics, 12, 299-305
-
(1996)
Trends in Genetics
, vol.12
, pp. 299-305
-
-
Barsh, G.S.1
-
3
-
-
0036107298
-
Effects of body size and melanism on the thermal biology of garter snakes
-
Bittner TD, King RB, Kerfin JM, Gatten RE, (2002) Effects of body size and melanism on the thermal biology of garter snakes. Copeia, 2002, 477-482
-
(2002)
Copeia
, vol.2002
, pp. 477-482
-
-
Bittner, T.D.1
King, R.B.2
Kerfin, J.M.3
Gatten, R.E.4
-
4
-
-
35348817330
-
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
-
Browning SR, Browning BL, (2007) Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. The American Journal of Human Genetics, 81, 1084-1097
-
(2007)
The American Journal of Human Genetics
, vol.81
, pp. 1084-1097
-
-
Browning, S.R.1
Browning, B.L.2
-
5
-
-
13544273972
-
The adaptive significance of coloration in mammals
-
Caro TIM, (2005) The adaptive significance of coloration in mammals. BioScience, 55, 125-136
-
(2005)
BioScience
, vol.55
, pp. 125-136
-
-
Caro, T.I.M.1
-
6
-
-
74549118236
-
Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer
-
Chan YF, Marks ME, Jones FC, et al. (2010) Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science, 327, 302-305
-
(2010)
Science
, vol.327
, pp. 302-305
-
-
Chan, Y.F.1
Marks, M.E.2
Jones, F.C.3
-
8
-
-
0009995933
-
The life history of the southern spiny lizard, Sceloporus undulates undulates Latreille
-
Crenshaw JW, (1955) The life history of the southern spiny lizard, Sceloporus undulates undulates Latreille. The American Midland Naturalist, 54, 257-298
-
(1955)
The American Midland Naturalist
, vol.54
, pp. 257-298
-
-
Crenshaw, J.W.1
-
9
-
-
84890265468
-
The impact of equilibrium assumptions on tests of selection
-
Crisci JL, Poh Y, Mahajan S, Jensen JD, (2013) The impact of equilibrium assumptions on tests of selection. Frontiers in Genetics, 4, 235
-
(2013)
Frontiers in Genetics
, vol.4
, pp. 235
-
-
Crisci, J.L.1
Poh, Y.2
Mahajan, S.3
Jensen, J.D.4
-
10
-
-
84861153207
-
Abc: An R package for approximate Bayesian computation (ABC)
-
Csillery K, Francois O, Blum MGB, (2012) abc: an R package for approximate Bayesian computation (ABC). Methods in Ecology & Evolution, 3, 475-479
-
(2012)
Methods in Ecology & Evolution
, vol.3
, pp. 475-479
-
-
Csillery, K.1
Francois, O.2
Blum, M.G.B.3
-
11
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek P, Auton A, Abecasis G, et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156-2158
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
-
12
-
-
0003918265
-
-
University of New Mexico Press, Albuquerque, New Mexico
-
Degenhardt WG, Painter CW, Price AH, (1996) Amphibians and Reptiles of New Mexico. University of New Mexico Press, Albuquerque, New Mexico
-
(1996)
Amphibians and Reptiles of New Mexico
-
-
Degenhardt, W.G.1
Painter, C.W.2
Price, A.H.3
-
13
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo M, Banks E, Poplin R, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature Genetics, 43, 491-498
-
(2011)
Nature Genetics
, vol.43
, pp. 491-498
-
-
DePristo, M.1
Banks, E.2
Poplin, R.3
-
14
-
-
0013584203
-
Effectiveness of selection by owls of deer mice (Peromyscus maniculatus) which contrast in color with their background
-
Dice LR, (1947) Effectiveness of selection by owls of deer mice (Peromyscus maniculatus) which contrast in color with their background. Contributions from the Laboratory of Vertebrate Biology of the University of Michigan 34: 1-20
-
(1947)
Contributions from the Laboratory of Vertebrate Biology of the University of Michigan
