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Volumn 15, Issue 12, 2005, Pages 1809-1819

Selective sweep mapping of genes with large phenotypic effects

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Indexed keywords

FIBROBLAST GROWTH FACTOR RECEPTOR 3;

EID: 28844443820     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.4374505     Document Type: Article
Times cited : (91)

References (83)
  • 1
    • 1542723469 scopus 로고    scopus 로고
    • High MHC diversity maintained by balancing selection in an otherwise genetically monomorphic mammal
    • Aguilar, A., Roemer, G., Debenham, S., Binns, M., Garcelon, D., and Wayne, R.K. 2004. High MHC diversity maintained by balancing selection in an otherwise genetically monomorphic mammal. Proc. Natl. Acad. Sci. 101: 3490-3494.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 3490-3494
    • Aguilar, A.1    Roemer, G.2    Debenham, S.3    Binns, M.4    Garcelon, D.5    Wayne, R.K.6
  • 5
    • 0032555240 scopus 로고    scopus 로고
    • Antarctic fish hemoglobins: Evidence for adaptive evolution at subzero temperature
    • Bargelloni, L., Marcato, S., and Patarnello, T. 1998. Antarctic fish hemoglobins: Evidence for adaptive evolution at subzero temperature. Proc. Natl. Acad. Sci. 95: 8670-8675.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 8670-8675
    • Bargelloni, L.1    Marcato, S.2    Patarnello, T.3
  • 7
    • 33644884975 scopus 로고    scopus 로고
    • A single-base change in the tyrosine kinase II domain of ovine FGFR3 causes hereditary chondrodysplasia in sheep
    • 2006 in press
    • Beever, J.E., Smit, M.A., Meyers, S.N., Hadfield, T.S., Bottema, C., Albretsen, J., and Cockett, N.E. 2006. A single-base change in the tyrosine kinase II domain of ovine FGFR3 causes hereditary chondrodysplasia in sheep. Anim. Genet. (in press).
    • Anim. Genet.
    • Beever, J.E.1    Smit, M.A.2    Meyers, S.N.3    Hadfield, T.S.4    Bottema, C.5    Albretsen, J.6    Cockett, N.E.7
  • 8
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in Drosophila melanogaster
    • Begun, D.J. and Aquadro, C.F. 1992. Levels of naturally occurring DNA polymorphism correlate with recombination rates in Drosophila melanogaster. Nature 356: 519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 9
    • 0026322339 scopus 로고
    • Lack of polymorphism on the Drosophila 4th chromosome resulting from selection
    • Berry, A.J., Ajioka, J.W., and Kreitman, M. 1991. Lack of polymorphism on the Drosophila 4th chromosome resulting from selection. Genetics 129: 1111-1117.
    • (1991) Genetics , vol.129 , pp. 1111-1117
    • Berry, A.J.1    Ajioka, J.W.2    Kreitman, M.3
  • 10
    • 0034958416 scopus 로고    scopus 로고
    • M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods
    • Boutin-Ganache, I., Raposo, M., Raymond, M., and Deschepper, C.F. 2001. M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31: 24-26, 28.
    • (2001) Biotechniques , vol.31 , pp. 24-26
    • Boutin-Ganache, I.1    Raposo, M.2    Raymond, M.3    Deschepper, C.F.4
  • 11
    • 0034764308 scopus 로고    scopus 로고
    • Chromosome-specific single-locus FISH probes allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domestic dog genome to all chromosomes
    • Breen, M., Jouquand, S., Renier, C., Mellersh, C.S., Hitte, C., Holmes, N.G., Cheron, A., Suter, N., Vignaux, F., Bristow, A.E., et al. 2001. Chromosome-specific single-locus FISH probes allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domestic dog genome to all chromosomes. Genome Res. 11: 1784-1795.
