-
1
-
-
84959852082
-
Lactic metabolism revisited: Metabolism of lactic acid bacteria in food fermentations and food biotechnology
-
Gänzle, M. G. Lactic metabolism revisited: Metabolism of lactic acid bacteria in food fermentations and food biotechnology. Curr. Opin. Food Sci. 2, 106-117 (2015).
-
(2015)
Curr. Opin. Food Sci
, vol.2
, pp. 106-117
-
-
Gänzle, M.G.1
-
2
-
-
50049098340
-
Ecological role of lactobacilli in the gastrointestinal tract: Implications for fundamental and biomedical research
-
Walter, J. Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research. Appl. Environ. Microbiol. 74, 4985-4996 (2008).
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 4985-4996
-
-
Walter, J.1
-
3
-
-
0032858422
-
Non-dairy lactic fermentations: The cereal world
-
Vogel, R. F. et al. Non-dairy lactic fermentations: The cereal world. Antonie van Leeuwenhoek 76, 403-411 (1999).
-
(1999)
Antonie van Leeuwenhoek
, vol.76
, pp. 403-411
-
-
Vogel, R.F.1
-
4
-
-
77149149718
-
Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution
-
Oh, P. L. et al. Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution. ISME J. 4, 377-387 (2010).
-
(2011)
ISME J
, vol.4
, pp. 377-387
-
-
Oh, P.L.1
-
5
-
-
84908405235
-
From prediction to function using evolutionary genomics: Human-specific ecotypes of Lactobacillus reuteri have diverse probiotic functions
-
Spinler, J. K. et al. From prediction to function using evolutionary genomics: human-specific ecotypes of Lactobacillus reuteri have diverse probiotic functions. Genome Biol. Evol. 6, 1772-1789 (2014).
-
(2014)
Genome Biol. Evol
, vol.6
, pp. 1772-1789
-
-
Spinler, J.K.1
-
6
-
-
0037437445
-
Contribution of reutericyclin production to the stable persistence of Lactobacillus reuteri in an industrial sourdough fermentation
-
Gänzle, M. G. & Vogel, R. F. Contribution of reutericyclin production to the stable persistence of Lactobacillus reuteri in an industrial sourdough fermentation. Int. J. Food Microbiol. 80, 31-45 (2002).
-
(2002)
Int. J. Food Microbiol
, vol.80
, pp. 31-45
-
-
Gänzle, M.G.1
Vogel, R.F.2
-
7
-
-
80052276610
-
Microbiological and chemical characterisation of ting, a sorghum-based sourdough product from Botswana
-
Sekwati-Monang, B. & Gänzle, M. G. Microbiological and chemical characterisation of ting, a sorghum-based sourdough product from Botswana. Int. J. Food Microbiol. 150, 115-121 (2011).
-
(2011)
Int. J. Food Microbiol
, vol.150
, pp. 115-121
-
-
Sekwati-Monang, B.1
Gänzle, M.G.2
-
8
-
-
0037224663
-
Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis
-
Meroth, C. B., Walter, J., Hertel, C., Brandt, M. J. & Hammes, W. P. Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 69, 475-482 (2003).
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 475-482
-
-
Meroth, C.B.1
Walter, J.2
Hertel, C.3
Brandt, M.J.4
Hammes, W.P.5
-
9
-
-
0001630785
-
Neue erkenntnisse zum okosystem sauerteig und zur physiologie der sauerteigtypischen stämme lactobacillus sanfrancisco und Lactobacillus pontis
-
Bocker, G., Stolz, P. & Hammes, W. P. Neue Erkenntnisse zum kosystem Sauerteig und zur Physiologie der sauerteigtypischen Stämme Lactobacillus sanfrancisco und Lactobacillus pontis. Getreide Mehl Brot 49, 370-374 (1995).
-
(1995)
Getreide Mehl Brot
, vol.49
, pp. 370-374
-
-
Bocker, G.1
Stolz, P.2
Hammes, W.P.3
-
10
-
-
84906342536
-
Effect of lineage-specific metabolic traits of Lactobacillus reuteri on sourdough microbial ecology
-
Lin, X. B. & Gänzle, M. G. Effect of lineage-specific metabolic traits of Lactobacillus reuteri on sourdough microbial ecology. Appl. Environ. Microbiol. 80, 5782-5789 (2014).
-
(2014)
Appl. Environ. Microbiol
, vol.80
, pp. 5782-5789
-
-
Lin, X.B.1
Gänzle, M.G.2
-
11
-
-
84866153553
-
Intestinal origin of sourdough Lactobacillus reuteri isolates as revealed by phylogenetic, genetic, and physiological analysis
-
Su, M. S. W., Oh, P. L., Walter, J. & Gänzle, M. G. Intestinal origin of sourdough Lactobacillus reuteri isolates as revealed by phylogenetic, genetic, and physiological analysis. Appl. Environ. Microbiol. 78, 6777-6780 (2012).
