메뉴 건너뛰기




Volumn 6, Issue NOV, 2015, Pages

Extremely thermophilic microorganisms as metabolic engineering platforms for production of fuels and industrial chemicals

Author keywords

Bio based chemicals; Biotechnology; Extreme thermophiles; Genetics; Metabolic engineering

Indexed keywords

BIOMASS PRODUCTION; BIOTECHNOLOGY; BIOTRANSFORMATION; CALDICELLULOSIRUPTOR BESCII; CARBON FIXATION; DNA EXTRACTION; ENZYME ACTIVITY; GENOME ANALYSIS; METABOLIC ENGINEERING; METABOLIC REGULATION; METAGENOME; METALLOSPHAERA SEDULA; MICROBIOLOGY; MOLECULAR GENETICS; NONHUMAN; PYROCOCCUS FURIOSUS; REVIEW; SEQUENCE ANALYSIS; SULFOLOBUS; THERMOANAEROBACTER MATHRANII; THERMOCOCCUS KODAKARENSIS; THERMOPHILIC BACTERIUM; THERMOTOGA; THERMUS THERMOPHILUS;

EID: 84949803390     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.01209     Document Type: Review
Times cited : (158)

References (164)
  • 1
    • 76649111376 scopus 로고    scopus 로고
    • High-temperature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast?
    • Abdel-Banat, B. A., Hoshida, H., Ano, A., Nonklang, S., and Akada, R. (2010). High-temperature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast? Appl. Microbiol. Biol. 85, 861-867. doi: 10.1007/s00253-009-2248-5
    • (2010) Appl. Microbiol. Biol , vol.85 , pp. 861-867
    • Abdel-Banat, B.A.1    Hoshida, H.2    Ano, A.3    Nonklang, S.4    Akada, R.5
  • 2
    • 0035158352 scopus 로고    scopus 로고
    • Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus
    • Adams, M. W., Holden, J. F., Menon, A. L., Schut, G. J., Grunden, A. M., Hou, C., et al. (2001). Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 183, 716-724. doi: 10.1128/JB.183.2.716-724.2001
    • (2001) J. Bacteriol , vol.183 , pp. 716-724
    • Adams, M.W.1    Holden, J.F.2    Menon, A.L.3    Schut, G.J.4    Grunden, A.M.5    Hou, C.6
  • 3
    • 0028833257 scopus 로고
    • Methanogenesis in thermophilic biogas reactors
    • Ahring, B. K. (1995). Methanogenesis in thermophilic biogas reactors. Anton Leeuw 67, 91-102. doi: 10.1007/BF00872197
    • (1995) Anton Leeuw , vol.67 , pp. 91-102
    • Ahring, B.K.1
  • 4
    • 0033119786 scopus 로고    scopus 로고
    • Production of ethanol from wet oxidised wheat straw by Thermoanaerobacter mathranii
    • Ahring, B. K., Licht, D., Schmidt, A. S., Sommer, P., and Thomsen, A. B. (1999). Production of ethanol from wet oxidised wheat straw by Thermoanaerobacter mathranii. Bioresource Technol 68, 3-9. doi: 10.1016/S0960-8524(98)00077-7
    • (1999) Bioresource Technol , vol.68 , pp. 3-9
    • Ahring, B.K.1    Licht, D.2    Schmidt, A.S.3    Sommer, P.4    Thomsen, A.B.5
  • 5
    • 39449138872 scopus 로고    scopus 로고
    • Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome
    • Albers, S. V., and Driessen, A. J. (2008). Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome. Archaea 2, 145-149. doi: 10.1155/2008/948014
    • (2008) Archaea , vol.2 , pp. 145-149
    • Albers, S.V.1    Driessen, A.J.2
  • 6
    • 32444439634 scopus 로고    scopus 로고
    • Production of recombinant and tagged proteins in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Albers, S. V., Jonuscheit, M., Dinkelaker, S., Urich, T., Kletzin, A., Tampé, R., et al. (2006). Production of recombinant and tagged proteins in the hyperthermophilic archaeon Sulfolobus solfataricus. Appl. Environ. Microbiol. 72, 102-111. doi: 10.1128/AEM.72.1.102-111.2006
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 102-111
    • Albers, S.V.1    Jonuscheit, M.2    Dinkelaker, S.3    Urich, T.4    Kletzin, A.5    Tampé, R.6
  • 7
    • 84930239507 scopus 로고    scopus 로고
    • 'The Family Sulfolobaceae'
    • ed. E. E. A. Rosenberg (Berlin: Springer-Verlag)
    • Albers, S.-V., and Siebers, B. (2014). "The Family Sulfolobaceae". in The Prokaryotes, ed E. E. A. Rosenberg (Berlin: Springer-Verlag), 323-346.
    • (2014) The Prokaryotes , pp. 323-346
    • Albers, S.-V.1    Siebers, B.2
  • 8
    • 0035093350 scopus 로고    scopus 로고
    • Energetics of overall metabolic reactions of thermophilic and hyperthermophilic archaea and bacteria
    • Amend, J. P., and Shock, E. L. (2001). Energetics of overall metabolic reactions of thermophilic and hyperthermophilic archaea and bacteria. FEMS Microbiol. Rev. 25, 175-243. doi: 10.1111/j.1574-6976.2001.tb00576.x
    • (2001) FEMS Microbiol. Rev , vol.25 , pp. 175-243
    • Amend, J.P.1    Shock, E.L.2
  • 9
    • 8444239349 scopus 로고    scopus 로고
    • Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1
    • Atomi, H., Fukui, T., Kanai, T., Morikawa, M., and Imanaka, T. (2004). Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1. Archaea 1, 263-267. doi: 10.1155/2004/204953
    • (2004) Archaea , vol.1 , pp. 263-267
    • Atomi, H.1    Fukui, T.2    Kanai, T.3    Morikawa, M.4    Imanaka, T.5
  • 10
    • 80053385099 scopus 로고    scopus 로고
    • Application of hyperthermophiles and their enzymes
    • Atomi, H., Sato, T., and Kanai, T. (2011). Application of hyperthermophiles and their enzymes. Curr. Opin. Microbiol. 22, 618-626. doi: 10.1016/j.copbio.2011.06.010
    • (2011) Curr. Opin. Microbiol , vol.22 , pp. 618-626
    • Atomi, H.1    Sato, T.2    Kanai, T.3
  • 11
    • 33750208876 scopus 로고    scopus 로고
    • A spreadable, non-integrative and high copy number shuttle vector for Sulfolobus solfataricus based on the genetic element pSSVx from Sulfolobus islandicus
    • Aucelli, T., Contursi, P., Girfoglio, M., Rossi, M., and Cannio, R. (2006). A spreadable, non-integrative and high copy number shuttle vector for Sulfolobus solfataricus based on the genetic element pSSVx from Sulfolobus islandicus. Nucleic Acids Res. 34, e114. doi: 10.1093/nar/gkl615
    • (2006) Nucleic Acids Res , vol.34
    • Aucelli, T.1    Contursi, P.2    Girfoglio, M.3    Rossi, M.4    Cannio, R.5
  • 12
    • 75749095204 scopus 로고    scopus 로고
    • Physiological versatility of the extremely thermoacidophilic archaeon Metallosphaera sedula supported by transcriptomic analysis of heterotrophic, autotrophic, and mixotrophic growth
    • Auernik, K. S., and Kelly, R. M. (2010). Physiological versatility of the extremely thermoacidophilic archaeon Metallosphaera sedula supported by transcriptomic analysis of heterotrophic, autotrophic, and mixotrophic growth. Appl. Environ. Microbiol. 76, 931-935. doi: 10.1128/AEM.01336-09
    • (2010) Appl. Environ. Microbiol , vol.76 , pp. 931-935
    • Auernik, K.S.1    Kelly, R.M.2
  • 13
    • 38949170756 scopus 로고    scopus 로고
    • The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism
    • Auernik, K. S., Maezato, Y., Blum, P. H., and Kelly, R. M. (2008). The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism. Appl. Environ. Microbiol. 74, 682-692. doi: 10.1128/AEM.02019-07
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 682-692
    • Auernik, K.S.1    Maezato, Y.2    Blum, P.H.3    Kelly, R.M.4
  • 14
    • 77955325659 scopus 로고    scopus 로고
    • Exploring research frontiers in microbiology: recent advances in halophilic and thermophilic extremophiles
    • Averhoff, B., and Müller, V. (2010). Exploring research frontiers in microbiology: recent advances in halophilic and thermophilic extremophiles. Res. Microbiol. 161, 506-514. doi: 10.1016/j.resmic.2010.05.006
    • (2010) Res. Microbiol , vol.161 , pp. 506-514
    • Averhoff, B.1    Müller, V.2
  • 15
    • 0642281749 scopus 로고    scopus 로고
    • A short history of the polymerase chain reaction
    • Bartlett, J. M., and Stirling, D. (2003). A short history of the polymerase chain reaction. Methods Mol. Biol. 226, 3-6. doi: 10.1385/1-59259-384-4:3
    • (2003) Methods Mol. Biol , vol.226 , pp. 3-6
    • Bartlett, J.M.1    Stirling, D.2
  • 16
    • 84917691409 scopus 로고    scopus 로고
    • Single gene insertion drives bioalcohol production by a thermophilic archaeon
    • Basen, M., Schut, G. J., Nguyen, D. M., Lipscomb, G. L., Benn, R. A., Prybol, C. J., et al. (2014). Single gene insertion drives bioalcohol production by a thermophilic archaeon. Proc. Natl. Acad. Sci. U.S.A. 111, 17618-17623. doi: 10.1073/pnas.1413789111
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. 17618-17623
    • Basen, M.1    Schut, G.J.2    Nguyen, D.M.3    Lipscomb, G.L.4    Benn, R.A.5    Prybol, C.J.6
  • 17
    • 84860522983 scopus 로고    scopus 로고
    • Engineering a hyperthermophilic archaeon for temperature-dependent product formation
    • Basen, M., Sun, J., and Adams, M. W. (2012). Engineering a hyperthermophilic archaeon for temperature-dependent product formation. mBio 3, e00053-e00012. doi: 10.1128/mBio.00053-12
    • (2012) mBio , vol.3
    • Basen, M.1    Sun, J.2    Adams, M.W.3
  • 18
    • 80052615877 scopus 로고    scopus 로고
    • Microbial contamination of fuel ethanol fermentations
    • Beckner, M., Ivey, M. L., and Phister, T. G. (2011). Microbial contamination of fuel ethanol fermentations. Lett. Appl. Microbiol. 53, 387-394. doi: 10.1111/j.1472-765X.2011.03124.x
    • (2011) Lett. Appl. Microbiol , vol.53 , pp. 387-394
    • Beckner, M.1    Ivey, M.L.2    Phister, T.G.3
  • 19
    • 37249052742 scopus 로고    scopus 로고
    • A 3-Hydroxypropionate/4-Hydroxybutyrate Autotrophic carbon dioxide assimilation pathway in Archaea
    • Berg, I. A., Kockelkorn, D., Buckel, W., and Fuchs, G. (2007). A 3-Hydroxypropionate/4-Hydroxybutyrate Autotrophic carbon dioxide assimilation pathway in Archaea. Science 318, 1782-1786. doi: 10.1126/science.1149976
    • (2007) Science , vol.318 , pp. 1782-1786
    • Berg, I.A.1    Kockelkorn, D.2    Buckel, W.3    Fuchs, G.4
  • 20
    • 49749147488 scopus 로고    scopus 로고
    • Genetic tools for Sulfolobus spp.: vectors and first applications
    • Berkner, S., and Lipps, G. (2008). Genetic tools for Sulfolobus spp.: vectors and first applications. Arch. Microbiol. 190, 217-230. doi: 10.1007/s00203-008-0392-4
    • (2008) Arch. Microbiol , vol.190 , pp. 217-230
    • Berkner, S.1    Lipps, G.2
  • 21
    • 34547647772 scopus 로고    scopus 로고
    • Small multicopy, non-integrative shuttle vectors based on the plasmid pRN1 for Sulfolobus acidocaldarius and Sulfolobus solfataricus, model organisms of the (cren-)archaea
    • Berkner, S., Grogan, D., Albers, S.-V., and Lipps, G. (2007). Small multicopy, non-integrative shuttle vectors based on the plasmid pRN1 for Sulfolobus acidocaldarius and Sulfolobus solfataricus, model organisms of the (cren-)archaea. Nucleic Acids Res. 35, e88. doi: 10.1093/nar/gkm449
    • (2007) Nucleic Acids Res , vol.35
    • Berkner, S.1    Grogan, D.2    Albers, S.-V.3    Lipps, G.4
  • 22
    • 77951766898 scopus 로고    scopus 로고
    • Inducible and constitutive promoters for genetic systems in Sulfolobus acidocaldarius
    • Berkner, S., Wlodkowski, A., Albers, S.-V., and Lipps, G. (2010). Inducible and constitutive promoters for genetic systems in Sulfolobus acidocaldarius. Extremophiles 14, 249-259. doi: 10.1007/s00792-010-0304-9
    • (2010) Extremophiles , vol.14 , pp. 249-259
    • Berkner, S.1    Wlodkowski, A.2    Albers, S.-V.3    Lipps, G.4
  • 23
    • 0029998291 scopus 로고    scopus 로고
    • Molecular and industrial aspects of glucose isomerase
    • Bhosale, S. H., Rao, M. B., and Deshpande, V. V. (1996). Molecular and industrial aspects of glucose isomerase. Microbiol. Rev. 60, 280-300.
