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Volumn 10, Issue 5, 2013, Pages 828-840

Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis

Author keywords

Archaea; Cas; CRISPR; DNA; Hyperthermophile; Immune; Interference; RNA; Silencing; Thermococcus

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; ARCHAEAL RNA;

EID: 84879028690     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.24084     Document Type: Article
Times cited : (33)

References (83)
  • 1
    • 77957935381 scopus 로고    scopus 로고
    • CRISPR/Cas system and its role in phage-bacteria interactions
    • PMID:20528693
    • Deveau H, Garneau JE, Moineau S. CRISPR/Cas system and its role in phage-bacteria interactions. Annu Rev Microbiol 2010; 64:475-93; PMID:20528693; http:// dx.doi.org/10.1146/annurev.micro.112408.134123.
    • (2010) Annu Rev Microbiol , vol.64 , pp. 475-493
    • Deveau, H.1    Garneau, J.E.2    Moineau, S.3
  • 3
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • PMID:20125085
    • Marraffini LA, Sontheimer EJ. CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat Rev Genet 2010; 11:181-90; PMID:20125085; http://dx.doi.org/10.1038/nrg2749.
    • (2010) Nat Rev Genet , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 4
    • 79959319829 scopus 로고    scopus 로고
    • CRISPR-based adaptive immune systems
    • PMID:21531607
    • Terns MP, Terns RM. CRISPR-based adaptive immune systems. Curr Opin Microbiol 2011; 14:321-7; PMID:21531607; http://dx.doi.org/10.1016/j.mib.2011. 03.005.
    • (2011) Curr Opin Microbiol , vol.14 , pp. 321-327
    • Terns, M.P.1    Terns, R.M.2
  • 5
    • 84870718176 scopus 로고    scopus 로고
    • Memory of viral infections by CRISPR-Cas adaptive immune systems: Acquisition of new information
    • PMID:23123013
    • Fineran PC, Charpentier E. Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information. Virology 2012; 434:202-9; PMID:23123013; http://dx.doi.org/10.1016/j.virol.2012.10.003.
    • (2012) Virology , vol.434 , pp. 202-209
    • Fineran, P.C.1    Charpentier, E.2
  • 6
    • 80755153697 scopus 로고    scopus 로고
    • Archaeal CRISPR-based immune systems: Exchangeable functional modules
    • PMID:21945420
    • Garrett RA, Vestergaard G, Shah SA. Archaeal CRISPR-based immune systems: exchangeable functional modules. Trends Microbiol 2011; 19:549-56; PMID:21945420; http://dx.doi.org/10.1016/j.tim.2011.08.002.
    • (2011) Trends Microbiol , vol.19 , pp. 549-556
    • Garrett, R.A.1    Vestergaard, G.2    Shah, S.A.3
  • 7
    • 84870180587 scopus 로고    scopus 로고
    • The CRISPRs, they are a-changin': How prokaryotes generate adaptive immunity
    • PMID:23145983
    • Westra ER, Swarts DC, Staals RH, Jore MM, Brouns SJ, van der Oost J. The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. Annu Rev Genet 2012; 46:311-39; PMID:23145983; http://dx.doi.org/10.1146/annurev- genet-110711-155447.
    • (2012) Annu Rev Genet , vol.46 , pp. 311-339
    • Westra, E.R.1    Swarts, D.C.2    Staals, R.H.3    Jore, M.M.4    Brouns, S.J.5    Van Der Oost, J.6
  • 8
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • PMID:22337052
    • Wiedenheft B, Sternberg SH, Doudna JA. RNA-guided genetic silencing systems in bacteria and archaea. Nature 2012; 482:331-8; PMID:22337052; http://dx.doi.org/10.1038/nature10886.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 9
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • PMID:17379808
    • Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007; 315:1709-12; PMID:17379808; http://dx.doi.org/10.1126/science.1138140.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1    Fremaux, C.2    Deveau, H.3    Richards, M.4    Boyaval, P.5    Moineau, S.6
  • 10
    • 78149261827 scopus 로고    scopus 로고
    • The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
    • PMID:21048762
    • Garneau JE, Dupuis ME, Villion M, Romero DA, Barrangou R, Boyaval P, et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 2010; 468:67-71; PMID:21048762; http://dx.doi.org/10.1038/ nature09523.
    • (2010) Nature , vol.468 , pp. 67-71
    • Garneau, J.E.1    Dupuis, M.E.2    Villion, M.3    Romero, D.A.4    Barrangou, R.5    Boyaval, P.6
  • 11
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
    • PMID:22781758
    • Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, Semenova E. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat Commun 2012; 3:945; PMID:22781758; http://dx.doi.org/10. 1038/ncomms1937.
    • (2012) Nat Commun , vol.3 , pp. 945
    • Datsenko, K.A.1    Pougach, K.2    Tikhonov, A.3    Wanner, B.L.4    Severinov, K.5    Semenova, E.6
  • 12
    • 84860433123 scopus 로고    scopus 로고
    • CRISPR interference directs strand specific spacer acquisition
    • PMID:22558257
    • Swarts DC, Mosterd C, van Passel MW, Brouns SJ. CRISPR interference directs strand specific spacer acquisition. PLoS One 2012; 7:e35888; PMID:22558257; http://dx.doi.org/10.1371/journal.pone.0035888.
