Ligands for label-free detection of whole bacteria on biosensors: A review

TrAC - Trends in Analytical Chemistry

Volumn 79, Issue , 2016, Pages 71-79

  Templier, Vincent ^a,b,c   Roux, Agnès ^a,b,c   Roupioz, Yoann ^a,b,c   Livache, Thierry ^a,b,c  

^a UNIV GRENOBLE ALPES   (France)

^b CNRS   (France)

^c CEA GRENOBLE   (France)

Author keywords

Bacterial pathogens; Biosensor; Label free; Ligands; Whole bacteria detection

Indexed keywords

ASSAYS; BACTERIA; BIOASSAY; BIOSENSORS; PATHOGENS;

BACTERIA DETECTION; BACTERIAL PATHOGENS; KEY ELEMENTS; LABEL FREE; LABEL-FREE DETECTION; PHYSICAL APPROACHES; PROCESSING STEPS; SPECIFIC INFORMATION;

LIGANDS;

APTAMER; BACTERIUM ANTIBODY; CARBOHYDRATE DERIVATIVE; LECTIN; LIGAND; MOLECULARLY IMPRINTED POLYMER; PEPTIDE DERIVATIVE; POLYPEPTIDE ANTIBIOTIC AGENT; PROTEIN DERIVATIVE;

BACTERIAL CELL; BACTERIOPHAGE; BACTERIUM DETECTION; BIOENGINEERING; BIOSENSOR; HUMAN; NONHUMAN; PHAGE DISPLAY; PRIORITY JOURNAL; REVIEW; SAMPLING; SENSITIVITY AND SPECIFICITY; WHOLE CELL;

EID: 84953334667     PISSN: 01659936     EISSN: 18793142     Source Type: Journal    
DOI: 10.1016/j.trac.2015.10.015     Document Type: Review

References (70)