    • (1996) Microbiol. Rev , vol.60 , pp. 280-300
    • Bhosale, S.H.1    Rao, M.B.2    Deshpande, V.V.3
  • 26
    • 84866327623 scopus 로고    scopus 로고
    • Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome
    • Bridger, S. L., Lancaster, W. A., Poole, F. L., Schut, G. J., and Adams, M. W. W. (2012). Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome. J. Bacteriol. 194, 4097-4106. doi: 10.1128/JB.00439-12
    • (2012) J. Bacteriol , vol.194 , pp. 4097-4106
    • Bridger, S.L.1    Lancaster, W.A.2    Poole, F.L.3    Schut, G.J.4    Adams, M.W.W.5
  • 27
    • 0015275944 scopus 로고
    • Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature
    • Brock, T. D., Brock, K. M., Belly, R. T., and Weiss, R. L. (1972). Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch. Mikrobiol. 84, 54-68. doi: 10.1007/BF00408082
    • (1972) Arch. Mikrobiol , vol.84 , pp. 54-68
    • Brock, T.D.1    Brock, K.M.2    Belly, R.T.3    Weiss, R.L.4
  • 29
    • 33745991943 scopus 로고    scopus 로고
    • Comparative genomics of Thermus thermophilus: plasticity of the megaplasmid and its contribution to a thermophilic lifestyle
    • Brüggemann, H., and Chen, C. (2006). Comparative genomics of Thermus thermophilus: plasticity of the megaplasmid and its contribution to a thermophilic lifestyle. J. Biotechnol. 124, 654-661. doi: 10.1016/j.jbiotec.2006.03.043
    • (2006) J. Biotechnol , vol.124 , pp. 654-661
    • Brüggemann, H.1    Chen, C.2
  • 30
    • 84923294726 scopus 로고    scopus 로고
    • Engineering the genome of Thermus thermophilus using a counter-selectable marker
    • Carr, J. F., Danziger, M. E., Huang, A. L., Dahlberg, A. E., and Gregory, S. T. (2015). Engineering the genome of Thermus thermophilus using a counter-selectable marker. J. Bacteriol. 197, 1135-1144. doi: 10.1128/JB.02384-14
    • (2015) J. Bacteriol , vol.197 , pp. 1135-1144
    • Carr, J.F.1    Danziger, M.E.2    Huang, A.L.3    Dahlberg, A.E.4    Gregory, S.T.5
  • 31
    • 61549106933 scopus 로고    scopus 로고
    • Thermus thermophilus as biological model
    • Cava, F., Hidalgo, A., and Berenguer, J. (2009). Thermus thermophilus as biological model. Extremophiles 13, 213-231. doi: 10.1007/s00792-009-0226-6
    • (2009) Extremophiles , vol.13 , pp. 213-231
    • Cava, F.1    Hidalgo, A.2    Berenguer, J.3
  • 32
    • 84878368850 scopus 로고    scopus 로고
    • Metabolic engineering of Caldicellulosiruptor bescii yields increased hydrogen production from lignocellulosic biomass
    • Cha, M., Chung, D. W., Elkins, J. G., Guss, A. M., and Westpheling, J. (2013). Metabolic engineering of Caldicellulosiruptor bescii yields increased hydrogen production from lignocellulosic biomass. Biotechnol. Biofuels 6:85. doi: 10.1186/1754-6834-6-85
    • (2013) Biotechnol. Biofuels , vol.6 , pp. 85
    • Cha, M.1    Chung, D.W.2    Elkins, J.G.3    Guss, A.M.4    Westpheling, J.5
  • 33
    • 21844477811 scopus 로고    scopus 로고
    • The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota
    • Chen, L., Brügger, K., Skovgaard, M., Redder, P., She, Q., Torarinsson, E., et al. (2005). The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J. Bacteriol. 187, 4992-4999. doi: 10.1128/JB.187.14.4992-4999.2005
    • (2005) J. Bacteriol , vol.187 , pp. 4992-4999
    • Chen, L.1    Brügger, K.2    Skovgaard, M.3    Redder, P.4    She, Q.5    Torarinsson, E.6
  • 34
    • 0037470149 scopus 로고    scopus 로고
    • Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima
    • Chhabra, S. R., Shockley, K. R., Conners, S. B., Scott, K. L., Wolfinger, R. D., and Kelly, R. M. (2003). Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima. J. Biol. Chem. 278, 7540-7552. doi: 10.1074/jbc. M211748200
    • (2003) J. Biol. Chem , vol.278 , pp. 7540-7552
    • Chhabra, S.R.1    Shockley, K.R.2    Conners, S.B.3    Scott, K.L.4    Wolfinger, R.D.5    Kelly, R.M.6
  • 35
    • 84878246106 scopus 로고    scopus 로고
    • Overcoming restriction as a barrier to DNA transformation in Caldicellulosiruptor species results in efficient marker replacement
    • Chung, D. W., Farkas, J., and Westpheling, J. (2013). Overcoming restriction as a barrier to DNA transformation in Caldicellulosiruptor species results in efficient marker replacement. Biotechnol. Biofuels 6:82. doi: 10.1186/1754-6834-6-82
    • (2013) Biotechnol. Biofuels , vol.6 , pp. 82
    • Chung, D.W.1    Farkas, J.2    Westpheling, J.3
  • 36
    • 84902590153 scopus 로고    scopus 로고
    • Direct conversion of plant biomass to ethanol by engineered Caldicellulosiruptor bescii
    • Chung, D., Cha, M., Guss, A. M., and Westpheling, J. (2014). Direct conversion of plant biomass to ethanol by engineered Caldicellulosiruptor bescii. Proc. Natl. Acad. Sci. U.S.A. 111, 8931-8936. doi: 10.1073/pnas.1402210111
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. 8931-8936
    • Chung, D.1    Cha, M.2    Guss, A.M.3    Westpheling, J.4
  • 37
    • 84865154915 scopus 로고    scopus 로고
    • Methylation by a unique a-class N4-cytosine methyltransferase is required for DNA transformation of Caldicellulosiruptor bescii DSM6725
    • Chung, D., Farkas, J., Huddleston, J. R., Olivar, E., and Westpheling, J. (2012). Methylation by a unique a-class N4-cytosine methyltransferase is required for DNA transformation of Caldicellulosiruptor bescii DSM6725. PLoS ONE 7:e43844. doi: 10.1371/journal.pone.0043844
    • (2012) PLoS ONE , vol.7
    • Chung, D.1    Farkas, J.2    Huddleston, J.R.3    Olivar, E.4    Westpheling, J.5
  • 38
    • 27144509128 scopus 로고    scopus 로고
    • An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima
    • Conners, S. B., Montero, C. I., Comfort, D. A., Shockley, K. R., Johnson, M. R., Chhabra, S. R., et al. (2005). An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima. J. Bacteriol. 187, 7267-7282. doi: 10.1128/JB.187.21.7267-7282.2005
    • (2005) J. Bacteriol , vol.187 , pp. 7267-7282
    • Conners, S.B.1    Montero, C.I.2    Comfort, D.A.3    Shockley, K.R.4    Johnson, M.R.5    Chhabra, S.R.6
  • 39
    • 0016426743 scopus 로고
    • Extremely thermophilic acidophilic bacteria convergent with Sulfolobus acidocaldarius
    • de Rosa, M., Gambacorta, A., and Bu'lock, J. (1975). Extremely thermophilic acidophilic bacteria convergent with Sulfolobus acidocaldarius. J. Gen. Microbiol. 86, 156-164.
    • (1975) J. Gen. Microbiol , vol.86 , pp. 156-164
    • de Rosa, M.1    Gambacorta, A.2    Bu'lock, J.3
  • 40
    • 70349462511 scopus 로고    scopus 로고
    • Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus
    • Deng, L., Zhu, H. J., Chen, Z. J., Liang, Y. X., and She, Q. X. (2009). Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus. Extremophiles 13, 735-746. doi: 10.1007/s00792-009-0254-2
    • (2009) Extremophiles , vol.13 , pp. 735-746
    • Deng, L.1    Zhu, H.J.2    Chen, Z.J.3    Liang, Y.X.4    She, Q.X.5
  • 41
    • 84920063703 scopus 로고    scopus 로고
    • 'Commercial applications of thermophile bioleaching'
    • eds D. E. Rawlings, D. B. Johnson, (Berlin Heidelberg: Springer-Verlag)
    • Du Plessis, C. A., Batty, J. D., and Dew, D. W. (2007). "Commercial applications of thermophile bioleaching". in Biomining, eds D. E. Rawlings, D. B. Johnson, (Berlin Heidelberg: Springer-Verlag), 57-80.
    • (2007) Biomining , pp. 57-80
    • Du Plessis, C.A.1    Batty, J.D.2    Dew, D.W.3
  • 42
    • 84949918169 scopus 로고    scopus 로고
    • (Accessed August 25, 2015)
    • Dupont/Danisco (2012). DuPont Nutrition & Health Hurdles the Process Challenges for Pizza Cheese [Online]. Available online at: http://www.danisco.com/about-dupont/news/news-archive/2012/dupont-hurdles-the-process-challenges-for-pizza-cheese/(Accessed August 25, 2015).