    • (2012) PLoS One , vol.7
    • Swarts, D.C.1    Mosterd, C.2    Van Passel, M.W.3    Brouns, S.J.4
  • 13
    • 84861639567 scopus 로고    scopus 로고
    • Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
    • PMID:22402487
    • Yosef I, Goren MG, Qimron U. Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 2012; 40:5569-76; PMID:22402487; http://dx.doi.org/10.1093/nar/gks216.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5569-5576
    • Yosef, I.1    Goren, M.G.2    Qimron, U.3
  • 14
    • 84866023604 scopus 로고    scopus 로고
    • Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms
    • PMID:22834906
    • Erdmann S, Garrett RA. Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol 2012; 85:1044-56; PMID:22834906; http://dx.doi.org/10.1111/j.1365- 2958.2012.08171.x.
    • (2012) Mol Microbiol , vol.85 , pp. 1044-1056
    • Erdmann, S.1    Garrett, R.A.2
  • 16
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • PMID:18703739
    • Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008; 321:960-4; PMID:18703739; http://dx.doi.org/10.1126/science.1159689.
    • (2008) Science , vol.321 , pp. 960-964
    • Brouns, S.J.1    Jore, M.M.2    Lundgren, M.3    Westra, E.R.4    Slijkhuis, R.J.5    Snijders, A.P.6
  • 17
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • PMID:19141480
    • Carte J, Wang R, Li H, Terns RM, Terns MP. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 2008; 22:3489-96; PMID:19141480; http://dx.doi.org/10.1101/gad.1742908.
    • (2008) Genes Dev , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 18
    • 78149355930 scopus 로고    scopus 로고
    • Binding and cleavage of CRISPR RNA by Cas6
    • PMID:20884784
    • Carte J, Pfister NT, Compton MM, Terns RM, Terns MP. Binding and cleavage of CRISPR RNA by Cas6. RNA 2010; 16:2181-8; PMID:20884784; http://dx.doi.org/ 10.1261/rna.2230110.
    • (2010) RNA , vol.16 , pp. 2181-2188
    • Carte, J.1    Pfister, N.T.2    Compton, M.M.3    Terns, R.M.4    Terns, M.P.5
  • 19
    • 77956498326 scopus 로고    scopus 로고
    • Sequence- and structure-specific RNA processing by a CRISPR endonuclease
    • PMID:20829488
    • Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA. Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 2010; 329:1355-8; PMID:20829488; http://dx.doi.org/10.1126/science.1192272.
    • (2010) Science , vol.329 , pp. 1355-1358
    • Haurwitz, R.E.1    Jinek, M.2    Wiedenheft, B.3    Zhou, K.4    Doudna, J.A.5
  • 20
    • 84855475577 scopus 로고    scopus 로고
    • Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site
    • PMID:22160698
    • Hatoum-Aslan A, Maniv I, Marraffini LA. Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site. Proc Natl Acad Sci USA 2011; 108:21218-22; PMID:22160698; http://dx.doi.org/10.1073/pnas.1112832108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 21218-21222
    • Hatoum-Aslan, A.1    Maniv, I.2    Marraffini, L.A.3
  • 21
    • 84867678349 scopus 로고    scopus 로고
    • Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases
    • PMID:23006625
    • Garside EL, Schellenberg MJ, Gesner EM, Bonanno JB, Sauder JM, Burley SK, et al. Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases. RNA 2012; 18:2020-8; PMID:23006625; http://dx.doi.org/10. 1261/rna.033100.112.
    • (2012) RNA , vol.18 , pp. 2020-2028
    • Garside, E.L.1    Schellenberg, M.J.2    Gesner, E.M.3    Bonanno, J.B.4    Sauder, J.M.5    Burley, S.K.6
  • 22
    • 84856792673 scopus 로고    scopus 로고
    • Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs
    • PMID:22227116
    • Hale CR, Majumdar S, Elmore J, Pfister N, Compton M, Olson S, et al. Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol Cell 2012; 45:292-302; PMID:22227116; http://dx.doi.org/10.1016/j.molcel.2011.10.023.
    • (2012) Mol Cell , vol.45 , pp. 292-302
    • Hale, C.R.1    Majumdar, S.2    Elmore, J.3    Pfister, N.4    Compton, M.5    Olson, S.6
  • 23
    • 79953250082 scopus 로고    scopus 로고
    • CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    • PMID:21455174
    • Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 2011; 471:602-7; PMID:21455174; http://dx.doi.org/10.1038/nature09886.
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1    Chylinski, K.2    Sharma, C.M.3    Gonzales, K.4    Chao, Y.5    Pirzada, Z.A.6
  • 24
    • 57049149666 scopus 로고    scopus 로고
    • Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus
    • PMID:18971321
    • Hale C, Kleppe K, Terns RM, Terns MP. Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus. RNA 2008; 14:2572-9; PMID:18971321; http://dx.doi.org/10. 1261/rna.1246808.