1. Newell D.G., Koopmans M., Verhoef L., Duizer E., Aidara-Kane A., Sprong H., et al. Food-borne diseases - the challenges of 20 years ago still persist while new ones continue to emerge. Int. J. Food Microbiol 2010, 139(Suppl.):S3-S15.
2. National Advisory Committee on Microbiological Criteria For Foods Response to questions posed by the food safety and inspection service regarding determination of the most appropriate technologies for the food safety and inspection service to adopt in performing routine and baseline microbiological analyses. J. Food Prot 2010, 73(6):1160-1200.
3. van Belkum A., Durand G., Peyret M., Chatellier S., Zambardi G., Schrenzel J., et al. Rapid clinical bacteriology and its future impact. Ann. Lab. Med 2012, 33(1):14-27.
4. Velusamy V., Arshak K., Korostynska O., Oliwa K., Adley C. An overview of foodborne pathogen detection: In the perspective of biosensors. Biotechnol. Adv 2010, 28(2):232-254.
5. Byrne B., Stack E., Gilmartin N., O'Kennedy R. Antibody-based sensors: principles, problems and potential for detection of pathogens and associated toxins. Sensors (Basel) 2009, 9(6):4407-4445.
6. Schramm W., Paek S.-H., Voss G. Strategies for the immobilization of antibodies. Immunomethods 1993, 3(2):93-103.
7. Trilling A.K., Beekwilder J., Zuilhof H. Antibody orientation on biosensor surfaces: a minireview. Analyst 2013, 138(6):1619-1627.
8. Ahmed A., Rushworth J.V., Hirst N.A., Millner P.A. Biosensors for whole-cell bacterial detection. Clin. Microbiol. Rev 2014, 27(3):631-646.
9. Lu L., Chee G., Yamada K., Jun S. Electrochemical impedance spectroscopic technique with a functionalized microwire sensor for rapid detection of foodbornepathogens. Biosens. Bioelectron 2013, 42:492-495.
10. Bouguelia S., Roupioz Y., Slimani S., Mondani L., Casabona M.G., Durmort C., et al. On-chip microbial culture for the specific detection of very low levels of bacteria. Lab Chip 2013, 13(20):4024-4032.
11. Mondani L., Roupioz Y., Delannoy S., Fach P., Livache T. Simultaneous enrichment and optical detection of low levels of stressed Escherichia coli O157:H7 in food matrices. J. Appl. Microbiol 2014, 117(2):537-546.
12. Wang W., Singh S., Zeng D.L., King K., Nema S. Antibody structure, instability, and formulation. J. Pharm. Sci 2007, 96(1):1-26.
13. Fernandes C.P., Seixas F.K., Coutinho M.L., Vasconcellos F.A., Seyffert N., Croda J., et al. Monoclonal antibodies against LipL32, the major outer membrane protein of pathogenic Leptospira: production, characterization, and testing in diagnostic applications. Hybridoma (Larchmt) 2007, 26(1):35-41.
14. Diamond G., Beckloff N., Weinberg A., Kisich K.O. The roles of antimicrobial peptides in innate host defense. Curr. Pharm. Des 2009, 15(21):2377-2392.
15. Nguyen L.T., Haney E.F., Vogel H.J. The expanding scope of antimicrobial peptide structures and their modes of action. Trends Biotechnol 2011, 29(9):464-472.
16. Silva R.R., Avelino K.Y.P.S., Ribeiro K.L., Franco O.L., Oliveira M.D.L., Andrade C.A.S. Optical and dielectric sensors based on antimicrobial peptides for microorganism diagnosis. Front. Microbiol 2014, 5:443.
17. Soares J., Morin K., Mello C. Antimicrobial peptides for use in biosensing applications 2004, DTIC Document.
18. Mannoor M.S., Zhang S., Link A.J., McAlpine M.C. Electrical detection of pathogenic bacteria via immobilized antimicrobial peptides. Proc. Natl. Acad. Sci. U.S.A. 2010, 107(45):19207-19212.
19. Etayash H., Jiang K., Thundat T., Kaur K. Impedimetric detection of pathogenic gram-positive bacteria using an antimicrobial peptide from class iia bacteriocins. Anal. Chem 2014, 86(3):1693-1700.
20. Andrade C.A., Nascimento J.M., Oliveira I.S., de Oliveira C.V., de Melo C.P., Franco O.L., et al. Nanostructured sensor based on carbon nanotubes and clavanin A for bacterial detection. Colloids Surf. B. Biointerfaces 2015, http://dx.doi.org/10.1016/j.colsurfb.2015.03.037.
21. Rotem S., Raz N., Kashi Y., Mor A. Bacterial capture by peptide-mimetic oligoacyllysine surfaces. Appl. Environ. Microbiol 2010, 76(10):3301-3307.
22. Brogioni B., Berti F. Surface plasmon resonance for the characterization of bacterial polysaccharide antigens: a review. MedChemComm 2014, 5(8):1058-1066.
23. Liu H. Pathogenic bacterial sensors based on carbohydrates as sensing elements. Principles of Bacterial Detection: Biosensors, Recognition Receptors and Microsystems 2008, 659-687. Springer, New York. M. Zourob, S. Elwary, A. Turner (Eds.).