    • (2012) DuPont Nutrition & Health Hurdles the Process Challenges for Pizza Cheese
  • 43
    • 84879028690 scopus 로고    scopus 로고
    • Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis
    • Elmore, J. R., Yokooji, Y., Sato, T., Olson, S., Claiborne, V. C., Glover, I. III., et al. (2013). Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis. RNA Biol. 10, 828-840. doi: 10.4161/rna.24084
    • (2013) RNA Biol , vol.10 , pp. 828-840
    • Elmore, J.R.1    Yokooji, Y.2    Sato, T.3    Olson, S.4    Claiborne, V.C.5    Glover, I.6
  • 44
    • 84864076962 scopus 로고    scopus 로고
    • Recombinogenic properties of Pyrococcus furiosus Strain COM1 enable rapid selection of targeted mutants
    • Farkas, J., Stirrett, K., Lipscomb, G. L., Nixon, W., Scott, R. A., Adams, M. W. W., et al. (2012). Recombinogenic properties of Pyrococcus furiosus Strain COM1 enable rapid selection of targeted mutants. Appl. Environ. Microbiol. 78, 4669-4676. doi: 10.1128/AEM.00936-12
    • (2012) Appl. Environ. Microbiol , vol.78 , pp. 4669-4676
    • Farkas, J.1    Stirrett, K.2    Lipscomb, G.L.3    Nixon, W.4    Scott, R.A.5    Adams, M.W.W.6
  • 45
    • 0022445886 scopus 로고
    • Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100°C
    • Fiala, G., and Stetter, K. (1986). Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100°C. Arch. Microbiol. 145, 56-61. doi: 10.1007/BF00413027
    • (1986) Arch. Microbiol , vol.145 , pp. 56-61
    • Fiala, G.1    Stetter, K.2
  • 46
    • 84874111513 scopus 로고    scopus 로고
    • Extreme thermophiles: moving beyond single-enzyme biocatalysis
    • Frock, A. D., and Kelly, R. M. (2012). Extreme thermophiles: moving beyond single-enzyme biocatalysis. Curr. Opin. Chem. Eng. 1, 363-372. doi: 10.1016/j.coche.2012.07.003
    • (2012) Curr. Opin. Chem. Eng , vol.1 , pp. 363-372
    • Frock, A.D.1    Kelly, R.M.2
  • 47
    • 84857803390 scopus 로고    scopus 로고
    • Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases
    • Frock, A. D., Gray, S. R., and Kelly, R. M. (2012). Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases. Appl. Environ. Microbiol. 78, 1978-1986. doi: 10.1128/AEM.07069-11
    • (2012) Appl. Environ. Microbiol , vol.78 , pp. 1978-1986
    • Frock, A.D.1    Gray, S.R.2    Kelly, R.M.3
  • 48
    • 13544250517 scopus 로고    scopus 로고
    • Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes
    • Fukui, T., Atomi, H., Kanai, T., Matsumi, R., Fujiwara, S., and Imanaka, T. (2005). Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res. 15, 352-363. doi: 10.1101/gr.3003105
    • (2005) Genome Res , vol.15 , pp. 352-363
    • Fukui, T.1    Atomi, H.2    Kanai, T.3    Matsumi, R.4    Fujiwara, S.5    Imanaka, T.6
  • 49
    • 84866375597 scopus 로고    scopus 로고
    • Cellulose degradation by Sulfolobus solfataricus requires a cell-anchored endo-beta-1-4-glucanase
    • Girfoglio, M., Rossi, M., and Cannio, R. (2012). Cellulose degradation by Sulfolobus solfataricus requires a cell-anchored endo-beta-1-4-glucanase. J. Bacteriol. 194, 5091-5100. doi: 10.1128/JB.00672-12
    • (2012) J. Bacteriol , vol.194 , pp. 5091-5100
    • Girfoglio, M.1    Rossi, M.2    Cannio, R.3
  • 50
    • 84920733631 scopus 로고    scopus 로고
    • There's CRISPR in your yogurt
    • Grens, K. (2015). There's CRISPR in your yogurt. Scientist 29, 1. Available online at: http://www.the-scientist.com/?articles.view/articleNo/41676/title/There-s-CRISPR-in-Your-Yogurt/
    • (2015) Scientist , vol.29 , pp. 1
    • Grens, K.1
  • 51
    • 8744225606 scopus 로고    scopus 로고
    • Genomic comparison of archaeal conjugative plasmids from Sulfolobus
    • Greve, B., Jensen, S., Brügger, K., Zillig, W., and Garrett, R. A. (2004). Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea 1, 231-239. doi: 10.1155/2004/151926
    • (2004) Archaea , vol.1 , pp. 231-239
    • Greve, B.1    Jensen, S.2    Brügger, K.3    Zillig, W.4    Garrett, R.A.5
  • 52
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa, I., Vergnaud, G., and Pourcel, C. (2007). The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8:172. doi: 10.1186/1471-2105-8-172
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 53
    • 0024351039 scopus 로고
    • Phenotypic characterization of the archaebacterial genus Sulfolobus-Comparison of 5 wild-type strains
    • Grogan, D. W. (1989). Phenotypic characterization of the archaebacterial genus Sulfolobus-Comparison of 5 wild-type strains. J. Bacteriol. 171, 6710-6719.
    • (1989) J. Bacteriol , vol.171 , pp. 6710-6719
    • Grogan, D.W.1
  • 54
    • 79952803560 scopus 로고    scopus 로고
    • Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies
    • Guo, L., Brügger, K., Liu, C., Shah, S. A., Zheng, H., Zhu, Y., et al. (2011). Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J. Bacteriol. 193, 1672-1680. doi: 10.1128/JB.01487-10
    • (2011) J. Bacteriol , vol.193 , pp. 1672-1680
    • Guo, L.1    Brügger, K.2    Liu, C.3    Shah, S.A.4    Zheng, H.5    Zhu, Y.6
  • 55
    • 84855472279 scopus 로고    scopus 로고
    • Construction and transformation of a Thermotoga-E. coli shuttle vector
    • Han, D., Norris, S. M., and Xu, Z. (2012). Construction and transformation of a Thermotoga-E. coli shuttle vector. BMC Biotechnol. 12, 2. doi: 10.1186/1472-6750-12-2
    • (2012) BMC Biotechnol , vol.12 , pp. 2
    • Han, D.1    Norris, S.M.2    Xu, Z.3
  • 56
    • 84901475851 scopus 로고    scopus 로고
    • Natural transformation of Thermotoga sp. strain RQ7
    • Han, D., Xu, H., Puranik, R., and Xu, Z. (2014). Natural transformation of Thermotoga sp. strain RQ7. BMC Biotechnol. 14, 39-39. doi: 10.1186/1472-6750-14-39
    • (2014) BMC Biotechnol , vol.14 , pp. 39-39
    • Han, D.1    Xu, H.2    Puranik, R.3    Xu, Z.4
  • 57
    • 84899143900 scopus 로고    scopus 로고
    • Characterization and gene deletion analysis of four homologues of group 3 pyridine nucleotide disulfide oxidoreductases from Thermococcus kodakarensis
    • Harnvoravongchai, P., Kobori, H., Orita, I., Nakamura, S., Imanaka, T., and Fukui, T. (2014). Characterization and gene deletion analysis of four homologues of group 3 pyridine nucleotide disulfide oxidoreductases from Thermococcus kodakarensis. Extremophiles 18, 603-616. doi: 10.1007/s00792-014-0643-z
    • (2014) Extremophiles , vol.18 , pp. 603-616
    • Harnvoravongchai, P.1    Kobori, H.2    Orita, I.3    Nakamura, S.4    Imanaka, T.5    Fukui, T.6
  • 58
    • 77956972987 scopus 로고    scopus 로고
    • N-terminal fusion of a hyperthermophilic chitin-binding domain to xylose isomerase from Thermotoga neapolitana enhances kinetics and thermostability of both free and immobilized enzymes
    • Harris, J. M., Epting, K. L., and Kelly, R. M. (2010). N-terminal fusion of a hyperthermophilic chitin-binding domain to xylose isomerase from Thermotoga neapolitana enhances kinetics and thermostability of both free and immobilized enzymes. Biotechnol. Prog. 26, 993-1000. doi: 10.1002/btpr.416
    • (2010) Biotechnol. Prog , vol.26 , pp. 993-1000
    • Harris, J.M.1    Epting, K.L.2    Kelly, R.M.3
  • 59
    • 0035850879 scopus 로고    scopus 로고
    • Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker
    • Hashimoto, Y., Yano, T., Kuramitsu, S., and Kagamiyama, H. (2001). Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker. FEBS Lett. 506, 231-234. doi: 10.1016/S0014-5793(01)02926-X
    • (2001) FEBS Lett , vol.506 , pp. 231-234
    • Hashimoto, Y.1    Yano, T.2    Kuramitsu, S.3    Kagamiyama, H.4
  • 61
    • 84878655703 scopus 로고    scopus 로고
    • Biological conversion of carbon dioxide and hydrogen into liquid fuels and industrial chemicals
    • Hawkins, A. S., McTernan, P. M., Lian, H., Kelly, R. M., and Adams, M. W. W. (2013). Biological conversion of carbon dioxide and hydrogen into liquid fuels and industrial chemicals. Curr. Opin. Biotechnol. 24, 376-384. doi: 10.1016/j.copbio.2013.02.017
    • (2013) Curr. Opin. Biotechnol , vol.24 , pp. 376-384
    • Hawkins, A.S.1    McTernan, P.M.2    Lian, H.3    Kelly, R.M.4    Adams, M.W.W.5
  • 63
    • 0028471169 scopus 로고
    • The entire population of Thermus thermophilus cells is always competent at any growth phase
    • Hidaka, Y., Hasegawa, M., Nakahara, T., and Hoshino, T. (1994). The entire population of Thermus thermophilus cells is always competent at any growth phase. Biosci. Biotechnol. Biochem. 58, 1338-1339. doi: 10.1271/bbb.58.1338
    • (1994) Biosci. Biotechnol. Biochem , vol.58 , pp. 1338-1339
    • Hidaka, Y.1    Hasegawa, M.2    Nakahara, T.3    Hoshino, T.4
  • 64
    • 3242756028 scopus 로고    scopus 로고
    • Thermus thermophilus as a cell factory for the production of a thermophilic Mn-dependent catalase which fails to be synthesized in an active form in Escherichia coli