    • (2008) RNA , vol.14 , pp. 2572-2579
    • Hale, C.1    Kleppe, K.2    Terns, R.M.3    Terns, M.P.4
  • 25
    • 70449753811 scopus 로고    scopus 로고
    • RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
    • PMID:19945378
    • Hale CR, Zhao P, Olson S, Duff MO, Graveley BR, Wells L, et al. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 2009; 139:945-56; PMID:19945378; http://dx.doi.org/10.1016/j.cell.2009.07.040.
    • (2009) Cell , vol.139 , pp. 945-956
    • Hale, C.R.1    Zhao, P.2    Olson, S.3    Duff, M.O.4    Graveley, B.R.5    Wells, L.6
  • 26
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • PMID:22745249
    • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012; 337:816-21; PMID:22745249; http://dx.doi.org/10.1126/science. 1225829.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 27
    • 84866859751 scopus 로고    scopus 로고
    • Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • PMID:22949671
    • Gasiunas G, Barrangou R, Horvath P, Siksnys V. Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci USA 2012; 109:E2579-86; PMID:22949671; http://dx.doi.org/10.1073/pnas.1208507109.
    • (2012) Proc Natl Acad Sci USA , vol.109
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4
  • 29
    • 79958754524 scopus 로고    scopus 로고
    • Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
    • PMID:21507944
    • Lintner NG, Kerou M, Brumfield SK, Graham S, Liu H, Naismith JH, et al. Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J Biol Chem 2011; 286:21643-56; PMID:21507944; http://dx.doi.org/10.1074/jbc.M111.238485.
    • (2011) J Biol Chem , vol.286 , pp. 21643-21656
    • Lintner, N.G.1    Kerou, M.2    Brumfield, S.K.3    Graham, S.4    Liu, H.5    Naismith, J.H.6
  • 30
    • 80053169737 scopus 로고    scopus 로고
    • Structures of the RNA-guided surveillance complex from a bacterial immune system
    • PMID:21938068
    • Wiedenheft B, Lander GC, Zhou K, Jore MM, Brouns SJ, van der Oost J, et al. Structures of the RNA-guided surveillance complex from a bacterial immune system. Nature 2011; 477:486-9; PMID:21938068; http://dx.doi.org/10.1038/ nature10402.
    • (2011) Nature , vol.477 , pp. 486-489
    • Wiedenheft, B.1    Lander, G.C.2    Zhou, K.3    Jore, M.M.4    Brouns, S.J.5    Van Der Oost, J.6
  • 31
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • PMID:16292354
    • Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 2005; 1:e60; PMID:16292354; http://dx.doi.org/10.1371/journal.pcbi.0010060.
    • (2005) PLoS Comput Biol , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 32
    • 80755187812 scopus 로고    scopus 로고
    • CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation
    • PMID:22060043
    • Bhaya D, Davison M, Barrangou R. CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet 2011; 45:273-97; PMID:22060043; http://dx.doi.org/10.1146/annurev-genet- 110410-132430.
    • (2011) Annu Rev Genet , vol.45 , pp. 273-297
    • Bhaya, D.1    Davison, M.2    Barrangou, R.3
  • 33
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • PMID:19095942
    • Marraffini LA, Sontheimer EJ. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 2008; 322:1843-5; PMID:19095942; http://dx.doi.org/10.1126/science.1165771.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 34
    • 84861996069 scopus 로고    scopus 로고
    • CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
    • PMID:22521689
    • Westra ER, van Erp PB, Künne T, Wong SP, Staals RH, Seegers CL, et al. CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol Cell 2012; 46:595-605; PMID:22521689; http://dx.doi.org/10.1016/j.molcel.2012.03.018.
    • (2012) Mol Cell , vol.46 , pp. 595-605
    • Westra, E.R.1    Van Erp, P.B.2    Künne, T.3    Wong, S.P.4    Staals, R.H.5    Seegers, C.L.6
  • 35
    • 84866951828 scopus 로고    scopus 로고
    • An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA
    • PMID:22767603
    • Fischer S, Maier LK, Stoll B, Brendel J, Fischer E, Pfeiffer F, et al. An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA. J Biol Chem 2012; 287:33351-63; PMID:22767603; http://dx.doi.org/10.1074/jbc.M112.377002.
    • (2012) J Biol Chem , vol.287 , pp. 33351-33363
    • Fischer, S.1    Maier, L.K.2    Stoll, B.3    Brendel, J.4    Fischer, E.5    Pfeiffer, F.6
  • 36
    • 78650244167 scopus 로고    scopus 로고
    • Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
    • PMID:21166892
    • Gudbergsdottir S, Deng L, Chen Z, Jensen JV, Jensen LR, She Q, et al. Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol 2011; 79:35-49; PMID:21166892; http://dx.doi.org/10.1111/j.1365-2958. 2010.07452.x.
    • (2011) Mol Microbiol , vol.79 , pp. 35-49
    • Gudbergsdottir, S.1    Deng, L.2    Chen, Z.3    Jensen, J.V.4    Jensen, L.R.5    She, Q.6
  • 37
    • 79953887840 scopus 로고    scopus 로고
    • In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon
    • PMID:21385233
    • Manica A, Zebec Z, Teichmann D, Schleper C. In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon. Mol Microbiol 2011; 80:481-91; PMID:21385233; http://dx.doi.org/10.1111/j.1365-2958.2011. 07586.x.