, vol.34
, pp. 1-20
-
-
Dice, L.R.1
-
15
-
-
10944265010
-
The genetics of maize evolution
-
Doebley J, (2004) The genetics of maize evolution. Annual Reviews of Genetics, 38, 37-59
-
(2004)
Annual Reviews of Genetics
, vol.38
, pp. 37-59
-
-
Doebley, J.1
-
16
-
-
85027943601
-
Evidence of adaptation from ancestral variation in young populations of beach mice
-
Domingues VS, Poh Y-P, Peterson BK, Pennings PS, Jensen JD, Hoekstra HE, (2012) Evidence of adaptation from ancestral variation in young populations of beach mice. Evolution, 66, 3209-3223
-
(2012)
Evolution
, vol.66
, pp. 3209-3223
-
-
Domingues, V.S.1
Poh, Y.-P.2
Peterson, B.K.3
Pennings, P.S.4
Jensen, J.D.5
Hoekstra, H.E.6
-
17
-
-
0037418588
-
Molecular genetics and evolution of melanism in the cat family
-
Eizirik E, Yuhki N, Johnson WE, Menotti-Raymond M, Hannah SS, O'Brien SJ, (2003) Molecular genetics and evolution of melanism in the cat family. Current Biology, 13, 448-453
-
(2003)
Current Biology
, vol.13
, pp. 448-453
-
-
Eizirik, E.1
Yuhki, N.2
Johnson, W.E.3
Menotti-Raymond, M.4
Hannah, S.S.5
O'Brien, S.J.6
-
18
-
-
40749097777
-
Genetic basis of fitness differences in natural populations
-
Ellegren H, Sheldon BC, (2008) Genetic basis of fitness differences in natural populations. Nature, 452, 169-175
-
(2008)
Nature
, vol.452
, pp. 169-175
-
-
Ellegren, H.1
Sheldon, B.C.2
-
19
-
-
21244479740
-
Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
-
Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 261126-20
-
(2005)
Molecular Ecology
, vol.14
, pp. 261126-261120
-
-
Evanno, G.1
Regnaut, S.2
Goudet, J.3
-
20
-
-
77955381733
-
MSMS: A coalescent simulation program including recombination, demographic structure and selection at a single locus
-
Ewing G, Hermisson J, (2010) MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus. Bioinformatics, 26, 2064-2065
-
(2010)
Bioinformatics
, vol.26
, pp. 2064-2065
-
-
Ewing, G.1
Hermisson, J.2
-
21
-
-
79954469204
-
Fastsimcoal: A continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
-
Excoffier L, Foll M, (2011) fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27, 1332-1334
-
(2011)
Bioinformatics
, vol.27
, pp. 1332-1334
-
-
Excoffier, L.1
Foll, M.2
-
22
-
-
84887312794
-
Robust demographic inference from genomic and SNP data
-
Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M, (2013) Robust demographic inference from genomic and SNP data. PLoS Genetics, 9, e1003905
-
(2013)
PLoS Genetics
, vol.9
, pp. e1003905
-
-
Excoffier, L.1
Dupanloup, I.2
Huerta-Sánchez, E.3
Sousa, V.C.4
Foll, M.5
-
23
-
-
0041817568
-
Inference of population structure: Extensions to linked loci and correlated allele frequencies
-
Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure: extensions to linked loci and correlated allele frequencies. Genetics, 164, 1567-1587
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
24
-
-
34447120219
-
Inference of population structure using multilocus genotype data: Dominant markers and null alleles
-
Falush D, Stephens M, Pritchard JK, (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes, 7, 574-578
-
(2007)
Molecular Ecology Notes
, vol.7
, pp. 574-578
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
25
-
-
73449149044
-
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
-
Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD, (2009) Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genetics, 5, e1000695
-
(2009)
PLoS Genetics
, vol.5