    • Hidalgo, A., Betancor, L., Moreno, R., Zafra, O., Cava, F., Fernández-Lafuente, R., et al. (2004). Thermus thermophilus as a cell factory for the production of a thermophilic Mn-dependent catalase which fails to be synthesized in an active form in Escherichia coli. Appl. Environ. Microbiol. 70, 3839-3844. doi: 10.1128/AEM.70.7.3839-3844.2004
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 3839-3844
    • Hidalgo, A.1    Betancor, L.2    Moreno, R.3    Zafra, O.4    Cava, F.5    Fernández-Lafuente, R.6
  • 65
    • 84870695619 scopus 로고    scopus 로고
    • Genetics techniques for Thermococcus kodakarensis
    • Hileman, T. H., and Santangelo, T. J. (2012). Genetics techniques for Thermococcus kodakarensis. Front. Microbiol. 3:195. doi: 10.3389/fmicb.2012.00195
    • (2012) Front. Microbiol , vol.3 , pp. 195
    • Hileman, T.H.1    Santangelo, T.J.2
  • 66
    • 80055032687 scopus 로고    scopus 로고
    • Homologous expression of a subcomplex of Pyrococcus furiosus hydrogenase that interacts with pyruvate ferredoxin oxidoreductase
    • Hopkins, R. C., Sun, J., Jenney, F. E. Jr., Chandrayan, S. K., Mcternan, P. M., and Adams, M. W. W. (2011). Homologous expression of a subcomplex of Pyrococcus furiosus hydrogenase that interacts with pyruvate ferredoxin oxidoreductase. PLoS ONE 6:e26569. doi: 10.1371/journal.pone.0026569
    • (2011) PLoS ONE , vol.6
    • Hopkins, R.C.1    Sun, J.2    Jenney, F.E.3    Chandrayan, S.K.4    Mcternan, P.M.5    Adams, M.W.W.6
  • 67
    • 0032730861 scopus 로고    scopus 로고
    • Directed evolution of thermostable kanamycin-resistance gene: a convenient selection marker for Thermus thermophilus
    • Hoseki, J., Yano, T., Koyama, Y., Kuramitsu, S., and Kagamiyama, H. (1999). Directed evolution of thermostable kanamycin-resistance gene: a convenient selection marker for Thermus thermophilus. J. Biochem. 126, 951-956. doi: 10.1093/oxfordjournals.jbchem.a022539
    • (1999) J. Biochem , vol.126 , pp. 951-956
    • Hoseki, J.1    Yano, T.2    Koyama, Y.3    Kuramitsu, S.4    Kagamiyama, H.5
  • 68
    • 0001960079 scopus 로고
    • Metallosphaera sedula gen, and sp. nov. represents a new genus of aerobic, metal-mobilizing, thermoacidophilic archaebacteria
    • Huber, G., Spinnler, C., Gambacorta, A., and Stetter, K. O. (1989). Metallosphaera sedula gen, and sp. nov. represents a new genus of aerobic, metal-mobilizing, thermoacidophilic archaebacteria. Syst. Appl. Microbiol. 12, 38-47. doi: 10.1016/S0723-2020(89)80038-4
    • (1989) Syst. Appl. Microbiol , vol.12 , pp. 38-47
    • Huber, G.1    Spinnler, C.2    Gambacorta, A.3    Stetter, K.O.4
  • 69
    • 0022522022 scopus 로고
    • Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90 C
    • Huber, R., Langworthy, T. A., König, H., Thomm, M., Woese, C. R., Sleytr, U. B., et al. (1986). Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90 C. Arch. Microbiol. 144, 324-333. doi: 10.1007/BF00409880
    • (1986) Arch. Microbiol , vol.144 , pp. 324-333
    • Huber, R.1    Langworthy, T.A.2    König, H.3    Thomm, M.4    Woese, C.R.5    Sleytr, U.B.6
  • 70
    • 0036356457 scopus 로고    scopus 로고
    • Catalyzing "hot". reactions: enzymes from hyperthermophilic archaea
    • Imanaka, T., and Atomi, H. (2002). Catalyzing "hot". reactions: enzymes from hyperthermophilic archaea. Chem. Rec. 2, 149-163. doi: 10.1002/tcr.10023
    • (2002) Chem. Rec , vol.2 , pp. 149-163
    • Imanaka, T.1    Atomi, H.2
  • 71
    • 0001218383 scopus 로고
    • Thermotoga Neapolitana new species of the extremely thermophilic eubacterial genus Thermotoga
    • Jannasch, H. W., Huber, R., Belkin, S., and Stetter, K. O. (1988). Thermotoga Neapolitana new species of the extremely thermophilic eubacterial genus Thermotoga. Arch. Microbiol. 150, 103-104. doi: 10.1007/BF00409725
    • (1988) Arch. Microbiol , vol.150 , pp. 103-104
    • Jannasch, H.W.1    Huber, R.2    Belkin, S.3    Stetter, K.O.4
  • 72
    • 0022970603 scopus 로고
    • Acetone-butanol fermenation revisited
    • Jones, D. T., and Woods, D. R. (1986). Acetone-butanol fermenation revisited. Microbiol. Rev. 50, 484-524.
    • (1986) Microbiol. Rev , vol.50 , pp. 484-524
    • Jones, D.T.1    Woods, D.R.2
  • 73
    • 0038460077 scopus 로고    scopus 로고
    • A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector
    • Jonuscheit, M., Martusewitsch, E., Stedman, K. M., and Schleper, C. (2003). A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector. Mol. Microbiol. 48, 1241-1252. doi: 10.1046/j.1365-2958.2003.03509.x
    • (2003) Mol. Microbiol , vol.48 , pp. 1241-1252
    • Jonuscheit, M.1    Martusewitsch, E.2    Stedman, K.M.3    Schleper, C.4
  • 74
    • 0014807745 scopus 로고
    • Genetic and physiological aspects of resistance to 5-fluoropyrimidines in Saccharomyces cerevisiae
    • Jund, R., and Lacroute, F. (1970). Genetic and physiological aspects of resistance to 5-fluoropyrimidines in Saccharomyces cerevisiae. J. Bacteriol. 102, 607-615.
    • (1970) J. Bacteriol , vol.102 , pp. 607-615
    • Jund, R.1    Lacroute, F.2
  • 75
    • 84940980657 scopus 로고    scopus 로고
    • Overproduction of the membrane-bound [NiFe]-hydrogenase in Thermococcus kodakarensis and its effect on hydrogen production
    • Kanai, T., Simons, J.-R., Tsukamoto, R., Nakajima, A., Omori, Y., Matsuoka, R., et al. (2015). Overproduction of the membrane-bound [NiFe]-hydrogenase in Thermococcus kodakarensis and its effect on hydrogen production. Front. Microbiol. 6:847. doi: 10.3389/fmicb.2015.00847
    • (2015) Front. Microbiol , vol.6 , pp. 847
    • Kanai, T.1    Simons, J.-R.2    Tsukamoto, R.3    Nakajima, A.4    Omori, Y.5    Matsuoka, R.6
  • 76
    • 66149130333 scopus 로고    scopus 로고
    • Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum". DSM 6725
    • Kataeva, I. A., Yang, S. J., Dam, P., Poole, F. L. II., Yin, Y., Zhou, F., et al. (2009). Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum". DSM 6725. J. Bacteriol. 191, 3760-3761. doi: 10.1128/JB.00256-09
    • (2009) J. Bacteriol , vol.191 , pp. 3760-3761
    • Kataeva, I.A.1    Yang, S.J.2    Dam, P.3    Poole, F.L.4    Yin, Y.5    Zhou, F.6
  • 77
    • 84914126900 scopus 로고    scopus 로고
    • A hybrid synthetic pathway for butanol production by a hyperthermophilic microbe
    • Keller, M. W., Lipscomb, G. L., Loder, A. J., Schut, G. J., Kelly, R. M., and Adams, M. W. (2015). A hybrid synthetic pathway for butanol production by a hyperthermophilic microbe. Metab. Eng. 27, 101-106. doi: 10.1016/j.ymben.2014.11.004
    • (2015) Metab. Eng , vol.27 , pp. 101-106
    • Keller, M.W.1    Lipscomb, G.L.2    Loder, A.J.3    Schut, G.J.4    Kelly, R.M.5    Adams, M.W.6
  • 78
    • 84876029446 scopus 로고    scopus 로고
    • Exploiting microbial hyperthermophilicity to produce an industrial chemical, using hydrogen and carbon dioxide
    • Keller, M. W., Schut, G. J., Lipscomb, G. L., Menon, A. L., Iwuchukwu, I. J., Leuko, T. T., et al. (2013). Exploiting microbial hyperthermophilicity to produce an industrial chemical, using hydrogen and carbon dioxide. Proc. Natl. Acad. Sci. U.S.A. 110, 5840-5845. doi: 10.1073/pnas.1222607110
    • (2013) Proc. Natl. Acad. Sci. U.S.A , vol.110 , pp. 5840-5845
    • Keller, M.W.1    Schut, G.J.2    Lipscomb, G.L.3    Menon, A.L.4    Iwuchukwu, I.J.5    Leuko, T.T.6
  • 79
    • 84938874718 scopus 로고    scopus 로고
    • Production of lignofuels and electrofuels by extremely thermophilic microbes
    • Keller, M., Loder, A. J., Basen, M., Izquierdo, J., Kelly, R. M., and Adams, M. W. (2014). Production of lignofuels and electrofuels by extremely thermophilic microbes. Biofuels 5, 499-515. doi: 10.1080/17597269.2014.996729
    • (2014) Biofuels , vol.5 , pp. 499-515
    • Keller, M.1    Loder, A.J.2    Basen, M.3    Izquierdo, J.4    Kelly, R.M.5    Adams, M.W.6
  • 81
    • 70350459999 scopus 로고    scopus 로고
    • Malonic Semialdehyde Reductase, succinic semialdehyde reductase, and succinyl-coenzyme a reductase from Metallosphaera sedula: enzymes of the Autotrophic 3-Hydroxypropionate/4-Hydroxybutyrate Cycle in Sulfolobales
    • Kockelkorn, D., and Fuchs, G. (2009). Malonic Semialdehyde Reductase, succinic semialdehyde reductase, and succinyl-coenzyme a reductase from Metallosphaera sedula: enzymes of the Autotrophic 3-Hydroxypropionate/4-Hydroxybutyrate Cycle in Sulfolobales. J. Bacteriol. 191, 6352-6362. doi: 10.1128/JB.00794-09
    • (2009) J. Bacteriol , vol.191 , pp. 6352-6362
    • Kockelkorn, D.1    Fuchs, G.2
  • 82
    • 0022448655 scopus 로고
    • Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp
    • Koyama, Y., Hoshino, T., Tomizuka, N., and Furukawa, K. (1986). Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp. J. Bacteriol. 166, 338-340.