    • (2011) Mol Microbiol , vol.80 , pp. 481-491
    • Manica, A.1    Zebec, Z.2    Teichmann, D.3    Schleper, C.4
  • 38
    • 84856778250 scopus 로고    scopus 로고
    • Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity
    • PMID:22227115
    • Zhang J, Rouillon C, Kerou M, Reeks J, Brugger K, Graham S, et al. Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity. Mol Cell 2012; 45:303-13; PMID:22227115; http://dx.doi.org/10.1016/j. molcel.2011.12.013.
    • (2012) Mol Cell , vol.45 , pp. 303-313
    • Zhang, J.1    Rouillon, C.2    Kerou, M.3    Reeks, J.4    Brugger, K.5    Graham, S.6
  • 39
    • 79960029056 scopus 로고    scopus 로고
    • RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
    • PMID:21536913
    • Wiedenheft B, van Duijn E, Bultema JB, Waghmare SP, Zhou K, Barendregt A, et al. RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions. Proc Natl Acad Sci USA 2011; 108:10092-7; PMID:21536913; http://dx.doi.org/10.1073/pnas.1102716108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 10092-10097
    • Wiedenheft, B.1    Van Duijn, E.2    Bultema, J.B.3    Waghmare, S.P.4    Zhou, K.5    Barendregt, A.6
  • 40
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • PMID:11952905
    • Jansen R, Embden JD, Gaastra W, Schouls LM. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 2002; 43:1565-75; PMID:11952905; http://dx.doi.org/10.1046/j.1365-2958.2002.02839.x.
    • (2002) Mol Microbiol , vol.43 , pp. 1565-1575
    • Jansen, R.1    Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 41
    • 62949197925 scopus 로고    scopus 로고
    • CRISPR families of the crenarchaeal genus Sulfolobus: Bidirectional transcription and dynamic properties
    • PMID:19239620
    • Lillestøl RK, Shah SA, Brügger K, Redder P, Phan H, Christiansen J, et al. CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol 2009; 72:259-72; PMID:19239620; http://dx.doi.org/10.1111/j.1365-2958.2009.06641.x.
    • (2009) Mol Microbiol , vol.72 , pp. 259-272
    • Lillestøl, R.K.1    Shah, S.A.2    Brügger, K.3    Redder, P.4    Phan, H.5    Christiansen, J.6
  • 42
    • 77949398275 scopus 로고    scopus 로고
    • Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS
    • PMID:20132443
    • Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R. Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 2010; 75:1495-512; PMID:20132443; http://dx.doi.org/10.1111/ j.1365-2958.2010.07073.x.
    • (2010) Mol Microbiol , vol.75 , pp. 1495-1512
    • Pul, U.1    Wurm, R.2    Arslan, Z.3    Geissen, R.4    Hofmann, N.5    Wagner, R.6
  • 43
    • 84867317299 scopus 로고    scopus 로고
    • Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum
    • PMID:22811677
    • Bernick DL, Cox CL, Dennis PP, Lowe TM. Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum. Front Microbiol 2012; 3:251; PMID:22811677; http://dx.doi.org/10.3389/fmicb.2012. 00251.
    • (2012) Front Microbiol , vol.3 , pp. 251
    • Bernick, D.L.1    Cox, C.L.2    Dennis, P.P.3    Lowe, T.M.4
  • 44
    • 84861357119 scopus 로고    scopus 로고
    • Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax
    • PMID:22408157
    • Plagens A, Tjaden B, Hagemann A, Randau L, Hensel R. Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax. J Bacteriol 2012; 194:2491-500; PMID:22408157; http://dx.doi.org/10.1128/JB.00206-12.
    • (2012) J Bacteriol , vol.194 , pp. 2491-2500
    • Plagens, A.1    Tjaden, B.2    Hagemann, A.3    Randau, L.4    Hensel, R.5
  • 45
    • 77956628107 scopus 로고    scopus 로고
    • Transcription, processing and function of CRISPR cassettes in Escherichia coli
    • PMID:20624226
    • Pougach K, Semenova E, Bogdanova E, Datsenko KA, Djordjevic M, Wanner BL, et al. Transcription, processing and function of CRISPR cassettes in Escherichia coli. Mol Microbiol 2010; 77:1367-79; PMID:20624226; http://dx.doi.org/10.1111/j.1365-2958.2010.07265.x.
    • (2010) Mol Microbiol , vol.77 , pp. 1367-1379
    • Pougach, K.1    Semenova, E.2    Bogdanova, E.3    Datsenko, K.A.4    Djordjevic, M.5    Wanner, B.L.6
  • 46
    • 79958848350 scopus 로고    scopus 로고
    • Recognition and maturation of effector RNAs in a CRISPR interference pathway
    • PMID:21572444
    • Gesner EM, Schellenberg MJ, Garside EL, George MM, Macmillan AM. Recognition and maturation of effector RNAs in a CRISPR interference pathway. Nat Struct Mol Biol 2011; 18:688-92; PMID:21572444; http://dx.doi.org/10.1038/ nsmb.2042.