, pp. e1000695
-
-
Gutenkunst, R.N.1
Hernandez, R.D.2
Williamson, S.H.3
Bustamante, C.D.4
-
26
-
-
33745911143
-
A single amino acid mutation contributes to adaptive beach mouse color pattern
-
Hoekstra HE, Hirschmann RJ, Bundey RA, Insel PA, Crossland JP, (2006) A single amino acid mutation contributes to adaptive beach mouse color pattern. Science, 313, 101-104
-
(2006)
Science
, vol.313
, pp. 101-104
-
-
Hoekstra, H.E.1
Hirschmann, R.J.2
Bundey, R.A.3
Insel, P.A.4
Crossland, J.P.5
-
27
-
-
68949103876
-
Inferring weak population structure with the assistance of sample group information
-
Hubisz MJ, Falush D, Stephens M, Pritchard JK, (2009) Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources, 9, 1322-1332
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 1322-1332
-
-
Hubisz, M.J.1
Falush, D.2
Stephens, M.3
Pritchard, J.K.4
-
28
-
-
33644926428
-
An analysis of signatures of selective sweeps in natural populations of the house mouse
-
Ihle S, Ravaoarimanana I, Thomas M, Tautz D, (2006) An analysis of signatures of selective sweeps in natural populations of the house mouse. Molecular Biology & Evolution, 23, 790-797
-
(2006)
Molecular Biology & Evolution
, vol.23
, pp. 790-797
-
-
Ihle, S.1
Ravaoarimanana, I.2
Thomas, M.3
Tautz, D.4
-
29
-
-
84915790248
-
On the unfounded enthusiasm for soft selective sweeps
-
Jensen JD, (2014) On the unfounded enthusiasm for soft selective sweeps. Nature Communications, 5, 5281
-
(2014)
Nature Communications
, vol.5
, pp. 5281
-
-
Jensen, J.D.1
-
30
-
-
23344438911
-
Distinguishing between selective sweeps and demography using DNA polymorphism data
-
Jensen JD, Kim Y, DuMont VB, Aquadro CF, Bustamante CD, (2005) Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics, 170, 1401-1410
-
(2005)
Genetics
, vol.170
, pp. 1401-1410
-
-
Jensen, J.D.1
Kim, Y.2
DuMont, V.B.3
Aquadro, C.F.4
Bustamante, C.D.5
-
31
-
-
35748983523
-
Approaches for identifying targets of positive selection
-
Jensen JD, Wong A, Aquadro CF, (2007) Approaches for identifying targets of positive selection. Trends in Genetics, 23, 568-577
-
(2007)
Trends in Genetics
, vol.23
, pp. 568-577
-
-
Jensen, J.D.1
Wong, A.2
Aquadro, C.F.3
-
32
-
-
0001703321
-
Adaptive coloration in Peromyscus polionotus: Experimental selection by owls
-
Kaufman DW, (1974) Adaptive coloration in Peromyscus polionotus: Experimental selection by owls. Journal of Mammalogy, 55, 271-283
-
(1974)
Journal of Mammalogy
, vol.55
, pp. 271-283
-
-
Kaufman, D.W.1
-
34
-
-
0031737430
-
Melanocortin receptor 1 (MC1R) mutations and coat color in pigs
-
Kijas JMH, Wales R, Tornsten A, Chardon P, Moller M, Andersson L, (1998) Melanocortin receptor 1 (MC1R) mutations and coat color in pigs. Genetics, 150, 1177-1185
-
(1998)
Genetics
, vol.150
, pp. 1177-1185
-
-
Kijas, J.M.H.1
Wales, R.2
Tornsten, A.3
Chardon, P.4
Moller, M.5
Andersson, L.6
-
35
-
-
0036189827
-
Detecting a local signature of genetic hitchhiking along a recombining chromosome
-
Kim Y, Stephan W, (2002) Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics, 160, 765-777
-
(2002)
Genetics
, vol.160
, pp. 765-777
-
-
Kim, Y.1
Stephan, W.2
-
36
-
-
34147112820
-
White Sands Dune Field, New Mexico: Age, dune dynamics and recent accumulations
-
Kocurek G, Carr M, Ewing R, Havholm KG, Nagar YC, Singhvi AK, (2007) White Sands Dune Field, New Mexico: age, dune dynamics and recent accumulations. Sedimentary Geology, 197, 313-331
-
(2007)
Sedimentary Geology
, vol.197
, pp. 313-331
-
-
Kocurek, G.1
Carr, M.2