    • (2001) Genome Res. , vol.11 , pp. 1784-1795
    • Breen, M.1    Jouquand, S.2    Renier, C.3    Mellersh, C.S.4    Hitte, C.5    Holmes, N.G.6    Cheron, A.7    Suter, N.8    Vignaux, F.9    Bristow, A.E.10
  • 16
    • 0031450133 scopus 로고    scopus 로고
    • The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
    • Charlesworth, B., Nordborg, M., and Charlesworth, D. 1997. The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genet. Res. 70: 155-174.
    • (1997) Genet. Res. , vol.70 , pp. 155-174
    • Charlesworth, B.1    Nordborg, M.2    Charlesworth, D.3
  • 19
    • 1642514950 scopus 로고    scopus 로고
    • Pattern of diversity in the genomic region near the maize domestication gene
    • Clark, R.M., Linton, E., Messing, J., and Doebley, J.F. 2004. Pattern of diversity in the genomic region near the maize domestication gene. Proc. Natl. Acad. Sci. 101: 700-707.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 700-707
    • Clark, R.M.1    Linton, E.2    Messing, J.3    Doebley, J.F.4
  • 20
    • 4644246155 scopus 로고    scopus 로고
    • Ancestral inference on gene trees under selection
    • Coop, G. and Griffiths, R.C. 2004. Ancestral inference on gene trees under selection. Theor. Popul. Biol. 66: 219-232.
    • (2004) Theor. Popul. Biol. , vol.66 , pp. 219-232
    • Coop, G.1    Griffiths, R.C.2
  • 23
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay, J.C. and Wu, C.I. 2000. Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 24
    • 0242609180 scopus 로고    scopus 로고
    • Sequence divergence, functional constraint, and selection in protein evolution
    • _. 2003. Sequence divergence, functional constraint, and selection in protein evolution. Annu. Rev. Genome Hum. Genet. 4: 213-235.
    • (2003) Annu. Rev. Genome Hum. Genet. , vol.4 , pp. 213-235
  • 25
    • 0037186608 scopus 로고    scopus 로고
    • Testing the neutral theory of molecular evolution with genomic data from Drosophila
    • Fay, J.C., Wyckoff, G.J., and Wu, C.I. 2002. Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature 415: 1024-1026.
    • (2002) Nature , vol.415 , pp. 1024-1026
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.I.3
  • 26
    • 11144230088 scopus 로고    scopus 로고
    • Molecular origins of rapid and continuous morphological evolution
    • Fondon, J.W. and Garner, H.R. 2004. Molecular origins of rapid and continuous morphological evolution. Proc. Natl. Acad. Sci. 101: 18058-18063.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 18058-18063
    • Fondon, J.W.1    Garner, H.R.2
  • 28
    • 0033779877 scopus 로고    scopus 로고
    • Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes
    • Gilad, Y., Segre, D., Skorecki, K., Nachman, M.W., Lancet, D., and Sharon, D. 2000. Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes. Nature Genet. 26: 221-224.
    • (2000) Nature Genet. , vol.26 , pp. 221-224
    • Gilad, Y.1    Segre, D.2    Skorecki, K.3    Nachman, M.W.4    Lancet, D.5    Sharon, D.6
  • 30
    • 0036790812 scopus 로고    scopus 로고
    • Hitchhiking mapping: A population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster
    • Harr, B., Kauer, M., and Schlotterer, C. 2002. Hitchhiking mapping: A population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster. Proc. Natl. Acad. Sci. 99: 12949-12954.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 12949-12954
    • Harr, B.1    Kauer, M.2    Schlotterer, C.3
  • 32
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson, R.R. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 35
    • 0036189827 scopus 로고    scopus 로고
    • Detecting a local signature of genetic hitchhiking along a recombining chromosome
    • Kim, Y. and Stephan, W. 2002. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 160: 765-777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 36
    • 3843073210 scopus 로고    scopus 로고
    • Linkage disequilibrium as a signature of selective sweeps
    • Kim, Y. and Nielsen, R. 2004. Linkage disequilibrium as a signature of selective sweeps. Genetics 167: 1513-1524.