    • (2011) Nat Struct Mol Biol , vol.18 , pp. 688-692
    • Gesner, E.M.1    Schellenberg, M.J.2    Garside, E.L.3    George, M.M.4    Macmillan, A.M.5
  • 47
    • 84868111481 scopus 로고    scopus 로고
    • Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
    • PMID:22879377
    • Richter H, Zoephel J, Schermuly J, Maticzka D, Backofen R, Randau L. Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis. Nucleic Acids Res 2012; 40:9887-96; PMID:22879377; http://dx.doi.org/10.1093/nar/gks737.
    • (2012) Nucleic Acids Res , vol.40 , pp. 9887-9896
    • Richter, H.1    Zoephel, J.2    Schermuly, J.3    Maticzka, D.4    Backofen, R.5    Randau, L.6
  • 48
    • 84865704094 scopus 로고    scopus 로고
    • Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system
    • PMID:22841292
    • Nam KH, Haitjema C, Liu X, Ding F, Wang H, DeLisa MP, et al. Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system. Structure 2012; 20:1574-84; PMID:22841292; http://dx.doi.org/10.1016/j.str.2012.06.016.
    • (2012) Structure , vol.20 , pp. 1574-1584
    • Nam, K.H.1    Haitjema, C.2    Liu, X.3    Ding, F.4    Wang, H.5    DeLisa, M.P.6
  • 49
    • 84868143545 scopus 로고    scopus 로고
    • The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages
    • PMID:22885297
    • Cady KC, Bondy-Denomy J, Heussler GE, Davidson AR, O'Toole GA. The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J Bacteriol 2012; 194:5728-38; PMID:22885297; http://dx.doi.org/10.1128/JB.01184-12.
    • (2012) J Bacteriol , vol.194 , pp. 5728-5738
    • Cady, K.C.1    Bondy-Denomy, J.2    Heussler, G.E.3    Davidson, A.R.4    O'Toole, G.A.5
  • 50
    • 38949123143 scopus 로고    scopus 로고
    • Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
    • PMID:18065545
    • Deveau H, Barrangou R, Garneau JE, Labonté J, Fremaux C, Boyaval P, et al. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 2008; 190:1390-400; PMID:18065545; http://dx.doi.org/10.1128/JB.01412-07.
    • (2008) J Bacteriol , vol.190 , pp. 1390-1400
    • Deveau, H.1    Barrangou, R.2    Garneau, J.E.3    Labonté, J.4    Fremaux, C.5    Boyaval, P.6
  • 51
    • 75749118174 scopus 로고    scopus 로고
    • Self versus non-self discrimination during CRISPR RNA-directed immunity
    • PMID:20072129
    • Marraffini LA, Sontheimer EJ. Self versus non-self discrimination during CRISPR RNA-directed immunity. Nature 2010; 463:568-71; PMID:20072129; http://dx.doi.org/10.1038/nature08703.
    • (2010) Nature , vol.463 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 52
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • PMID:19246744
    • Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 2009; 155:733-40; PMID:19246744; http://dx.doi.org/10.1099/mic.0.023960-0.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Almendros, C.4
  • 53
    • 0027946790 scopus 로고
    • Purification and characterization of a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp
    • PMID:7811092
    • Morikawa M, Izawa Y, Rashid N, Hoaki T, Imanaka T. Purification and characterization of a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp. Appl Environ Microbiol 1994; 60:4559-66; PMID:7811092.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 4559-4566
    • Morikawa, M.1    Izawa, Y.2    Rashid, N.3    Hoaki, T.4    Imanaka, T.5
  • 54
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • PMID:17521438
    • Grissa I, Vergnaud G, Pourcel C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 2007; 8:172; PMID:17521438; http://dx.doi.org/10.1186/1471-2105- 8-172.
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 55
    • 75849154794 scopus 로고    scopus 로고
    • CRISPI: A CRISPR interactive database
    • PMID:19846435
    • Rousseau C, Gonnet M, Le Romancer M, Nicolas J. CRISPI: a CRISPR interactive database. Bioinformatics 2009; 25:3317-8; PMID:19846435; http://dx.doi.org/10.1093/bioinformatics/btp586.
    • (2009) Bioinformatics , vol.25 , pp. 3317-3318
    • Rousseau, C.1    Gonnet, M.2    Le Romancer, M.3    Nicolas, J.4
  • 56
    • 35748974534 scopus 로고    scopus 로고
    • Evolutionary conservation of sequence and secondary structures in CRISPR repeats
    • PMID:17442114
    • Kunin V, Sorek R, Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 2007; 8:R61; PMID:17442114; http://dx.doi.org/10.1186/gb-2007-8-4-r61.
    • (2007) Genome Biol , vol.8
    • Kunin, V.1    Sorek, R.2    Hugenholtz, P.3
  • 57
    • 79551694059 scopus 로고    scopus 로고
    • Interaction of the Cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
    • PMID:21300293
    • Wang R, Preamplume G, Terns MP, Terns RM, Li H. Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure 2011; 19:257-64; PMID:21300293; http://dx.doi.org/10.1016/j.str.2010.11.014.