24. Shen Z., Huang M., Xiao C., Zhang Y., Zeng X., Wang P.G. Nonlabeled quartz crystal microbalance biosensor for bacterial detection using carbohydrate and lectin recognitions. Anal. Chem 2007, 79(6):2312-2319.
25. Wang Y., Ye Z., Si C., Ying Y. Monitoring of Escherichia coli O157:H7 in food samples using lectin based surface plasmon resonance biosensor. Food Chem 2013, 136(3-4):1303-1308.
26. Guo X., Kulkarni A., Doepke A., Halsall H.B., Iyer S., Heineman W.R. Carbohydrate-based label-free detection of Escherichia coli ORN 178 using electrochemical impedance spectroscopy. Anal. Chem 2012, 84(1):241-246.
27. Yazgan I., Noah N.M., Toure O., Zhang S., Sadik O.A. Biosensor for selective detection of E. coli in spinach using the strong affinity of derivatized mannose with fimbrial lectin. Biosens. Bioelectron 2014, 61:266-273.
28. Park S., Gildersleeve J.C., Blixt O., Shin I. Carbohydrate microarrays. Chem. Soc. Rev 2013, 42(10):4310-4326.
29. Bulard E., Bouchet-Spinelli A., Chaud P., Roget A., Calemczuk R., Fort S., et al. Carbohydrates as new probes for the identification of closely related Escherichia coli strains using surface plasmon resonance imaging. Anal. Chem 2015, 87(3):1804-1811.
30. Schmelcher M., Loessner M.J. Application of bacteriophages for detection of foodborne pathogens. Bacteriophage 2014, 4(1):e28137.
31. Fernandes E., Martins V.C., Nóbrega C., Carvalho C.M., Cardoso F.A., Cardoso S., et al. A bacteriophage detection tool for viability assessment of Salmonella cells. Biosens. Bioelectron 2014, 52:239-246.
32. Tawil N., Sacher E., Mandeville R., Meunier M. Bacteriophages: biosensing tools for multi-drug resistant pathogens. Analyst 2014, 139(6):1224-1236.
33. Balasubramanian S., Sorokulova I.B., Vodyanoy V.J., Simonian A.L. Lytic phage as a specific and selective probe for detection of Staphylococcus aureus - a surface plasmon resonance spectroscopic study. Biosens. Bioelectron 2007, 22(6):948-955.
34. Arya S.K., Singh A., Naidoo R., Wu P., McDermott M.T., Evoy S. Chemically immobilized T4-bacteriophage for specific Escherichia coli detection using surface plasmon resonance. Analyst 2011, 136(3):486-492.
35. Tawil N., Sacher E., Mandeville R., Meunier M. Surface plasmon resonance detection of E. coli and methicillin-resistant S. aureus using bacteriophages. Biosens. Bioelectron 2012, 37(1):24-29.
36. Gervais L., Gel M., Allain B., Tolba M., Brovko L., Zourob M., et al. Immobilization of biotinylated bacteriophages on biosensor surfaces. Sens. Actuators B Chem 2007, 125(2):615-621.
37. Singh A., Poshtiban S., Evoy S. Recent advances in bacteriophage based biosensors for food-borne pathogen detection. Sensors 2013, 13(2):1763.
38. Koo O.K., Liu Y., Shuaib S., Bhattacharya S., Ladisch M.R., Bashir R., et al. Targeted capture of pathogenic bacteria using a mammalian cell receptor coupled with dielectrophoresis on a biochip. Anal. Chem 2009, 81(8):3094-3101.
39. Holmes S.D., May K., Johansson V., Markey F., Critchley I.A. Studies on the interaction of staphylococcus aureus and staphylococcus epidermidis with fibronectin using surface plasmon resonance (BIAcore). J. Microbiol. Methods 1997, 28(1):77-84.
40. Oli M.W., McArthur W.P., Brady L.J. A whole cell BIAcore assay to evaluate P1-mediated adherence of Streptococcus mutans to human salivary agglutinin and inhibition by specific antibodies. J. Microbiol. Methods 2006, 65(3):503-511.
41. Banerjee P., Bhunia A.K. Mammalian cell-based biosensors for pathogens and toxins. Trends Biotechnol 2009, 27(3):179-188.
42. Seo S.-M., Jeon J.-W., Kim T.-Y., Paek S.-H. An innate immune system-mimicking, real-time biosensing of infectious bacteria. Analyst 2015, 140:6061-6070.
43. Vlatakis G., Andersson L.I., Muller R., Mosbach K. Drug assay using antibody mimics made by molecular imprinting. Nature 1993, 361(6413):645-647.
44. Dickert F.L., Lieberzeit P., Hayden O. Sensor strategies for microorganism detection - from physical principles to imprinting procedures. Anal. Bioanal. Chem 2003, 377(3):540-549.
45. Suriyanarayanan S., Cywinski P.J., Moro A.J., Mohr G.J., Kutner W. Chemosensors based on molecularly imprinted polymers. Molecular Imprinting 2012, 165-265. Springer.
46. Cohen T., Starosvetsky J., Cheruti U., Armon R. Whole cell imprinting in sol-gel thin films for bacterial recognition in liquids: macromolecular fingerprinting. Int. J. Mol. Sci 2010, 11(4):1236-1252.
47. Singh A., Arya S.K., Glass N., Hanifi-Moghaddam P., Naidoo R., Szymanski C.M., et al. Bacteriophage tailspike proteins as molecular probes for sensitive and selective bacterial detection. Biosens. Bioelectron 2010, 26(1):131-138.