    • (2004) Genetics , vol.167 , pp. 1513-1524
    • Kim, Y.1    Nielsen, R.2
  • 37
    • 0034608871 scopus 로고    scopus 로고
    • Natural selection mapping of the warfarin-resistance gene
    • Kohn, M.H., Pelz, H.J., and Wayne, R.K. 2000. Natural selection mapping of the warfarin-resistance gene. Proc. Natl. Acad. Sci. 97: 7911-7915.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 7911-7915
    • Kohn, M.H.1    Pelz, H.J.2    Wayne, R.K.3
  • 38
    • 0041707986 scopus 로고    scopus 로고
    • Locus-specific genetic differentiation at Rw among warfarin-resistant rat (Rattus norvegicus) populations
    • _. 2003. Locus-specific genetic differentiation at Rw among warfarin-resistant rat (Rattus norvegicus) populations. Genetics 164: 1055-1070.
    • (2003) Genetics , vol.164 , pp. 1055-1070
  • 39
    • 0016515491 scopus 로고
    • Testing heterogeneity of F-values
    • Lewontin, R.C. and Krakauer, J. 1975. Testing heterogeneity of F-values. Genetics 80: 397-398.
    • (1975) Genetics , vol.80 , pp. 397-398
    • Lewontin, R.C.1    Krakauer, J.2
  • 40
    • 1842536788 scopus 로고    scopus 로고
    • Genome sequencing - Three's company
    • Lindblad-Toh, K. 2004. Genome sequencing-Three's company. Nature 428: 475-476.
    • (2004) Nature , vol.428 , pp. 475-476
    • Lindblad-Toh, K.1
  • 41
    • 0345304399 scopus 로고    scopus 로고
    • The power and promise of population genomics: From genotyping to genome typing
    • Luikart, G., England, P.R., Tallmon, D., Jordan, S., and Taberlet, P. 2003. The power and promise of population genomics: From genotyping to genome typing. Nat. Rev. Genet. 4: 981-994.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 981-994
    • Luikart, G.1    England, P.R.2    Tallmon, D.3    Jordan, S.4    Taberlet, P.5
  • 43
    • 0034302346 scopus 로고    scopus 로고
    • Achondroplastic dog breeds have no mutations in the transmembrane domain of the FGFR-3 gene
    • Martinez, S., Valdes, J., and Alonso, R.A. 2000. Achondroplastic dog breeds have no mutations in the transmembrane domain of the FGFR-3 gene. Can. J. Vet. Res. 64: 243-245.
    • (2000) Can. J. Vet. Res. , vol.64 , pp. 243-245
    • Martinez, S.1    Valdes, J.2    Alonso, R.A.3
  • 45
    • 0001905977 scopus 로고
    • Detecting natural selection by comparing geographic variation in protein and DNA polymorphisms
    • (ed. B. Golding). Chapman Hall, New York
    • McDonald, J.H. 1994. Detecting natural selection by comparing geographic variation in protein and DNA polymorphisms. In Non-neutral evolution (ed. B. Golding). Chapman Hall, New York.
    • (1994) Non-neutral Evolution
    • McDonald, J.H.1
  • 46
    • 0035818598 scopus 로고    scopus 로고
    • Genetic evidence for adaptation-driven incipient speciation of Drosophila melanogaster along a microclimatic contrast in "Evolution Canyon," Israel
    • Michalak, P., Minkov, I., Helin, A., Lerman, D.N., Bettencourt, B.R., Feder, M.E., Korol, A.B., and Nevo, E. 2001. Genetic evidence for adaptation-driven incipient speciation of Drosophila melanogaster along a microclimatic contrast in "Evolution Canyon," Israel. Proc. Natl. Acad. Sci. 98: 13195-13200.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 13195-13200
    • Michalak, P.1    Minkov, I.2    Helin, A.3    Lerman, D.N.4    Bettencourt, B.R.5    Feder, M.E.6    Korol, A.B.7    Nevo, E.8
  • 47
    • 0026465407 scopus 로고
    • Size, shape and development in the evolution of the domestic dog
    • Morey, D.F. 1992. Size, shape and development in the evolution of the domestic dog. J. Archaeol. Sci. 19: 181-204.