    • (2011) Structure , vol.19 , pp. 257-264
    • Wang, R.1    Preamplume, G.2    Terns, M.P.3    Terns, R.M.4    Li, H.5
  • 58
    • 0033598826 scopus 로고    scopus 로고
    • The structural basis for the oriented assembly of a TBP/TFB/promoter complex
    • PMID:10570130
    • Littlefield O, Korkhin Y, Sigler PB. The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc Natl Acad Sci USA 1999; 96:13668-73; PMID:10570130; http://dx.doi.org/10.1073/pnas.96.24.13668.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 13668-13673
    • Littlefield, O.1    Korkhin, Y.2    Sigler, P.B.3
  • 59
    • 84864815932 scopus 로고    scopus 로고
    • RNA processing in the minimal organism Nanoarchaeum equitans
    • PMID:22809431
    • Randau L. RNA processing in the minimal organism Nanoarchaeum equitans. Genome Biol 2012; 13:R63; PMID:22809431; http://dx.doi.org/10.1186/gb-2012-13-7- r63.
    • (2012) Genome Biol , vol.13
    • Randau, L.1
  • 60
    • 22144443201 scopus 로고    scopus 로고
    • Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis
    • PMID:16000802
    • Sato T, Fukui T, Atomi H, Imanaka T. Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis. Appl Environ Microbiol 2005; 71:3889-99; PMID:16000802; http://dx.doi.org/10.1128/AEM.71.7.3889-3899. 2005.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3889-3899
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 61
    • 44249097297 scopus 로고    scopus 로고
    • Shuttle vector expression in Thermococcus kodakaraensis: Contributions of cis elements to protein synthesis in a hyperthermophilic archaeon
    • PMID:18378640
    • Santangelo TJ, Cubonová L, Reeve JN. Shuttle vector expression in Thermococcus kodakaraensis: contributions of cis elements to protein synthesis in a hyperthermophilic archaeon. Appl Environ Microbiol 2008; 74:3099-104; PMID:18378640; http://dx.doi.org/10.1128/AEM.00305-08.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3099-3104
    • Santangelo, T.J.1    Cubonová, L.2    Reeve, J.N.3
  • 62
    • 84869997748 scopus 로고    scopus 로고
    • Target motifs affecting natural immunity by a constitutive CRISPR-Cas system in Escherichia coli
    • PMID:23189210
    • Almendros C, Guzmán NM, Díez-Villaseñor C, García-Martínez J, Mojica FJ. Target motifs affecting natural immunity by a constitutive CRISPR-Cas system in Escherichia coli. PLoS One 2012; 7:e50797; PMID:23189210; http://dx.doi.org/10.1371/journal.pone.0050797.
    • (2012) PLoS One , vol.7
    • Almendros, C.1    Guzmán, N.M.2    Díez-Villaseñor, C.3    García-Martínez, J.4    Mojica, F.J.5
  • 63
    • 79959963663 scopus 로고    scopus 로고
    • Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
    • PMID:21646539
    • Semenova E, Jore MM, Datsenko KA, Semenova A, Westra ER, Wanner B, et al. Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc Natl Acad Sci USA 2011; 108:10098-103; PMID:21646539; http://dx.doi.org/10.1073/pnas.1104144108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 10098-10103
    • Semenova, E.1    Jore, M.M.2    Datsenko, K.A.3    Semenova, A.4    Westra, E.R.5    Wanner, B.6
  • 64
    • 67149084593 scopus 로고    scopus 로고
    • Analysis of CRISPR system function in plant pathogen Xanthomonas oryzae
    • PMID:19459963
    • Semenova E, Nagornykh M, Pyatnitskiy M, Artamonova II, Severinov K. Analysis of CRISPR system function in plant pathogen Xanthomonas oryzae. FEMS Microbiol Lett 2009; 296:110-6; PMID:19459963; http://dx.doi.org/10.1111/j.1574- 6968.2009.01626.x.
    • (2009) FEMS Microbiol Lett , vol.296 , pp. 110-116
    • Semenova, E.1    Nagornykh, M.2    Pyatnitskiy, M.3    Artamonova, I.I.4    Severinov, K.5
  • 65
    • 0035929579 scopus 로고    scopus 로고
    • Different cleavage specificities of the dual catalytic domains in chitinase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1
    • PMID:11468293
    • Tanaka T, Fukui T, Imanaka T. Different cleavage specificities of the dual catalytic domains in chitinase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Biol Chem 2001; 276:35629-35; PMID:11468293; http://dx.doi.org/10.1074/jbc.M105919200.
    • (2001) J Biol Chem , vol.276 , pp. 35629-35635
    • Tanaka, T.1    Fukui, T.2    Imanaka, T.3
  • 66
    • 84859716681 scopus 로고    scopus 로고
    • Identification and characterization of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus
    • PMID:22514725
    • Xu N, Li Y, Zhao YT, Guo L, Fang YY, Zhao JH, et al. Identification and characterization of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. PLoS One 2012; 7:e35306; PMID:22514725; http://dx.doi.org/10.1371/ journal.pone.0035306.