Ewing, R.3
Havholm, K.G.4
Nagar, Y.C.5
Singhvi, A.K.6
-
37
-
-
0037249079
-
The Holocene history of the White Sands dune field and influences on eolian deflation and playa lakes
-
Langford RP, (2003) The Holocene history of the White Sands dune field and influences on eolian deflation and playa lakes. Quaternary International, 104, 31-39
-
(2003)
Quaternary International
, vol.104
, pp. 31-39
-
-
Langford, R.P.1
-
38
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078
-
(2009)
Bioinformatics
, vol.25
, pp. 2078
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
39
-
-
84874963219
-
Adaptive evolution of multiple traits through multiple mutations at a single gene
-
Linnen CR, Poh Y-P, Peterson BK, et al. (2013) Adaptive evolution of multiple traits through multiple mutations at a single gene. Science, 339, 6125
-
(2013)
Science
, vol.339
, pp. 6125
-
-
Linnen, C.R.1
Poh, Y.-P.2
Peterson, B.K.3
-
40
-
-
0000776122
-
A subspecies of the lizard Sceloporus undulates from the White Sands of New Mexico
-
Lowe CH, Norris KS, (1956) A subspecies of the lizard Sceloporus undulates from the White Sands of New Mexico. Herpetologica, 12, 125-127
-
(1956)
Herpetologica
, vol.12
, pp. 125-127
-
-
Lowe, C.H.1
Norris, K.S.2
-
42
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter G, Goodson M, (2011) Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Research, 21, 936
-
(2011)
Genome Research
, vol.21
, pp. 936
-
-
Lunter, G.1
Goodson, M.2
-
43
-
-
67651108806
-
The genetics of quantitative traits: Challenges and prospects
-
Mackay TFC, Stone EA, Aryoles JF, (2009) The genetics of quantitative traits: challenges and prospects. Nature Reviews Genetics, 10, 565-577
-
(2009)
Nature Reviews Genetics
, vol.10
, pp. 565-577
-
-
Mackay, T.F.C.1
Stone, E.A.2
Aryoles, J.F.3
-
44
-
-
80054913451
-
FLASH: Fast length adjustment of short reads to improve genomic assemblies
-
Magoc T, Salzberg SL, (2011) FLASH: fast length adjustment of short reads to improve genomic assemblies. Bioinformatics, 27, 2957-2963
-
(2011)
Bioinformatics
, vol.27
, pp. 2957-2963
-
-
Magoc, T.1
Salzberg, S.L.2
-
46
-
-
0030337794
-
A missense mutation in the gene for melanocyte-stimulating hormone receptor (MCIR) is associated with the chestnut coat color in horses
-
Marklund L, Moller MJ, Sandberg K, Andersson L, (1996) A missense mutation in the gene for melanocyte-stimulating hormone receptor (MCIR) is associated with the chestnut coat color in horses. Mammalian Genome, 7, 895-899
-
(1996)
Mammalian Genome
, vol.7
, pp. 895-899
-
-
Marklund, L.1
Moller, M.J.2
Sandberg, K.3
Andersson, L.4
-
47
-
-
84941008791
-
Evaluating the ability of the pairwise joint site frequency spectrum to co-estimate selection and demography
-
Mathew LA, Jensen JD, (2015) Evaluating the ability of the pairwise joint site frequency spectrum to co-estimate selection and demography. Frontiers Genetics, 6, 268
-
(2015)
Frontiers Genetics
, vol.6
, pp. 268
-
-
Mathew, L.A.1
Jensen, J.D.2
-
48
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Maynard Smith J, Haigh J, (1974) The hitch-hiking effect of a favourable gene. Genetic Research, 23, 23-35
-
(1974)
Genetic Research
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.1
Haigh, J.2
-
49
-
-
77956295988
-
The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, Hanna M, Banks E, et al. (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20, 1297
-
(2010)
Genome Research
, vol.20
, pp. 1297
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