    • (1992) J. Archaeol. Sci. , vol.19 , pp. 181-204
    • Morey, D.F.1
  • 50
    • 0029935895 scopus 로고    scopus 로고
    • Graded activation of fibroblast growth factor receptor 3 by mutations causing achondroplasia and thanatophoric dysplasia
    • Naski, M.C., Wang, Q., Xu, J.S., and Ornitz, D.M. 1996. Graded activation of fibroblast growth factor receptor 3 by mutations causing achondroplasia and thanatophoric dysplasia. Nature Genet.13: 233-237.
    • (1996) Nature Genet. , vol.13 , pp. 233-237
    • Naski, M.C.1    Wang, Q.2    Xu, J.S.3    Ornitz, D.M.4
  • 56
    • 0036196885 scopus 로고    scopus 로고
    • The signature of positive selection at randomly chosen loci
    • Przeworski, M. 2002. The signature of positive selection at randomly chosen loci. Genetics 160: 1179-1189.
    • (2002) Genetics , vol.160 , pp. 1179-1189
    • Przeworski, M.1
  • 57
    • 0041817545 scopus 로고    scopus 로고
    • Estimating the time since the fixation of a beneficial allele
    • _. 2003. Estimating the time since the fixation of a beneficial allele. Genetics 164: 1667-1676.
    • (2003) Genetics , vol.164 , pp. 1667-1676
  • 58
    • 0016731849 scopus 로고
    • Gene frequency distributions as a test of selective neutrality
    • Robertson, A. 1975. Gene frequency distributions as a test of selective neutrality. Genetics 81: 775-785.
    • (1975) Genetics , vol.81 , pp. 775-785
    • Robertson, A.1
  • 61
    • 0036189674 scopus 로고    scopus 로고
    • A microsatellite-based multilocus screen for the identification of local selective sweeps
    • Schlotterer, C. 2002. A microsatellite-based multilocus screen for the identification of local selective sweeps. Genetics 160: 753-763.
    • (2002) Genetics , vol.160 , pp. 753-763
    • Schlotterer, C.1
  • 62
    • 0009593068 scopus 로고
    • German versatile hunting dogs
    • July 24-28
    • Schmutz, J.K. 1992. German versatile hunting dogs. Dog World July 24-28.
    • (1992) Dog World
    • Schmutz, J.K.1
  • 63
    • 0036017944 scopus 로고    scopus 로고
    • TYRP1 and MC1R genotypes and their effects on coat color in dogs
    • Schmutz, S.M., Berryere, T.G., and Goldfinch, A.D. 2002. TYRP1 and MC1R genotypes and their effects on coat color in dogs. Mamm. Genome 13: 380-387.
    • (2002) Mamm. Genome , vol.13 , pp. 380-387
    • Schmutz, S.M.1    Berryere, T.G.2    Goldfinch, A.D.3
  • 64
    • 0031825318 scopus 로고    scopus 로고
    • Genetic hitch-hiking in a subdivided population
    • Slatkin, M. and Wiehe, T. 1998. Genetic hitch-hiking in a subdivided population. Genet. Res. 71: 155-160.
    • (1998) Genet. Res. , vol.71 , pp. 155-160
    • Slatkin, M.1    Wiehe, T.2
  • 65
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Smith, J.M. and Haigh, J. 1974. The hitch-hiking effect of a favourable gene. Genet. Res. 23: 23-35.
    • (1974) Genet. Res. , vol.23 , pp. 23-35
    • Smith, J.M.1    Haigh, J.2
  • 66
    • 4644333804 scopus 로고    scopus 로고
    • SelSim: A program to simulate population genetic data with natural selection and recombination
    • Spencer, C.C.A. and Coop, G. 2005. SelSim: A program to simulate population genetic data with natural selection and recombination. Bioinformatics 20: 3673-3675.