    • (2012) PLoS One , vol.7
    • Xu, N.1    Li, Y.2    Zhao, Y.T.3    Guo, L.4    Fang, Y.Y.5    Zhao, J.H.6
  • 67
    • 79956084965 scopus 로고    scopus 로고
    • Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum
    • PMID:21519197
    • Przybilski R, Richter C, Gristwood T, Clulow JS, Vercoe RB, Fineran PC. Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum. RNA Biol 2011; 8:517-28; PMID:21519197; http://dx.doi.org/10.4161/rna.8.3.15190.
    • (2011) RNA Biol , vol.8 , pp. 517-528
    • Przybilski, R.1    Richter, C.2    Gristwood, T.3    Clulow, J.S.4    Vercoe, R.B.5    Fineran, P.C.6
  • 68
    • 79953779608 scopus 로고    scopus 로고
    • Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
    • PMID:21343909
    • Sinkunas T, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V. Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J 2011; 30:1335-42; PMID:21343909; http://dx.doi.org/10.1038/emboj.2011.41.
    • (2011) EMBO J , vol.30 , pp. 1335-1342
    • Sinkunas, T.1    Gasiunas, G.2    Fremaux, C.3    Barrangou, R.4    Horvath, P.5    Siksnys, V.6
  • 69
    • 81255160844 scopus 로고    scopus 로고
    • Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference
    • PMID:22009198
    • Beloglazova N, Petit P, Flick R, Brown G, Savchenko A, Yakunin AF. Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference. EMBO J 2011; 30:4616-27; PMID:22009198; http://dx.doi.org/10.1038/emboj.2011.377.
    • (2011) EMBO J , vol.30 , pp. 4616-4627
    • Beloglazova, N.1    Petit, P.2    Flick, R.3    Brown, G.4    Savchenko, A.5    Yakunin, A.F.6
  • 70
    • 80052400382 scopus 로고    scopus 로고
    • Structural and biochemical analysis of nuclease domain of clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein 3 (Cas3)
    • PMID:21775431
    • Mulepati S, Bailey S. Structural and biochemical analysis of nuclease domain of clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein 3 (Cas3). J Biol Chem 2011; 286:31896-903; PMID:21775431; http://dx.doi.org/10.1074/jbc.M111.270017.
    • (2011) J Biol Chem , vol.286 , pp. 31896-31903
    • Mulepati, S.1    Bailey, S.2
  • 71
    • 79251598240 scopus 로고    scopus 로고
    • The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system
    • PMID:21093452
    • Lintner NG, Frankel KA, Tsutakawa SE, Alsbury DL, Copié V, Young MJ, et al. The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system. J Mol Biol 2011; 405:939-55; PMID:21093452; http://dx.doi.org/10.1016/j.jmb.2010.11.019.
    • (2011) J Mol Biol , vol.405 , pp. 939-955
    • Lintner, N.G.1    Frankel, K.A.2    Tsutakawa, S.E.3    Alsbury, D.L.4    Copié, V.5    Young, M.J.6
  • 72
    • 84861990812 scopus 로고    scopus 로고
    • Mechanism of foreign DNA selection in a bacterial adaptive immune system
    • PMID:22521690
    • Sashital DG, Wiedenheft B, Doudna JA. Mechanism of foreign DNA selection in a bacterial adaptive immune system. Mol Cell 2012; 46:606-15; PMID:22521690; http://dx.doi.org/10.1016/j.molcel.2012.03.020.
    • (2012) Mol Cell , vol.46 , pp. 606-615
    • Sashital, D.G.1    Wiedenheft, B.2    Doudna, J.A.3
  • 73
    • 84863329741 scopus 로고    scopus 로고
    • Crystal structure of the largest subunit of a bacterial RNA-guided immune complex and its role in DNA target binding
    • PMID:22621933
    • Mulepati S, Orr A, Bailey S. Crystal structure of the largest subunit of a bacterial RNA-guided immune complex and its role in DNA target binding. J Biol Chem 2012; 287:22445-9; PMID:22621933; http://dx.doi.org/10.1074/jbc.C112. 379503.
    • (2012) J Biol Chem , vol.287 , pp. 22445-22449
    • Mulepati, S.1    Orr, A.2    Bailey, S.3
  • 74
    • 84868125172 scopus 로고    scopus 로고
    • Cascade-mediated binding and bending of negatively supercoiled DNA
    • PMID:22954644
    • Westra ER, Nilges B, van Erp PB, van der Oost J, Dame RT, Brouns SJ. Cascade-mediated binding and bending of negatively supercoiled DNA. RNA Biol 2012; 9:1134-8; PMID:22954644; http://dx.doi.org/10.4161/rna.21410.
    • (2012) RNA Biol , vol.9 , pp. 1134-1138
    • Westra, E.R.1    Nilges, B.2    Van Erp, P.B.3    Van Der Oost, J.4    Dame, R.T.5    Brouns, S.J.6
  • 75
    • 77956621546 scopus 로고    scopus 로고
    • H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
    • PMID:20659289
    • Westra ER, Pul U, Heidrich N, Jore MM, Lundgren M, Stratmann T, et al. H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol Microbiol 2010; 77:1380-93; PMID:20659289; http://dx.doi.org/10.1111/j.1365-2958.2010.07315.x.