    • (1986) J. Bacteriol , vol.166 , pp. 338-340
    • Koyama, Y.1    Hoshino, T.2    Tomizuka, N.3    Furukawa, K.4
  • 83
    • 84873333675 scopus 로고    scopus 로고
    • Genetic engineering of Pyrococcus furiosus to use chitin as a carbon source
    • Kreuzer, M., Schmutzler, K., Waege, I., Thomm, M., and Hausner, W. (2013). Genetic engineering of Pyrococcus furiosus to use chitin as a carbon source. BMC Biotechnol. 13:9. doi: 10.1186/1472-6750-13-9
    • (2013) BMC Biotechnol , vol.13 , pp. 9
    • Kreuzer, M.1    Schmutzler, K.2    Waege, I.3    Thomm, M.4    Hausner, W.5
  • 84
    • 0018703475 scopus 로고
    • Resistance to 5-fluoroorotic acid and pyrimidine auxotrophy: a new bidirectional selective system for mammalian cells
    • Krooth, R., Hsiao, W.-L., and Potvin, B. (1979). Resistance to 5-fluoroorotic acid and pyrimidine auxotrophy: a new bidirectional selective system for mammalian cells. Somat. Cell Genet. 5, 551-569. doi: 10.1007/BF01542694
    • (1979) Somat. Cell Genet , vol.5 , pp. 551-569
    • Krooth, R.1    Hsiao, W.-L.2    Potvin, B.3
  • 85
    • 84904291277 scopus 로고    scopus 로고
    • The microbial cell-functional unit for energy dependent multistep biocatalysis
    • Ladkau, N., Schmid, A., and Bühler, B. (2014). The microbial cell-functional unit for energy dependent multistep biocatalysis. Curr. Opin. Biotechnol. 30, 178-189. doi: 10.1016/j.copbio.2014.06.003
    • (2014) Curr. Opin. Biotechnol , vol.30 , pp. 178-189
    • Ladkau, N.1    Schmid, A.2    Bühler, B.3
  • 86
    • 0024706289 scopus 로고
    • Shuttle vectors for the archaebacterium Halobacterium volcanii
    • Lam, W. L., and Doolittle, W. F. (1989). Shuttle vectors for the archaebacterium Halobacterium volcanii. Proc. Natl. Acad. Sci. U.S.A. 86, 5478-5482. doi: 10.1073/pnas.86.14.5478
    • (1989) Proc. Natl. Acad. Sci. U.S.A , vol.86 , pp. 5478-5482
    • Lam, W.L.1    Doolittle, W.F.2
  • 87
    • 0030814693 scopus 로고    scopus 로고
    • Thermoanaerobacter mathranii sp. nov., an ethanol-producing, extremely thermophilic anaerobic bacterium from a hot spring in Iceland
    • Larsen, L., Nielsen, P., and Ahring, B. K. (1997). Thermoanaerobacter mathranii sp. nov., an ethanol-producing, extremely thermophilic anaerobic bacterium from a hot spring in Iceland. Arch. Microbiol. 168, 114-119. doi: 10.1007/s002030050476
    • (1997) Arch. Microbiol , vol.168 , pp. 114-119
    • Larsen, L.1    Nielsen, P.2    Ahring, B.K.3
  • 88
    • 84924040473 scopus 로고    scopus 로고
    • Engineering cellular redox balance in Saccharomyces cerevisiae for improved production of L-lactic acid
    • Lee, J. Y., Kang, C. D., Lee, S. H., Park, Y. K., and Cho, K. M. (2015). Engineering cellular redox balance in Saccharomyces cerevisiae for improved production of L-lactic acid. Biotechnol. Bioeng. 112, 751-758. doi: 10.1002/bit.25488
    • (2015) Biotechnol. Bioeng , vol.112 , pp. 751-758
    • Lee, J.Y.1    Kang, C.D.2    Lee, S.H.3    Park, Y.K.4    Cho, K.M.5
  • 89
    • 0035424955 scopus 로고    scopus 로고
    • Engineering proteins for thermostability: the use of sequence alignments versus rational design and directed evolution
    • Lehmann, M., and Wyss, M. (2001). Engineering proteins for thermostability: the use of sequence alignments versus rational design and directed evolution. Curr. Opin. Biotech. 12, 371-375. doi: 10.1016/S0958-1669(00)00229-9
    • (2001) Curr. Opin. Biotech , vol.12 , pp. 371-375
    • Lehmann, M.1    Wyss, M.2
  • 90
    • 84911898574 scopus 로고    scopus 로고
    • Genetic analysis of lipolytic activities in Thermus thermophilus HB27
    • Leis, B., Angelov, A., Li, H., and Liebl, W. (2014). Genetic analysis of lipolytic activities in Thermus thermophilus HB27. J. Biotechnol. 191, 150-157. doi: 10.1016/j.jbiotec.2014.07.448
    • (2014) J. Biotechnol , vol.191 , pp. 150-157
    • Leis, B.1    Angelov, A.2    Li, H.3    Liebl, W.4
  • 91
    • 0342367772 scopus 로고
    • Isolation of a thermostable enzyme variant by cloning and selection in a thermophile
    • Liao, H., Mckenzie, T., and Hageman, R. (1986). Isolation of a thermostable enzyme variant by cloning and selection in a thermophile. Proc. Natl. Acad. Sci. U.S.A. 83, 576-580. doi: 10.1073/pnas.83.3.576
    • (1986) Proc. Natl. Acad. Sci. U.S.A , vol.83 , pp. 576-580
    • Liao, H.1    Mckenzie, T.2    Hageman, R.3
  • 92
    • 84893454556 scopus 로고    scopus 로고
    • Engineering hydrogen gas production from formate in a hyperthermophile by heterologous production of an 18-subunit membrane-bound complex
    • Lipscomb, G. L., Schut, G. J., Thorgersen, M. P., Nixon, W. J., Kelly, R. M., and Adams, M. W. W. (2014). Engineering hydrogen gas production from formate in a hyperthermophile by heterologous production of an 18-subunit membrane-bound complex. J. Biol. Chem. 289, 2873-2879. doi: 10.1074/jbc. M113.530725
    • (2014) J. Biol. Chem , vol.289 , pp. 2873-2879
    • Lipscomb, G.L.1    Schut, G.J.2    Thorgersen, M.P.3    Nixon, W.J.4    Kelly, R.M.5    Adams, M.W.W.6
  • 93
    • 79953288906 scopus 로고    scopus 로고
    • Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases
    • Lipscomb, G. L., Stirrett, K., Schut, G. J., Yang, F., Jenney, F. E., Scott, R. A., et al. (2011). Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases. Appl. Environ. Microbiol. 77, 2232-2238. doi: 10.1128/AEM.02624-10
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 2232-2238
    • Lipscomb, G.L.1    Stirrett, K.2    Schut, G.J.3    Yang, F.4    Jenney, F.E.5    Scott, R.A.6
  • 94
    • 84938567736 scopus 로고    scopus 로고
    • Model-driven intracellular redox status modulation for increasing isobutanol production in Escherichia coli
    • Liu, J., Qi, H., Wang, C., and Wen, J. (2015). Model-driven intracellular redox status modulation for increasing isobutanol production in Escherichia coli. Biotechnol. Biofuels 8, 108. doi: 10.1186/s13068-015-0291-2
    • (2015) Biotechnol. Biofuels , vol.8 , pp. 108
    • Liu, J.1    Qi, H.2    Wang, C.3    Wen, J.4
  • 95
    • 84870721749 scopus 로고    scopus 로고
    • Metal resistance and lithoautotrophy in the extreme thermoacidophile Metallosphaera sedula
    • Maezato, Y., Johnson, T., Mccarthy, S., Dana, K., and Blum, P. (2012). Metal resistance and lithoautotrophy in the extreme thermoacidophile Metallosphaera sedula. J. Bacteriol. 194, 6856-6863. doi: 10.1128/JB.01413-12
    • (2012) J. Bacteriol , vol.194 , pp. 6856-6863
    • Maezato, Y.1    Johnson, T.2    Mccarthy, S.3    Dana, K.4    Blum, P.5
  • 96
    • 6044224979 scopus 로고    scopus 로고
    • Microbial export of lactic and 3-hydroxypropanoic acid: implications for industrial fermentation processes
    • Maris, A. J. A. V., Konings, W. N., Dijken, J. P. V., and Pronk, J. T. (2004). Microbial export of lactic and 3-hydroxypropanoic acid: implications for industrial fermentation processes. Metab. Eng. 6, 245-255. doi: 10.1016/j.ymben.2004.05.001
    • (2004) Metab. Eng , vol.6 , pp. 245-255
    • Maris, A.J.A.V.1    Konings, W.N.2    Dijken, J.P.V.3    Pronk, J.T.4
  • 97
    • 34147158720 scopus 로고    scopus 로고
    • Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance
    • Matsumi, R., Manabe, K., Fukui, T., Atomi, H., and Imanaka, T. (2007). Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance. J. Bacteriol. 189, 2683-2691. doi: 10.1128/JB.01692-06
    • (2007) J. Bacteriol , vol.189 , pp. 2683-2691
    • Matsumi, R.1    Manabe, K.2    Fukui, T.3    Atomi, H.4    Imanaka, T.5
  • 98
    • 0022403302 scopus 로고
    • Screening for thermostable mutant of kanamycin nucleotidyltransferase by the use of a transformation system for a thermophile, Bacillus stearothermophilus
    • Matsumura, M., and Aiba, S. (1985). Screening for thermostable mutant of kanamycin nucleotidyltransferase by the use of a transformation system for a thermophile, Bacillus stearothermophilus. J. Biol. Chem. 260, 15298-15303.
    • (1985) J. Biol. Chem , vol.260 , pp. 15298-15303
    • Matsumura, M.1    Aiba, S.2
  • 99
    • 12244256788 scopus 로고    scopus 로고
    • High-level overproduction of His-tagged Tth DNA polymerase in Thermus thermophilus
    • Moreno, R., Haro, A., Castellanos, A., and Berenguer, J. (2005). High-level overproduction of His-tagged Tth DNA polymerase in Thermus thermophilus. Appl. Environ. Microbiol. 71, 591-593. doi: 10.1128/AEM.71.1.591-593.2005
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 591-593
    • Moreno, R.1    Haro, A.2    Castellanos, A.3    Berenguer, J.4
  • 100
    • 0027946790 scopus 로고
    • Purification and characterization of a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp
    • Morikawa, M., Izawa, Y., Rashid, N., Hoaki, T., and Imanaka, T. (1994). Purification and characterization of a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp. Appl. Environ. Microbol. 60, 4559-4566.
    • (1994) Appl. Environ. Microbol , vol.60 , pp. 4559-4566
    • Morikawa, M.1    Izawa, Y.2    Rashid, N.3    Hoaki, T.4    Imanaka, T.5
  • 101
    • 70249146096 scopus 로고    scopus 로고
    • "Short-chain". a-1,4-glucan phosphorylase having a truncated N-terminal domain: functional expression and characterization of the enzyme from Sulfolobus solfataricus
    • Mueller, M., Takemasa, R., Schwarz, A., Atomi, H., and Nidetzky, B. (2009). "Short-chain". a-1,4-glucan phosphorylase having a truncated N-terminal domain: functional expression and characterization of the enzyme from Sulfolobus solfataricus. Biochim. Biophys. Acta 1794, 1709-1714. doi: 10.1016/j.bbapap.2009.08.006
    • (2009) Biochim. Biophys. Acta , vol.1794 , pp. 1709-1714
    • Mueller, M.1    Takemasa, R.2    Schwarz, A.3    Atomi, H.4    Nidetzky, B.5
  • 102
    • 27644459857 scopus 로고    scopus 로고
    • In vivo directed evolution for thermostabilization of Escherichia coli hygromycin B phosphotransferase and the use of the gene as a selection marker in the host-vector system of Thermus thermophilus
    • Nakamura, A., Takakura, Y., Kobayashi, H., and Hoshino, T. (2005). In vivo directed evolution for thermostabilization of Escherichia coli hygromycin B phosphotransferase and the use of the gene as a selection marker in the host-vector system of Thermus thermophilus. J. Biosci. Bioeng. 100, 158-163. doi: 10.1263/jbb.100.158
    • (2005) J. Biosci. Bioeng , vol.100 , pp. 158-163
    • Nakamura, A.1    Takakura, Y.2    Kobayashi, H.3    Hoshino, T.4
  • 103
    • 0033609333 scopus 로고    scopus 로고
    • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
    • Nelson, K. E., Clayton, R. A., Gill, S. R., Gwinn, M. L., Dodson, R. J., Haft, D. H., et al. (1999). Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399, 323-329. doi: 10.1038/20601
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1    Clayton, R.A.2    Gill, S.R.3    Gwinn, M.L.4    Dodson, R.J.5    Haft, D.H.6
  • 104
    • 0026546846 scopus 로고
    • Autotrophic growth and inorganic sulphur compound oxidation by Sulfolobus sp. in chemostat culture
    • Nixon, A., and Norris, P. R. (1992). Autotrophic growth and inorganic sulphur compound oxidation by Sulfolobus sp. in chemostat culture. Arch. Microbiol. 157, 155-160.