-
50
-
-
5144229755
-
Identification of a locus under complex positive selection in Drosophila simulans by haplotype mapping and composite-likelihood estimation
-
Meiklejohn CD, Kim Y, Hartl DL, Parsch J, (2004) Identification of a locus under complex positive selection in Drosophila simulans by haplotype mapping and composite-likelihood estimation. Genetics, 168, 265-279
-
(2004)
Genetics
, vol.168
, pp. 265-279
-
-
Meiklejohn, C.D.1
Kim, Y.2
Hartl, D.L.3
Parsch, J.4
-
51
-
-
1642300825
-
Conserved genetic basis of a quantitative plumage trait involved in mate choice
-
Mundy NI, Badcock NS, Hart T, Scribner K, Janssen K, Nadeau NJ, (2004) Conserved genetic basis of a quantitative plumage trait involved in mate choice. Science, 303, 1870-1873
-
(2004)
Science
, vol.303
, pp. 1870-1873
-
-
Mundy, N.I.1
Badcock, N.S.2
Hart, T.3
Scribner, K.4
Janssen, K.5
Nadeau, N.J.6
-
52
-
-
0037965834
-
The genetic basis of adaptive melanism in pocket mice
-
Nachman MW, Hoekstra HE, D'Agostino SL, (2003) The genetic basis of adaptive melanism in pocket mice. Proceedings of the National Academy of Sciences, USA, 100, 5268-5273
-
(2003)
Proceedings of the National Academy of Sciences, USA
, vol.100
, pp. 5268-5273
-
-
Nachman, M.W.1
Hoekstra, H.E.2
D'Agostino, S.L.3
-
53
-
-
79959662697
-
Jaatha: A fast composite-likelihood approach to estimate demographic parameters
-
Naduvilezhath L, Rose LE, Metzler D, (2011) Jaatha: a fast composite-likelihood approach to estimate demographic parameters. Molecular Ecology, 20, 2709-2723
-
(2011)
Molecular Ecology
, vol.20
, pp. 2709-2723
-
-
Naduvilezhath, L.1
Rose, L.E.2
Metzler, D.3
-
54
-
-
0033961998
-
Melanocortin 1 receptor variation in the domestic dog
-
Newton JM, Wilkie AL, He L, et al. (2000) Melanocortin 1 receptor variation in the domestic dog. Mammalian Genome, 11, 24-30
-
(2000)
Mammalian Genome
, vol.11
, pp. 24-30
-
-
Newton, J.M.1
Wilkie, A.L.2
He, L.3
-
55
-
-
27544437635
-
Genomic scans for selective sweeps using SNP data
-
Nielsen R, Williamson S, Kim Y, Hubisz MJ, Clark AG, Bustamante C, (2005) Genomic scans for selective sweeps using SNP data. Genome Research, 15, 1566-1575
-
(2005)
Genome Research
, vol.15
, pp. 1566-1575
-
-
Nielsen, R.1
Williamson, S.2
Kim, Y.3
Hubisz, M.J.4
Clark, A.G.5
Bustamante, C.6
-
56
-
-
79956314887
-
Genotype and SNP calling from next-generation sequencing data
-
Nielsen R, Paul JS, Albrechtsen A, Song YS, (2011) Genotype and SNP calling from next-generation sequencing data. Nature Reviews Genetics, 12, 443-451
-
(2011)
Nature Reviews Genetics
, vol.12
, pp. 443-451
-
-
Nielsen, R.1
Paul, J.S.2
Albrechtsen, A.3
Song, Y.S.4
-
57
-
-
0002036844
-
Color adaptation in desert reptiles and its thermal relationships
-
(ed. Milstead W.W.), University of Missouri Press, Columbia, Missouri
-
Norris KS, (1967) Color adaptation in desert reptiles and its thermal relationships. In: Lizard Ecology: A Symposium (ed., Milstead WW,), pp. 162-229. University of Missouri Press, Columbia, Missouri
-
(1967)
Lizard Ecology: A Symposium
, pp. 162-229
-
-
Norris, K.S.1
-
58
-
-
0000028875
-
An analysis of background color-matching in amphibians and reptiles
-
Norris KS, Lowe CH, (1964) An analysis of background color-matching in amphibians and reptiles. Ecology, 45, 565-580
-
(1964)
Ecology
, vol.45
, pp. 565-580
-
-
Norris, K.S.1
Lowe, C.H.2
-
59
-
-
84869237644
-
Crossing the threshold: Gene flow, dominance, and the critical level of standing genetic variation required for adaptation to novel environments