48. Singh A., Arutyunov D., McDermott M.T., Szymanski C.M., Evoy S. Specific detection of Campylobacter jejuni using the bacteriophage NCTC 12673 receptor binding protein as a probe. Analyst 2011, 136(22):4780-4786.
49. Poshtiban S., Singh A., Fitzpatrick G., Evoy S. Bacteriophage tail-spike protein derivitized microresonator arrays for specific detection of pathogenic bacteria. Sens. Actuators B Chem 2013, 181:410-416.
50. Kong M., Sim J., Kang T., Nguyen H.H., Park H.K., Chung B.H., et al. A novel and highly specific phage endolysin cell wall binding domain for detection of Bacillus cereus. Eur. Biophys. J. 2015, 44(6):437-446.
51. Bunka D.H.J., Stockley P.G. Aptamers come of age - at last. Nat. Rev. Microbiol 2006, 4(8):588-596.
52. Tombelli S., Minunni M., Mascini M. Aptamers-based assays for diagnostics, environmental and food analysis. Biomol. Eng 2007, 24(2):191-200.
53. Cao X., Li S., Chen L., Ding H., Xu H., Huang Y., et al. Combining use of a panel of ssDNA aptamers in the detection of Staphylococcus aureus. Nucleic Acids Res 2009, 37(14):4621-4628.
54. Chang Y.C., Yang C.Y., Sun R.L., Cheng Y.F., Kao W.C., Yang P.C. Rapid single cell detection of Staphylococcus aureus by aptamer-conjugated gold nanoparticles. Sci. Rep 2013, 3:1863.
55. Zelada-Guillén G.A., Riu J., Düzgün A., Rius F.X. Immediate detection of living bacteria at ultralow concentrations using a carbon nanotube based potentiometric aptasensor. Angew. Chem. Int. Ed 2009, 48(40):7334-7337.
56. Zelada-Guillen G.A., Sebastian-Avila J.L., Blondeau P., Riu J., Rius F.X. Label-free detection of Staphylococcus aureus in skin using real-time potentiometric biosensors based on carbon nanotubes and aptamers. Biosens. Bioelectron 2012, 31(1):226-232.
57. Labib M., Zamay A.S., Kolovskaya O.S., Reshetneva I.T., Zamay G.S., Kibbee R.J., et al. Aptamer-based viability impedimetric sensor for bacteria. Anal. Chem 2012, 84(21):8966-8969.
58. Yoo S.M., Kim D.K., Lee S.Y. Aptamer-functionalized localized surface plasmon resonance sensor for the multiplexed detection of different bacterial species. Talanta 2015, 132:112-117.
59. Smith G. Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 1985, 228(4705):1315-1317.
60. Petrenko V.A., Sorokulova I.B. Detection of biological threats. A challenge for directed molecular evolution. J. Microbiol. Methods 2004, 58(2):147-168.
61. Gulig P.A., Martin J.L., Messer H.G., Deffense B.L., Harpley C.J. Phage display methods for detection of bacterial pathogens. Principles of Bacterial Detection: Biosensors, Recognition Receptors and Microsystems 2008, 755-783. Springer, New York. M. Zourob, S. Elwary, A. Turner (Eds.).
62. Pande J., Szewczyk M.M., Grover A.K. Phage display: concept, innovations, applications and future. Biotechnol. Adv 2010, 28(6):849-858.
63. Olsen E.V., Sorokulova I.B., Petrenko V.A., Chen I.H., Barbaree J.M., Vodyanoy V.J. Affinity-selected filamentous bacteriophage as a probe for acoustic wave biodetectors of Salmonella typhimurium. Biosens. Bioelectron 2006, 21(8):1434-1442.
64. Sorokulova I.B., Olsen E.V., Chen I.H., Fiebor B., Barbaree J.M., Vodyanoy V.J., et al. Landscape phage probes for Salmonella typhimurium. J. Microbiol. Methods 2005, 63(1):55-72.
65. Nanduri V., Bhunia A.K., Tu S.-I., Paoli G.C., Brewster J.D. SPR biosensor for the detection of L. monocytogenes using phage-displayed antibody. Biosens. Bioelectron 2007, 23(2):248-252.
66. Wang J., Morton M.J., Elliott C.T., Karoonuthaisiri N., Segatori L., Biswal S.L. Rapid detection of pathogenic bacteria and screening of phage-derived peptides using microcantilevers. Anal. Chem 2014, 86(3):1671-1678.
67. Yamada K., Wanchun J., Ohkura T., Murai A., Hayakawa R., Kinoshita K., et al. Detection of methicillin-resistant Staphylococcus aureus using a specific anti-PBP2a chicken IgY antibody. Jpn J. Infect. Dis 2013, 66(2):103-108.
68. Hamers-Casterman C., Atarhouch T., Muyldermans S., Robinson G., Hamers C., Songa E.B., et al. Naturally occurring antibodies devoid of light chains. Nature 1993, 363(6428):446-448.
69. Dumoulin M., Conrath K., Van Meirhaeghe A., Meersman F., Heremans K., Frenken L.G., et al. Single-domain antibody fragments with high conformational stability. Protein Sci 2002, 11(3):500-515.
70. Trilling A.K., de Ronde H., Noteboom L., van Houwelingen A., Roelse M., Srivastava S.K., et al. A broad set of different llama antibodies specific for a 16 kDa heat shock protein of Mycobacterium tuberculosis. PLoS ONE 2011, 6(10):e26754.