    • (1992) Arch. Microbiol , vol.157 , pp. 155-160
    • Nixon, A.1    Norris, P.R.2
  • 105
    • 77957830494 scopus 로고    scopus 로고
    • An extreme thermophile, Thermus thermophilus, is a polyploid bacterium
    • Ohtani, N., Tomita, M., and Itaya, M. (2010). An extreme thermophile, Thermus thermophilus, is a polyploid bacterium. J. Bacteriol. 192, 5499-5505. doi: 10.1128/JB.00662-10
    • (2010) J. Bacteriol , vol.192 , pp. 5499-5505
    • Ohtani, N.1    Tomita, M.2    Itaya, M.3
  • 106
    • 0015955554 scopus 로고
    • Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a nonsporulating thermophilic bacterium from a Japanese thermal spa
    • Oshima, T., and Imahori, K. (1974). Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a nonsporulating thermophilic bacterium from a Japanese thermal spa. Int. J. Syst. Bacteriol. 24, 102-112. doi: 10.1099/00207713-24-1-102
    • (1974) Int. J. Syst. Bacteriol , vol.24 , pp. 102-112
    • Oshima, T.1    Imahori, K.2
  • 107
    • 84866173365 scopus 로고    scopus 로고
    • A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus
    • Peng, N., Deng, L., Mei, Y., Jiang, D., Hu, Y., Awayez, M., et al. (2012). A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus. Appl. Environ. Microbiol. 78, 5630-5637. doi: 10.1128/AEM.00855-12
    • (2012) Appl. Environ. Microbiol , vol.78 , pp. 5630-5637
    • Peng, N.1    Deng, L.2    Mei, Y.3    Jiang, D.4    Hu, Y.5    Awayez, M.6
  • 110
    • 84884230123 scopus 로고    scopus 로고
    • The wonderful world of archaeal viruses
    • Prangishvili, D. (2013). The wonderful world of archaeal viruses. Annu. Rev. Microbiol. 67, 565-585. doi: 10.1146/annurev-micro-092412-155633
    • (2013) Annu. Rev. Microbiol , vol.67 , pp. 565-585
    • Prangishvili, D.1
  • 111
    • 3042825336 scopus 로고    scopus 로고
    • Cold-shock induced high-yield protein production in Escherichia coli
    • Qing, G., Ma, L. C., Khorchid, A., Swapna, G. V., Mal, T. K., Takayama, M. M., et al. (2004). Cold-shock induced high-yield protein production in Escherichia coli. Nat. Biotechnol. 22, 877-882. doi: 10.1038/nbt984
    • (2004) Nat. Biotechnol , vol.22 , pp. 877-882
    • Qing, G.1    Ma, L.C.2    Khorchid, A.3    Swapna, G.V.4    Mal, T.K.5    Takayama, M.M.6
  • 112
    • 0031750103 scopus 로고    scopus 로고
    • Anaerobic growth, a property horizontally transferred by an Hfr-like mechanism among extreme thermophiles
    • Ramírez-Arcos, S., Fernández-Herrero, L. A., Marín, I., and Berenguer, J. (1998). Anaerobic growth, a property horizontally transferred by an Hfr-like mechanism among extreme thermophiles. J. Bacteriol. 180, 3137-3143.
    • (1998) J. Bacteriol , vol.180 , pp. 3137-3143
    • Ramírez-Arcos, S.1    Fernández-Herrero, L.A.2    Marín, I.3    Berenguer, J.4
  • 113
    • 84899918983 scopus 로고    scopus 로고
    • Renewable Fuels Association [Accessed August 19, 2015]
    • RFA (2014). World Fuel Ethanol Production [Online]. Renewable Fuels Association. Available online at: http://www.ethanolrfa.org/resources/industry/statistics/world/[Accessed August 19, 2015].
    • (2014) World Fuel Ethanol Production
  • 114
    • 0026778048 scopus 로고
    • Foreign gene expression in yeast: a review
    • Romanos, M. A., Scorer, C. A., and Clare, J. J. (1992). Foreign gene expression in yeast: a review. Yeast 8, 423-488. doi: 10.1002/yea.320080602
    • (1992) Yeast , vol.8 , pp. 423-488
    • Romanos, M.A.1    Scorer, C.A.2    Clare, J.J.3
  • 115
    • 84925489417 scopus 로고    scopus 로고
    • Different effects of MglA and MglB on pilus-mediated functions and natural competence in Thermus thermophilus
    • Salzer, R., Joos, F., and Averhoff, B. (2015a). Different effects of MglA and MglB on pilus-mediated functions and natural competence in Thermus thermophilus. Extremophiles 19, 261-267. doi: 10.1007/s00792-014-0711-4
    • (2015) Extremophiles , vol.19 , pp. 261-267
    • Salzer, R.1    Joos, F.2    Averhoff, B.3
  • 116
    • 84956584381 scopus 로고    scopus 로고
    • The Thermus thermophilus comEA/comEC operon is associated with DNA binding and regulation of the DNA translocator and type IV pili
    • [Epub ahead of print]
    • Salzer, R., Kern, T., Joos, F., and Averhoff, B. (2015b). The Thermus thermophilus comEA/comEC operon is associated with DNA binding and regulation of the DNA translocator and type IV pili. Environ. Microbiol. doi: 10.1111/1462-2920.12820. [Epub ahead of print].
    • (2015) Environ. Microbiol
    • Salzer, R.1    Kern, T.2    Joos, F.3    Averhoff, B.4
  • 117
    • 80051570066 scopus 로고    scopus 로고
    • 'Genetic tools and manipulations of the hyperthermophilic heterotrophic archaeon Thermococcus kodakarensis'
    • eds K. Horikoshi, G. Antranikian, A. T. Bull, F. T. Robb, and K. O. Stetter (New York, NY: Springer)
    • Santangelo, T. J., and Reeve, D. J. N. (2011). "Genetic tools and manipulations of the hyperthermophilic heterotrophic archaeon Thermococcus kodakarensis". in Extremophiles Handbook, eds K. Horikoshi, G. Antranikian, A. T. Bull, F. T. Robb, and K. O. Stetter (New York, NY: Springer), 567-582.
    • (2011) Extremophiles Handbook , pp. 567-582
    • Santangelo, T.J.1    Reeve, D.J.N.2
  • 118
    • 80051568301 scopus 로고    scopus 로고
    • Deletion of alternative pathways for reductant recycling in Thermococcus kodakarensis increases hydrogen production
    • Santangelo, T. J., Cubonvá, L, and Reeve, J. N. (2011). Deletion of alternative pathways for reductant recycling in Thermococcus kodakarensis increases hydrogen production. Mol. Microbiol. 81, 897-911. doi: 10.1111/j.1365-2958.2011.07734.x
    • (2011) Mol. Microbiol , vol.81 , pp. 897-911
    • Santangelo, T.J.1    Cubonvá, L.2    Reeve, J.N.3
  • 119
    • 76649127737 scopus 로고    scopus 로고
    • Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology
    • Santangelo, T. J., Cubonová, L., and Reeve, J. N. (2010). Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology. Appl. Environ. Microbiol. 76, 1044-1052. doi: 10.1128/AEM.02497-09
    • (2010) Appl. Environ. Microbiol , vol.76 , pp. 1044-1052
    • Santangelo, T.J.1    Cubonová, L.2    Reeve, J.N.3
  • 120
    • 0037215528 scopus 로고    scopus 로고
    • Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1
    • Sato, T., Fukui, T., Atomi, H., and Imanaka, T. (2003). Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J. Bacteriol. 185, 210-220. doi: 10.1128/JB.185.1.210-220.2003
    • (2003) J. Bacteriol , vol.185 , pp. 210-220
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 121
    • 22144443201 scopus 로고    scopus 로고
    • Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis
    • Sato, T., Fukui, T., Atomi, H., and Imanaka, T. (2005). Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis. Appl. Environ. Microbiol. 71, 3889-3899. doi: 10.1128/AEM.71.7.3889-3899.2005
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 3889-3899
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 122
    • 84873290195 scopus 로고    scopus 로고
    • The modular respiratory complexes involved in hydrogen and sulfur metabolism by heterotrophic hyperthermophilic archaea and their evolutionary implications
    • Schut, G. J., Boyd, E. S., Peters, J. W., and Adams, M. W. W. (2013). The modular respiratory complexes involved in hydrogen and sulfur metabolism by heterotrophic hyperthermophilic archaea and their evolutionary implications. FEMS Microbiol. Rev. 37, 182-203. doi: 10.1111/j.1574-6976.2012.00346.x
    • (2013) FEMS Microbiol. Rev , vol.37 , pp. 182-203
    • Schut, G.J.1    Boyd, E.S.2    Peters, J.W.3    Adams, M.W.W.4
  • 123
    • 33748317821 scopus 로고    scopus 로고
    • Characterization of DNA transport in the thermophilic bacterium Thermus thermophilus HB27
    • Schwarzenlander, C., and Averhoff, B. (2006). Characterization of DNA transport in the thermophilic bacterium Thermus thermophilus HB27. FEBS J. 273, 4210-4218. doi: 10.1111/j.1742-4658.2006.05416.x
    • (2006) FEBS J , vol.273 , pp. 4210-4218
    • Schwarzenlander, C.1    Averhoff, B.2
  • 124
    • 84943338585 scopus 로고    scopus 로고
    • A New Class of Tungsten-Containing Oxidoreductase in the Genus of the Plant Biomass-Degrading, Thermophilic Bacteria Caldicellulosiruptor
    • [Epub ahead of print]
    • Scott, I. M., Rubinstein, G. M., Lipscomb, G. L., Basen, M., Schut, G. J., Rhaesa, A. M., et al. (2015). A New Class of Tungsten-Containing Oxidoreductase in the Genus of the Plant Biomass-Degrading, Thermophilic Bacteria Caldicellulosiruptor. Appl. Environ. Microbiol. doi: 10.1128/aem.01634-15. [Epub ahead of print].