-
Nuismer SL, MacPherson A, Rosenblum EB, (2012) Crossing the threshold: gene flow, dominance, and the critical level of standing genetic variation required for adaptation to novel environments. Journal of Evolutionary Biology, 25, 2665-2671
-
(2012)
Journal of Evolutionary Biology
, vol.25
, pp. 2665-2671
-
-
Nuismer, S.L.1
MacPherson, A.2
Rosenblum, E.B.3
-
60
-
-
84928684159
-
Model-based approach to test hard polytomies in the Eulaemus clade of the most diverse South American lizard genus Liolaemus (Liolaemini, Squamata)
-
Olave M, Avila LJ, Sites JW, Morando M, (2015) Model-based approach to test hard polytomies in the Eulaemus clade of the most diverse South American lizard genus Liolaemus (Liolaemini, Squamata). Zoological Journal of the Linnean Society, 174, 169-184
-
(2015)
Zoological Journal of the Linnean Society
, vol.174
, pp. 169-184
-
-
Olave, M.1
Avila, L.J.2
Sites, J.W.3
Morando, M.4
-
61
-
-
0035109378
-
Haldane's sieve and adaptation from the standing genetic variation
-
Orr HA, Betancourt AJ, (2001) Haldane's sieve and adaptation from the standing genetic variation. Genetics, 157, 875-884
-
(2001)
Genetics
, vol.157
, pp. 875-884
-
-
Orr, H.A.1
Betancourt, A.J.2
-
62
-
-
84866933213
-
A critical assessment of storytelling: Gene ontology categories and the importance of validating genomic scans
-
Pavlidis P, Jensen JD, Stephan W, Stamatakis A, (2012) A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans. Molecular Biology & Evolution, 29, 3237-3248
-
(2012)
Molecular Biology & Evolution
, vol.29
, pp. 3237-3248
-
-
Pavlidis, P.1
Jensen, J.D.2
Stephan, W.3
Stamatakis, A.4
-
63
-
-
84883252048
-
SweeD: Likelihood-based detection of selective sweeps in thousands of genomes
-
Pavlidis P, Zivkovic D, Stamatakis A, Alachiotis N, (2013) SweeD: likelihood-based detection of selective sweeps in thousands of genomes. Molecular Biology & Evolution, 30, 2224-2234
-
(2013)
Molecular Biology & Evolution
, vol.30
, pp. 2224-2234
-
-
Pavlidis, P.1
Zivkovic, D.2
Stamatakis, A.3
Alachiotis, N.4
-
64
-
-
84911939982
-
On the prospect of identifying adaptive loci in recently bottlenecked populations
-
Poh Y-P, Domingues VS, Hoekstra HE, Jensen JD, (2014) On the prospect of identifying adaptive loci in recently bottlenecked populations. PLoS ONE, 9, e110579
-
(2014)
PLoS ONE
, vol.9
, pp. e110579
-
-
Poh, Y.-P.1
Domingues, V.S.2
Hoekstra, H.E.3
Jensen, J.D.4
-
65
-
-
28844443820
-
Selective sweep mapping of genes with large phenotypic effects
-
Pollinger JP, Bustamante CD, Fledel-Alon A, Schmutz S, Gray MM, Wayne RK, (2005) Selective sweep mapping of genes with large phenotypic effects. Genome Research, 15, 1809-1819
-
(2005)
Genome Research
, vol.15
, pp. 1809-1819
-
-
Pollinger, J.P.1
Bustamante, C.D.2
Fledel-Alon, A.3
Schmutz, S.4
Gray, M.M.5
Wayne, R.K.6
-
66
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
67
-
-
0036196885
-
The signature of positive selection at randomly chosen loci
-
Przeworski M, (2002) The signature of positive selection at randomly chosen loci. Genetics, 160, 1179-1189
-
(2002)
Genetics
, vol.160
, pp. 1179-1189
-
-
Przeworski, M.1
-
68
-
-
0035890998
-
Female sticklebacks count alleles in a strategy of sexual selection explaining MCH polymorphism
-
Reusch TBH, Haeberli MA, Aeschlimann PB, Milinski M, (2001) Female sticklebacks count alleles in a strategy of sexual selection explaining MCH polymorphism. Nature, 415, 300-302
-
(2001)
Nature
, vol.415
, pp. 300-302
-
-