    • (2005) Bioinformatics , vol.20 , pp. 3673-3675
    • Spencer, C.C.A.1    Coop, G.2
  • 67
    • 0002568196 scopus 로고
    • Effects of genetic recombination and population subdivision on nucleotide sequence variation in Drosphila anassae
    • ed. B. Golding, Chapman and Hall, New York
    • Stephan, W. 1994. Effects of genetic recombination and population subdivision on nucleotide sequence variation in Drosphila anassae. In Non-neutral evolution (ed. B. Golding), pp. 57-66. Chapman and Hall, New York.
    • (1994) Non-neutral Evolution , pp. 57-66
    • Stephan, W.1
  • 69
    • 14844313712 scopus 로고    scopus 로고
    • Using genome scans of DNA polymorphism to infer adaptive population divergence
    • Storz, J.F. 2005. Using genome scans of DNA polymorphism to infer adaptive population divergence. Mol. Ecol. 14: 671-688.
    • (2005) Mol. Ecol. , vol.14 , pp. 671-688
    • Storz, J.F.1
  • 70
    • 0036802040 scopus 로고    scopus 로고
    • The bovine fibroblast growth factor receptor 3 (FGFR3) gene is not the locus responsible for bovine chondrodysplastic dwarfism in Japanese brown cattle
    • Takami, M., Yoneda, K., Kobayashi, Y., Moritomo, Y., Kata, S., Womack, J., and Kunieda, T. 2002. The bovine fibroblast growth factor receptor 3 (FGFR3) gene is not the locus responsible for bovine chondrodysplastic dwarfism in Japanese brown cattle. Anim. Genet. 33: 351-355.
    • (2002) Anim. Genet. , vol.33 , pp. 351-355
    • Takami, M.1    Yoneda, K.2    Kobayashi, Y.3    Moritomo, Y.4    Kata, S.5    Womack, J.6    Kunieda, T.7
  • 71
    • 0028879826 scopus 로고
    • A population genetic test of selection at the molecular level
    • Taylor, M.F.J., Shen, Y., and Kreitman, M.E. 1995. A population genetic test of selection at the molecular level. Science 270: 1497-1499.
    • (1995) Science , vol.270 , pp. 1497-1499
    • Taylor, M.F.J.1    Shen, Y.2    Kreitman, M.E.3
  • 72
    • 0031080720 scopus 로고    scopus 로고
    • Dwarfism in Dexter cattle is not caused by the mutations in FGFR3 responsible for achondroplasia in humans
    • Usha, A.P., Lester, D.H., and Williams, J.L. 1997. Dwarfism in Dexter cattle is not caused by the mutations in FGFR3 responsible for achondroplasia in humans. Anim. Genet. 28: 55-57.
    • (1997) Anim. Genet. , vol.28 , pp. 55-57
    • Usha, A.P.1    Lester, D.H.2    Williams, J.L.3
  • 76
    • 0001333969 scopus 로고
    • Cranial morphology of domestic and wild canids: The influence of development on morphological change
    • Wayne, R.K. 1986a. Cranial morphology of domestic and wild canids: The influence of development on morphological change. Evolution 40: 243-261.
    • (1986) Evolution , vol.40 , pp. 243-261
    • Wayne, R.K.1
  • 77
    • 0022620631 scopus 로고
    • Limb morphology of domestic and wild canids: The influence of development on morphological change
    • _. 1986b. Limb morphology of domestic and wild canids: The influence of development on morphological change. J. Morphol. 187: 301-319.
    • (1986) J. Morphol. , vol.187 , pp. 301-319
  • 78
    • 0033104105 scopus 로고    scopus 로고
    • Origin, genetic diversity, and genome structure of the domestic dog
    • Wayne, R.K. and Ostrander, E.A. 1999. Origin, genetic diversity, and genome structure of the domestic dog. Bioessays 21: 247-257.
    • (1999) Bioessays , vol.21 , pp. 247-257
    • Wayne, R.K.1    Ostrander, E.A.2
  • 81
  • 83
    • 28844450475 scopus 로고    scopus 로고
    • The 302 microsatellite marker set used in this study
    • http://www.eeb.ucla.edu/dogmarkerset/; The 302 microsatellite marker set used in this study.


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