    • (2015) Appl. Environ. Microbiol
    • Scott, I.M.1    Rubinstein, G.M.2    Lipscomb, G.L.3    Basen, M.4    Schut, G.J.5    Rhaesa, A.M.6
  • 126
    • 59749097323 scopus 로고    scopus 로고
    • Genetic analyses in the hyperthermophilic archaeon Sulfolobus islandicus
    • She, Q., Zhang, C., Deng, L., Peng, N., Chen, Z., and Liang, Y. X. (2009). Genetic analyses in the hyperthermophilic archaeon Sulfolobus islandicus. Biochem. Soc. Trans. 37, 92-96. doi: 10.1042/BST0370092
    • (2009) Biochem. Soc. Trans , vol.37 , pp. 92-96
    • She, Q.1    Zhang, C.2    Deng, L.3    Peng, N.4    Chen, Z.5    Liang, Y.X.6
  • 128
    • 84878656888 scopus 로고    scopus 로고
    • From protein engineering to immobilization: promising strategies for the upgrade of industrial enzymes
    • Singh, R. K., Tiwari, M. K., Singh, R., and Lee, J. K. (2013). From protein engineering to immobilization: promising strategies for the upgrade of industrial enzymes. Int. J. Mol. Sci. 14, 1232-1277. doi: 10.3390/ijms14011232
    • (2013) Int. J. Mol. Sci , vol.14 , pp. 1232-1277
    • Singh, R.K.1    Tiwari, M.K.2    Singh, R.3    Lee, J.K.4
  • 129
    • 10944256640 scopus 로고    scopus 로고
    • Bacterial contaminants of fuel ethanol production
    • Skinner, K. A., and Leathers, T. D. (2004). Bacterial contaminants of fuel ethanol production. J. Ind. Microbiol. Biotechnol. 31, 401-408. doi: 10.1007/s10295-004-0159-0
    • (2004) J. Ind. Microbiol. Biotechnol , vol.31 , pp. 401-408
    • Skinner, K.A.1    Leathers, T.D.2
  • 130
    • 68649092225 scopus 로고    scopus 로고
    • "Historical perspective of biofuels: learning from the past to rediscover the future
    • Songstad, D. D., Lakshmanan, P., Chen, J., Gibbons, W., Hughes, S., and Nelson, R. (2009). "Historical perspective of biofuels: learning from the past to rediscover the future. In Vitro Cell. Dev. Biol. 45, 189-192. doi: 10.1007/s11627-009-9218-6
    • (2009) In Vitro Cell. Dev. Biol , vol.45 , pp. 189-192
    • Songstad, D.D.1    Lakshmanan, P.2    Chen, J.3    Gibbons, W.4    Hughes, S.5    Nelson, R.6
  • 131
    • 84887026071 scopus 로고    scopus 로고
    • Recent advances in rational approaches for enzyme engineering
    • Steiner, K., and Schwab, H. (2012). Recent advances in rational approaches for enzyme engineering. Comput. Struct. Biotechnol. J. 2:e201209010. doi: 10.5936/csbj.201209010
    • (2012) Comput. Struct. Biotechnol. J , vol.2
    • Steiner, K.1    Schwab, H.2
  • 132
    • 0025259020 scopus 로고
    • Anaerocellum thermophilum gen. nov. sp. nov.: an extreme thermophilic celluloytic eubacterium isolated from hot springs in the valley of geysers
    • Svetlichnyi, V. A., Svetlichnaya, T. P., Chernykh, N. A., and Zavarzin, G. A. (1990). Anaerocellum thermophilum gen. nov. sp. nov.: an extreme thermophilic celluloytic eubacterium isolated from hot springs in the valley of geysers. Mikrobiologiya 59, 871-879.
    • (1990) Mikrobiologiya , vol.59 , pp. 871-879
    • Svetlichnyi, V.A.1    Svetlichnaya, T.P.2    Chernykh, N.A.3    Zavarzin, G.A.4
  • 133
    • 84902513043 scopus 로고    scopus 로고
    • 13C-metabolic flux analysis of the extremophile Thermus thermophilus HB8
    • 13C-metabolic flux analysis of the extremophile Thermus thermophilus HB8. Metab. Eng. 24, 173-180. doi: 10.1016/j.ymben.2014.05.013
    • (2014) Metab. Eng , vol.24 , pp. 173-180
    • Swarup, A.1    Lu, J.2    Dewoody, K.C.3    Antoniewicz, M.R.4
  • 134
    • 79953282591 scopus 로고    scopus 로고
    • Thermococcus kodakarensis as a host for gene expression and protein secretion
    • Takemasa, R., Yokooji, Y., Yamatsu, A., Atomi, H., and Imanaka, T. (2011). Thermococcus kodakarensis as a host for gene expression and protein secretion. Appl. Environ. Microbiol. 77, 2392-2398. doi: 10.1128/AEM.01005-10
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 2392-2398
    • Takemasa, R.1    Yokooji, Y.2    Yamatsu, A.3    Atomi, H.4    Imanaka, T.5
  • 135
    • 0033047665 scopus 로고    scopus 로고
    • An efficient gene replacement and deletion system for an extreme thermophile, Thermus thermophilus
    • Tamakoshi, M., Yaoi, T., Oshima, T., and Yamagishi, A. (1999). An efficient gene replacement and deletion system for an extreme thermophile, Thermus thermophilus. FEMS Microbiol. Lett. 173, 431-437. doi: 10.1111/j.1574-6968.1999.tb13535.x
    • (1999) FEMS Microbiol. Lett , vol.173 , pp. 431-437
    • Tamakoshi, M.1    Yaoi, T.2    Oshima, T.3    Yamagishi, A.4
  • 136
    • 79960077518 scopus 로고    scopus 로고
    • Genetic tool development underpins recent advances in thermophilic whole-cell biocatalysts
    • Taylor, M. P., Van Zyl, L., Tuffin, I. M., Leak, D. J., and Cowan, D. A. (2011). Genetic tool development underpins recent advances in thermophilic whole-cell biocatalysts. Microb. Biotechnol. 4, 438-448. doi: 10.1111/j.1751-7915.2010.00246.x
    • (2011) Microb. Biotechnol , vol.4 , pp. 438-448
    • Taylor, M.P.1    Van Zyl, L.2    Tuffin, I.M.3    Leak, D.J.4    Cowan, D.A.5
  • 137
    • 84893443107 scopus 로고    scopus 로고
    • Deletion of acetyl-CoA synthetases I and II increases production of 3-hydroxypropionate by the metabolically-engineered hyperthermophile Pyrococcus furiosus
    • Thorgersen, M. P., Lipscomb, G. L., Schut, G. J., Kelly, R. M., and Adams, M. W. W. (2014). Deletion of acetyl-CoA synthetases I and II increases production of 3-hydroxypropionate by the metabolically-engineered hyperthermophile Pyrococcus furiosus. Metab. Eng. 22, 83-88. doi: 10.1016/j.ymben.2013.12.006
    • (2014) Metab. Eng , vol.22 , pp. 83-88
    • Thorgersen, M.P.1    Lipscomb, G.L.2    Schut, G.J.3    Kelly, R.M.4    Adams, M.W.W.5
  • 138
    • 57149141940 scopus 로고    scopus 로고
    • Separation technologies for the recovery and dehydration of alcohols from fermentation broths
    • Vane, L. M. (2008). Separation technologies for the recovery and dehydration of alcohols from fermentation broths. Biofuels Bioproducts Biorefining 2, 553-588. doi: 10.1002/bbb.108
    • (2008) Biofuels Bioproducts Biorefining , vol.2 , pp. 553-588
    • Vane, L.M.1
  • 139
    • 77953714257 scopus 로고    scopus 로고
    • Hydrogen production by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal
    • Verhaart, M. R. A., Bielen, A. A. M., van der Oost, J., Stams, A. J. M., and Kengen, S. W. M. (2010). Hydrogen production by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal. Environ. Technol. 31, 993-1003. doi: 10.1080/09593331003710244
    • (2010) Environ. Technol , vol.31 , pp. 993-1003
    • Verhaart, M.R.A.1    Bielen, A.A.M.2    van der Oost, J.3    Stams, A.J.M.4    Kengen, S.W.M.5
  • 140
    • 0035098779 scopus 로고    scopus 로고
    • Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability
    • Vieille, C., and Zeikus, G. J. (2001). Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol. Mol. Biol. R 65, 1-43. doi: 10.1128/MMBR.65.1.1-43.2001
    • (2001) Microbiol. Mol. Biol. R , vol.65 , pp. 1-43
    • Vieille, C.1    Zeikus, G.J.2
  • 141
    • 4544273205 scopus 로고    scopus 로고
    • The Sustainability of NatureWorks™ Polylactide Polymers and Ingeo™ Polylactide Fibers: an Update of the Future
    • Vink, E. T. H., Rábago, K. R., Glassner, D. A., Springs, B., O'connor, R. P., Kolstad, J., et al. (2004). The Sustainability of NatureWorks™ Polylactide Polymers and Ingeo™ Polylactide Fibers: an Update of the Future. Macromol. Biosci. 4, 551-564. doi: 10.1002/mabi.200400023
    • (2004) Macromol. Biosci , vol.4 , pp. 551-564
    • Vink, E.T.H.1    Rábago, K.R.2    Glassner, D.A.3    Springs, B.4    O'connor, R.P.5    Kolstad, J.6
  • 142
    • 77952257912 scopus 로고    scopus 로고
    • Shuttle vector-based transformation system for Pyrococcus furiosus
    • Waege, I., Schmid, G., Thumann, S., Thomm, M., and Hausner, W. (2010). Shuttle vector-based transformation system for Pyrococcus furiosus. Appl. Environ. Microbiol. 76, 3308-3313. doi: 10.1128/AEM.01951-09
    • (2010) Appl. Environ. Microbiol , vol.76 , pp. 3308-3313
    • Waege, I.1    Schmid, G.2    Thumann, S.3    Thomm, M.4    Hausner, W.5
  • 143
    • 84867081093 scopus 로고    scopus 로고
    • Versatile genetic tool box for the crenarchaeote Sulfolobus acidocaldarius
    • Wagner, M., Van Wolferen, M., Wagner, A., Lassak, K., Meyer, B. H., Reimann, J., et al. (2012). Versatile genetic tool box for the crenarchaeote Sulfolobus acidocaldarius. Front. Microbiol. 3:214. doi: 10.3389/fmicb.2012.00214
    • (2012) Front. Microbiol , vol.3 , pp. 214
    • Wagner, M.1    Van Wolferen, M.2    Wagner, A.3    Lassak, K.4    Meyer, B.H.5    Reimann, J.6
  • 144
    • 11144251737 scopus 로고    scopus 로고
    • Cold shock of a hyperthermophilic archaeon: Pyrococcus furiosus exhibits multiple responses to a suboptimal growth temperature with a key role for membrane-bound glycoproteins
    • Weinberg, M. V., Schut, G. J., Brehm, S., Datta, S., and Adams, M. W. W. (2005). Cold shock of a hyperthermophilic archaeon: Pyrococcus furiosus exhibits multiple responses to a suboptimal growth temperature with a key role for membrane-bound glycoproteins. J. Bacteriol. 187, 336-348. doi: 10.1128/JB.187.1.336-348.2005
    • (2005) J. Bacteriol , vol.187 , pp. 336-348
    • Weinberg, M.V.1    Schut, G.J.2    Brehm, S.3    Datta, S.4    Adams, M.W.W.5
  • 145
    • 0029052056 scopus 로고
    • DNA relatedness of thermus strains, description of Thermus brockianus sp. nov., and proposal to reestablish Thermus thermophilus (Oshima and Imahori)
    • Williams, R. A. D., Smith, K. E., Welch, S. G., Micallef, J., and Sharp, R. J. (1995). DNA relatedness of thermus strains, description of Thermus brockianus sp. nov., and proposal to reestablish Thermus thermophilus (Oshima and Imahori). Int. J. Syst. Bacteriol. 45, 495-499. doi: 10.1099/00207713-45-3-495