    • (2010) Mol Microbiol , vol.77 , pp. 1380-1393
    • Westra, E.R.1    Pul, U.2    Heidrich, N.3    Jore, M.M.4    Lundgren, M.5    Stratmann, T.6
  • 76
    • 84862657238 scopus 로고    scopus 로고
    • CRISPR: New horizons in phage resistance and strain identification
    • PMID:22224556
    • Barrangou R, Horvath P. CRISPR: new horizons in phage resistance and strain identification. Annu Rev Food Sci Technol 2012; 3:143-62; PMID:22224556; http://dx.doi.org/10.1146/annurev-food-022811-101134.
    • (2012) Annu Rev Food Sci Technol , vol.3 , pp. 143-162
    • Barrangou, R.1    Horvath, P.2
  • 77
    • 4344692495 scopus 로고    scopus 로고
    • Genetic evidence identifying the true gluconeogenic fructose-1,6- bisphosphatase in Thermococcus kodakaraensis and other hyperthermophiles
    • PMID:15317785
    • Sato T, Imanaka H, Rashid N, Fukui T, Atomi H, Imanaka T. Genetic evidence identifying the true gluconeogenic fructose-1,6-bisphosphatase in Thermococcus kodakaraensis and other hyperthermophiles. J Bacteriol 2004; 186:5799-807; PMID:15317785; http://dx.doi.org/10.1128/JB.186.17.5799-5807.2004.
    • (2004) J Bacteriol , vol.186 , pp. 5799-5807
    • Sato, T.1    Imanaka, H.2    Rashid, N.3    Fukui, T.4    Atomi, H.5    Imanaka, T.6
  • 78
    • 0037215528 scopus 로고    scopus 로고
    • Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1
    • PMID:12486058
    • Sato T, Fukui T, Atomi H, Imanaka T. Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Bacteriol 2003; 185:210-20; PMID:12486058; http://dx.doi.org/10.1128/JB.185.1.210-220.2003.
    • (2003) J Bacteriol , vol.185 , pp. 210-220
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 79
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • PMID:19261174
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009; 10:R25; PMID:19261174; http://dx.doi.org/10.1186/gb-2009-10-3-r25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 80
    • 79953282591 scopus 로고    scopus 로고
    • Thermococcus kodakarensis as a host for gene expression and protein secretion
    • PMID:21278271
    • Takemasa R, Yokooji Y, Yamatsu A, Atomi H, Imanaka T. Thermococcus kodakarensis as a host for gene expression and protein secretion. Appl Environ Microbiol 2011; 77:2392-8; PMID:21278271; http://dx.doi.org/10.1128/AEM.01005- 10.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2392-2398
    • Takemasa, R.1    Yokooji, Y.2    Yamatsu, A.3    Atomi, H.4    Imanaka, T.5
  • 81
    • 70350514952 scopus 로고    scopus 로고
    • Pantoate kinase and phosphopantothenate synthetase, two novel enzymes necessary for CoA biosynthesis in the Archaea
    • PMID:19666462
    • Yokooji Y, Tomita H, Atomi H, Imanaka T. Pantoate kinase and phosphopantothenate synthetase, two novel enzymes necessary for CoA biosynthesis in the Archaea. J Biol Chem 2009; 284:28137-45; PMID:19666462; http://dx.doi.org/10.1074/jbc.M109.009696.
    • (2009) J Biol Chem , vol.284 , pp. 28137-28145
    • Yokooji, Y.1    Tomita, H.2    Atomi, H.3    Imanaka, T.4
  • 82
    • 33749533435 scopus 로고    scopus 로고
    • Cell-free protein synthesis at high temperatures using the lysate of a hyperthermophile
    • PMID:16730835
    • Endoh T, Kanai T, Sato YT, Liu DV, Yoshikawa K, Atomi H, et al. Cell-free protein synthesis at high temperatures using the lysate of a hyperthermophile. J Biotechnol 2006; 126:186-95; PMID:16730835; http://dx.doi.org/10.1016/j. jbiotec.2006.04.010.
    • (2006) J Biotechnol , vol.126 , pp. 186-195
    • Endoh, T.1    Kanai, T.2    Sato, Y.T.3    Liu, D.V.4    Yoshikawa, K.5    Atomi, H.6
  • 83
    • 84862196975 scopus 로고    scopus 로고
    • The UCSC Archaeal Genome Browser: 2012 Update
    • PMID:22080555
    • Chan PP, Holmes AD, Smith AM, Tran D, Lowe TM. The UCSC Archaeal Genome Browser: 2012 update. Nucleic Acids Res 2012; 40(Database issue):D646-52; PMID:22080555; http://dx.doi.org/10.1093/nar/gkr990.
    • (2012) Nucleic Acids Res , vol.40 , Issue.DATABASE ISSUE
    • Chan, P.P.1    Holmes, A.D.2    Smith, A.M.3    Tran, D.4    Lowe, T.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.