Reusch, T.B.H.1
Haeberli, M.A.2
Aeschlimann, P.B.3
Milinski, M.4
-
69
-
-
0034759330
-
Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds
-
Rosenberg NA, Burke T, Elo K, et al. (2001) Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics, 159, 699-713
-
(2001)
Genetics
, vol.159
, pp. 699-713
-
-
Rosenberg, N.A.1
Burke, T.2
Elo, K.3
-
70
-
-
29844432016
-
Convergent evolution and divergent selection: Lizards at the White Sands ecotone
-
Rosenblum EB, (2006) Convergent evolution and divergent selection: lizards at the White Sands ecotone. The American Naturalist, 167, 1-15
-
(2006)
The American Naturalist
, vol.167
, pp. 1-15
-
-
Rosenblum, E.B.1
-
71
-
-
79953322204
-
"same same but different": Replicated ecological speciation at White Sands
-
Rosenblum EB, Harmon LJ, (2011) "Same same but different": replicated ecological speciation at White Sands. Evolution, 65, 946-960
-
(2011)
Evolution
, vol.65
, pp. 946-960
-
-
Rosenblum, E.B.1
Harmon, L.J.2
-
72
-
-
4344631967
-
Adaptive reptile color variation and the evolution of the Mc1r gene
-
Rosenblum EB, Hoekstra HE, Nachman MW, (2004) Adaptive reptile color variation and the evolution of the Mc1r gene. Evolution, 58, 1794-1808
-
(2004)
Evolution
, vol.58
, pp. 1794-1808
-
-
Rosenblum, E.B.1
Hoekstra, H.E.2
Nachman, M.W.3
-
73
-
-
36549055538
-
A multilocus perspective on colonization accompanied by selection and gene flow
-
Rosenblum EB, Hickerson M, Moritz C, (2007) A multilocus perspective on colonization accompanied by selection and gene flow. Evolution, 61, 2971-2985
-
(2007)
Evolution
, vol.61
, pp. 2971-2985
-
-
Rosenblum, E.B.1
Hickerson, M.2
Moritz, C.3
-
74
-
-
76649130556
-
Molecular and functional basis of phenotypic convergence at white lizards at White Sands
-
Rosenblum EB, Rompler H, Schoneberg T, Hoekstra HE, (2010) Molecular and functional basis of phenotypic convergence at white lizards at White Sands. Proceedings of the National Academy of Sciences, USA, 107, 2113-2117
-
(2010)
Proceedings of the National Academy of Sciences, USA
, vol.107
, pp. 2113-2117
-
-
Rosenblum, E.B.1
Rompler, H.2
Schoneberg, T.3
Hoekstra, H.E.4
-
76
-
-
84954075956
-
-
Zoological Series of the Field Museum of Natural History, Chicago, Illinois
-
Smith HM, (1943) The White Sands Earless Lizard. Zoological Series of the Field Museum of Natural History, Chicago, Illinois
-
(1943)
The White Sands Earless Lizard
-
-
Smith, H.M.1
-
77
-
-
78149359895
-
Adaptation genomics: The next generation
-
Stapley J, Reger J, Feulner PG, et al. (2010) Adaptation genomics: the next generation. Trends in Ecology and Evolution, 25, 705-712
-
(2010)
Trends in Ecology and Evolution
, vol.25
, pp. 705-712
-
-
Stapley, J.1
Reger, J.2
Feulner, P.G.3
-
78
-
-
38549103015
-
Combining population genomics and quantitative genetics: Finding the genes underlying ecologically important traits
-
Stinchcombe JR, Hoekstra HE, (2008) Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits. Heredity, 100, 158-170
-
(2008)
Heredity
, vol.100
, pp. 158-170
-
-
Stinchcombe, J.R.1
Hoekstra, H.E.2
-
79
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
80
-
-
0030583297
-
A possible involvement of melanocortin 1-receptor in regulating feather color pigmentation in the chicken
-
Takeuchi S, Suzuki H, Yabuuchi M, Takahashi S, (1996) A possible involvement of melanocortin 1-receptor in regulating feather color pigmentation in the chicken. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression, 1308, 164-168
-
(1996)
Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression
, vol.1308
, pp. 164-168
-
-
Takeuchi, S.1
Suzuki, H.2
Yabuuchi, M.3
Takahashi, S.4
-
81
-
-
33644778674
-
Directional positive selection on an allele of arbitrary dominance
-
Teshima KM, Przeworski M, (2006) Directional positive selection on an allele of arbitrary dominance. Genetics, 172, 713-718
-
(2006)
Genetics
, vol.172
, pp. 713-718
-
-
Teshima, K.M.1
Przeworski, M.2
-
83
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
The 1000 Genomes Project Consortium
-
The 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
84
-
-
0035901605
-
The molecular basis of an avian plumage polymorphism in the wild: A melanocortin-1-receptor point mutation is perfectly associated with the melanic plumage morph of the bananaquit, Coereba flaveola
-
Theron E, Hawkins K, Bermingham E, Ricklefs RE, Mundy NI, (2001) The molecular basis of an avian plumage polymorphism in the wild: a melanocortin-1-receptor point mutation is perfectly associated with the melanic plumage morph of the bananaquit, Coereba flaveola. Current Biology, 11, 550-557
-
(2001)
Current Biology
, vol.11
, pp. 550-557
-
-
Theron, E.1
Hawkins, K.2
Bermingham, E.3
Ricklefs, R.E.4
Mundy, N.I.5
-
85
-
-
33644763127
-
Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila Melanogaster
-
Thornton K, Andolfatto P, (2006) Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila Melanogaster. Genetics, 172, 1607-1619
-
(2006)
Genetics
, vol.172
, pp. 1607-1619
-
-
Thornton, K.1
Andolfatto, P.2
-
86
-
-
34247891656
-
Controlling the false-positive rate in multilocus genome scans for selection
-
Thornton KR, Jensen JD, (2007) Controlling the false-positive rate in multilocus genome scans for selection. Genetics, 175, 737-750
-
(2007)
Genetics
, vol.175
, pp. 737-750
-
-
Thornton, K.R.1
Jensen, J.D.2
-
87
-
-
84896009017
-
From FastQ data to high-confidence variant calls: The genome analysis toolkit best practices pipeline
-
Van der Auwera GA, Carneiro MO, Hartl C, et al. (2013) From FastQ data to high-confidence variant calls: the genome analysis toolkit best practices pipeline. Current Protocols, 43, 11.10.1-11.10.33
-
(2013)
Current Protocols
, vol.43
, pp. 11101-111033
-
-
Van Der Auwera, G.A.1
Carneiro, M.O.2
Hartl, C.3
-
88
-
-
0036582076
-
Extinction time and age of an allele in a large finite population
-
Van Herwaarden OA, van der Wal NJ, (2002) Extinction time and age of an allele in a large finite population. Theor Pop Biol, 61, 311-318
-
(2002)
Theor Pop Biol
, vol.61
, pp. 311-318
-
-
Van Herwaarden, O.A.1
Van Der Wal, N.J.2
-
90
-
-
70350136774
-
Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood
-
Wegmann D, Leuenberger C, Excoffier L, (2009) Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood. Genetics, 182, 1207-1218
-
(2009)
Genetics
, vol.182
, pp. 1207-1218
-
-
Wegmann, D.1
Leuenberger, C.2
Excoffier, L.3
-
91
-
-
0021566877
-
Estimating F-statistics for the analysis of population structure
-
Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.S.1
Cockerham, C.C.2
-
92
-
-
84870820953
-
A high-performance computing toolset for relatedness and principal component analysis of SNP data
-
Zheng X, Levine D, Shen J, Gogarten SM, Laurie C, Weir BS, (2012) A high-performance computing toolset for relatedness and principal component analysis of SNP data. Bioinformatics, 28, 3326-3328
-
(2012)
Bioinformatics
, vol.28
, pp. 3326-3328
-
-
Zheng, X.1
Levine, D.2
Shen, J.3
Gogarten, S.M.4
Laurie, C.5
Weir, B.S.6
|