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 495-499
    • Williams, R.A.D.1    Smith, K.E.2    Welch, S.G.3    Micallef, J.4    Sharp, R.J.5
  • 146
    • 0023108630 scopus 로고
    • Autotrophic growth of four Sulfolobus strains on tetrathionate and the effect of organic nutrients
    • Wood, A. P., Kelly, D. P., and Norris, P. R. (1987). Autotrophic growth of four Sulfolobus strains on tetrathionate and the effect of organic nutrients. Arch. Microbiol. 146, 382-389. doi: 10.1007/BF00410940
    • (1987) Arch. Microbiol , vol.146 , pp. 382-389
    • Wood, A.P.1    Kelly, D.P.2    Norris, P.R.3
  • 147
    • 0024230837 scopus 로고
    • Selection and characterization of ura5 mutants of Histoplasma capsulatum
    • Worsham, P., and Goldman, W. (1988). Selection and characterization of ura5 mutants of Histoplasma capsulatum. Mol. Gen. Genet. 214, 348-352. doi: 10.1007/BF00337734
    • (1988) Mol. Gen. Genet , vol.214 , pp. 348-352
    • Worsham, P.1    Goldman, W.2
  • 148
    • 0037226536 scopus 로고    scopus 로고
    • Targeted disruption of the alpha-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Worthington, P., Hoang, V., Perez-Pomares, F., and Blum, P. (2003). Targeted disruption of the alpha-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus. J. Bacteriol. 185, 482-488. doi: 10.1128/JB.185.2.482-488.2003
    • (2003) J. Bacteriol , vol.185 , pp. 482-488
    • Worthington, P.1    Hoang, V.2    Perez-Pomares, F.3    Blum, P.4
  • 149
    • 84939138115 scopus 로고    scopus 로고
    • Expression of heterologous cellulases in Thermotoga sp. Strain RQ2
    • Xu, H., Han, D., and Xu, Z. (2015). Expression of heterologous cellulases in Thermotoga sp. Strain RQ2. Biomed Res. Int. 2015:304523. doi: 10.1155/2015/304523
    • (2015) Biomed Res. Int , vol.2015
    • Xu, H.1    Han, D.2    Xu, Z.3
  • 150
    • 67650457345 scopus 로고    scopus 로고
    • Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe "Anaerocellum thermophilum" DSM 6725
    • Yang, S. J., Kataeva, I., Hamilton-Brehm, S. D., Engle, N. L., Tschaplinski, T. J., Doeppke, C., et al. (2009). Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe "Anaerocellum thermophilum" DSM 6725. Appl. Environ. Microbiol. 75, 4762-4769. doi: 10.1128/AEM.00236-09
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 4762-4769
    • Yang, S.J.1    Kataeva, I.2    Hamilton-Brehm, S.D.3    Engle, N.L.4    Tschaplinski, T.J.5    Doeppke, C.6
  • 151
    • 77956685960 scopus 로고    scopus 로고
    • Classification of 'Anaerocellum thermophilum' strain DSM 6725 as Caldicellulosiruptor bescii sp. nov
    • Yang, S. J., Kataeva, I., Wiegel, J., Yin, Y. B., Dam, P., Xu, Y., et al. (2010). Classification of 'Anaerocellum thermophilum' strain DSM 6725 as Caldicellulosiruptor bescii sp. nov. Int. J. Syst. Evol. Bacteriol. 60, 2011-2015. doi: 10.1099/ijs.0.017731-0
    • (2010) Int. J. Syst. Evol. Bacteriol , vol.60 , pp. 2011-2015
    • Yang, S.J.1    Kataeva, I.2    Wiegel, J.3    Yin, Y.B.4    Dam, P.5    Xu, Y.6
  • 152
    • 77956243492 scopus 로고    scopus 로고
    • 'Scale-up of Microbial Fermentation Process'
    • eds R. H. Baltz, J. E. Davies and A. L. Demain (Washington, DC: ASM Press: American Society for Microbiology)
    • Yang, X. (2010). "Scale-up of Microbial Fermentation Process". in Manual Of Industrial Microbiology and Biotechnology, eds R. H. Baltz, J. E. Davies and A. L. Demain (Washington, DC: ASM Press: American Society for Microbiology), 669-675.
    • (2010) Manual Of Industrial Microbiology and Biotechnology , pp. 669-675
    • Yang, X.1
  • 153
    • 42449105241 scopus 로고    scopus 로고
    • Leveraging fermentation heat transfer data to better understand metabolic activity
    • Yang, X., Georgescu, R., Berge, M., and Bhargava, S. (2008). Leveraging fermentation heat transfer data to better understand metabolic activity. BioPharm. Int. 21, 48-52. Available online at: http://www.biopharminternational.com/leveraging-fermentation-heat-transfer-data-better-understand-metabolic-activity
    • (2008) BioPharm. Int , vol.21 , pp. 48-52
    • Yang, X.1    Georgescu, R.2    Berge, M.3    Bhargava, S.4
  • 154
    • 77955853857 scopus 로고    scopus 로고
    • Metabolic engineering to improve ethanol production in Thermoanaerobacter mathranii
    • Yao, S., and Mikkelsen, M. (2010a). Metabolic engineering to improve ethanol production in Thermoanaerobacter mathranii. Appl. Microbiol. Biol. 88, 199-208. doi: 10.1007/s00253-010-2703-3
    • (2010) Appl. Microbiol. Biol , vol.88 , pp. 199-208
    • Yao, S.1    Mikkelsen, M.2
  • 155
    • 77957292723 scopus 로고    scopus 로고
    • Identification and overexpression of a bifunctional aldehyde/alcohol dehydrogenase responsible for ethanol production in Thermoanaerobacter mathranii
    • Yao, S., and Mikkelsen, M. J. (2010b). Identification and overexpression of a bifunctional aldehyde/alcohol dehydrogenase responsible for ethanol production in Thermoanaerobacter mathranii. J. Mol. Microbiol. Biotechnol. 19, 123-133. doi: 10.1159/000321498
    • (2010) J. Mol. Microbiol. Biotechnol , vol.19 , pp. 123-133
    • Yao, S.1    Mikkelsen, M.J.2
  • 156
    • 0035259957 scopus 로고    scopus 로고
    • Liposome-mediated DNA uptake and transient expression in Thermotoga
    • Yu, J. S., Vargas, M., Mityas, C., and Noll, K. M. (2001). Liposome-mediated DNA uptake and transient expression in Thermotoga. Extremophiles 5, 53-60. doi: 10.1007/s007920000173
    • (2001) Extremophiles , vol.5 , pp. 53-60
    • Yu, J.S.1    Vargas, M.2    Mityas, C.3    Noll, K.M.4
  • 157
    • 0026222595 scopus 로고
    • Thermostable enzymes for industrial applications
    • Zamost, B. L., Nielsen, H. K., and Starnes, R. L. (1991). Thermostable enzymes for industrial applications. J. Ind. Microbiol. 8, 71-82. doi: 10.1007/BF01578757
    • (1991) J. Ind. Microbiol , vol.8 , pp. 71-82
    • Zamost, B.L.1    Nielsen, H.K.2    Starnes, R.L.3
  • 158
    • 84861854629 scopus 로고    scopus 로고
    • A broadly applicable gene knockout system for the thermoacidophilic archaeon Sulfolobus islandicus based on simvastatin selection
    • Zhang, C., and Whitaker, R. J. (2012). A broadly applicable gene knockout system for the thermoacidophilic archaeon Sulfolobus islandicus based on simvastatin selection. Microbiology 158, 1513-1522. doi: 10.1099/mic.0.058289-0
    • (2012) Microbiology , vol.158 , pp. 1513-1522
    • Zhang, C.1    Whitaker, R.J.2
  • 159
    • 84884221095 scopus 로고    scopus 로고
    • Augmenting the genetic toolbox for Sulfolobus islandicus with a stringent positive selectable marker for agmatine prototrophy
    • Zhang, C., Cooper, T. E., Krause, D. J., and Whitaker, R. J. (2013). Augmenting the genetic toolbox for Sulfolobus islandicus with a stringent positive selectable marker for agmatine prototrophy. Appl. Environ. Microbiol. 79, 5539-5549. doi: 10.1128/AEM.01608-13
    • (2013) Appl. Environ. Microbiol , vol.79 , pp. 5539-5549
    • Zhang, C.1    Cooper, T.E.2    Krause, D.J.3    Whitaker, R.J.4
  • 160
    • 84862908235 scopus 로고    scopus 로고
    • Development of a simvastatin selection marker for a hyperthermophilic acidophile, Sulfolobus islandicus
    • Zheng, T., Huang, Q., Zhang, C., Ni, J., She, Q., and Shen, Y. (2012). Development of a simvastatin selection marker for a hyperthermophilic acidophile, Sulfolobus islandicus. Appl. Environ. Microbiol. 78, 568-574. doi: 10.1128/AEM.06095-11
    • (2012) Appl. Environ. Microbiol , vol.78 , pp. 568-574
    • Zheng, T.1    Huang, Q.2    Zhang, C.3    Ni, J.4    She, Q.5    Shen, Y.6
  • 161
    • 84883792795 scopus 로고    scopus 로고
    • Characterization of apparent sulfur oxidation activity of thermophilic archaea in bioleaching of chalcopyrite
    • Zhu, W., Xia, J.-L., Peng, A.-A., Nie, Z.-Y., and Qiu, G.-Z. (2013). Characterization of apparent sulfur oxidation activity of thermophilic archaea in bioleaching of chalcopyrite. Trans. Nonferr. Metals Soc. 23, 2383-2388. doi: 10.1016/S1003-6326(13)62745-4
    • (2013) Trans. Nonferr. Metals Soc , vol.23 , pp. 2383-2388
    • Zhu, W.1    Xia, J.-L.2    Peng, A.-A.3    Nie, Z.-Y.4    Qiu, G.-Z.5
  • 162
    • 0028268367 scopus 로고
    • Screening for Sulfolobales, their plasmids and their viruses in icelandic solfataras
    • Zillig, W., Kletzin, A., Schleper, C., Holz, I., Janekovic, D., Hain, J., et al. (1993). Screening for Sulfolobales, their plasmids and their viruses in icelandic solfataras. Syst. Appl. Microbiol. 16, 609-628. doi: 10.1016/S0723-2020(11)80333-4
    • (1993) Syst. Appl. Microbiol , vol.16 , pp. 609-628
    • Zillig, W.1    Kletzin, A.2    Schleper, C.3    Holz, I.4    Janekovic, D.5    Hain, J.6
  • 163
    • 0018928663 scopus 로고
    • The Sulfolobus-"Caldariella". group: taxonomy on the basis of the structure of DNA-dependent RNA polymerases
    • Zillig, W., Stetter, K. O., Wunderl, S., Schulz, W., Priess, H., and Scholz, I. (1980). The Sulfolobus-"Caldariella". group: taxonomy on the basis of the structure of DNA-dependent RNA polymerases. Arch. Microbiol. 125, 259-269. doi: 10.1007/BF00446886
    • (1980) Arch. Microbiol , vol.125 , pp. 259-269
    • Zillig, W.1    Stetter, K.O.2    Wunderl, S.3    Schulz, W.4    Priess, H.5    Scholz, I.6
  • 164
    • 84895904422 scopus 로고    scopus 로고
    • Geographic divergence of "Sulfolobus islandicus". strains assessed by genomic analyses including electronic DNA hybridization confirms they are geovars
    • Zuo, G., Hao, B., and Staley, J. T. (2014). Geographic divergence of "Sulfolobus islandicus". strains assessed by genomic analyses including electronic DNA hybridization confirms they are geovars. Anton Leeuw 105, 431-435. doi: 10.1007/s10482-013-0081-4
    • (2014) Anton Leeuw , vol.105 , pp. 431-435
    • Zuo, G.1    Hao, B.2    Staley, J.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.