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 6777-6780
-
-
Su, M.S.W.1
Oh, P.L.2
Walter, J.3
Gänzle, M.G.4
-
12
-
-
84907033450
-
Lactobacillus reuteri 100-23 modulates urea hydrolysis in the murine stomach
-
Wilson, C. M. et al. Lactobacillus reuteri 100-23 modulates urea hydrolysis in the murine stomach. Appl. Environ. Microbiol. 80, 6104-6113 (2014).
-
(2014)
Appl. Environ. Microbiol
, vol.80
, pp. 6104-6113
-
-
Wilson, C.M.1
-
13
-
-
84897061329
-
Novel two-component regulatory systems play a role in biofilm formation of Lactobacillus reuteri rodent isolate 100-23
-
Su, M. S. & Gänzle, M. G. Novel two-component regulatory systems play a role in biofilm formation of Lactobacillus reuteri rodent isolate 100-23. Microbiology 160, 795-806 (2014).
-
(2014)
Microbiology
, vol.160
, pp. 795-806
-
-
Su, M.S.1
Gänzle, M.G.2
-
14
-
-
84892690253
-
Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont
-
Frese, S. A. et al. Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont. PLoS Genet. 9:e1004057 (2013).
-
(2013)
PLoS Genet
, vol.9
, pp. e1004057
-
-
Frese, S.A.1
-
15
-
-
79952266302
-
The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri
-
Frese, S. A. et al. The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet. 7, e1001314 (2011).
-
(2011)
PLoS Genet
, vol.7
, pp. e1001314
-
-
Frese, S.A.1
-
16
-
-
84924709775
-
Genetic determinants of reutericyclin biosynthesis in Lactobacillus reuteri
-
Lin, X. B. et al. Genetic determinants of reutericyclin biosynthesis in Lactobacillus reuteri. Appl. Environ. Microbiol. 81, 2032-2041 (2015).
-
(2015)
Appl. Environ. Microbiol
, vol.81
, pp. 2032-2041
-
-
Lin, X.B.1
-
17
-
-
32044464336
-
Effect of membrane lateral pressure on the expression of fructosyltransferases in Lactobacillus reuteri
-
Schwab, C. & Gänzle, M. G. Effect of membrane lateral pressure on the expression of fructosyltransferases in Lactobacillus reuteri. Syst. Appl. Microbiol. 29, 89-99 (2006).
-
(2006)
Syst. Appl. Microbiol
, vol.29
, pp. 89-99
-
-
Schwab, C.1
Gänzle, M.G.2
-
18
-
-
56049119880
-
Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production
-
Morita, H. et al. Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production. DNA Res. 15, 151-161 (2008).
-
(2008)
DNA Res
, vol.15
, pp. 151-161
-
-
Morita, H.1
-
19
-
-
77956936208
-
Metabolic pathway of α -ketoglutarate in Lactobacillus sanfranciscensis and Lactobacillus reuteri during sourdough fermentation
-
Zhang, C. & Ganzle, M. G. Metabolic pathway of α -ketoglutarate in Lactobacillus sanfranciscensis and Lactobacillus reuteri during sourdough fermentation. J. Appl. Microbiol. 109, 1301-1310 (2010).
-
(2011)
J. Appl. Microbiol
, vol.109
, pp. 1301-1310
-
-
Zhang, C.1
Gänzle, M.G.2
-
20
-
-
80052197161
-
Contribution of glutamate decarboxylase in Lactobacillus reuteri to acid resistance and persistence in sourdough fermentation
-
Su, M. S. W., Schlicht, S. & Gänzle, M. G. Contribution of glutamate decarboxylase in Lactobacillus reuteri to acid resistance and persistence in sourdough fermentation. Microb. Cell Factories 10 (Suppl 1), S8 (2011).
-
(2011)
Microb. Cell Factories
, vol.10
, pp. S8
-
-
Su, M.S.W.1
Schlicht, S.2
Gänzle, M.G.3
-
21
-
-
84870178114
-
Killing as means of promoting biodiversity
-
Abrudan, M. I., Brown, S. & Rozen, D. E. Killing as means of promoting biodiversity. Biochem Soc. Trans. 40, 1512-1516 (2012).
-
(2012)
Biochem Soc. Trans
, vol.40
, pp. 1512-1516
-
-
Abrudan, M.I.1
Brown, S.2
Rozen, D.E.3
-
22
-
-
67650074198
-
Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter
-
Lefébure, T. & Stanhope, M. J. Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter. Genome Res. 19, 1224-1232 (2009).
-
(2009)
Genome Res
, vol.19
, pp. 1224-1232
-
-
Lefébure, T.1
Stanhope, M.J.2
-
23
-
-
34548846699
-
Evolution of the core and pan-genome of Streptococcus: Positive selection, recombination, and genome composition
-
Lefébure, T. & Stanhope, M. J. Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition. Genome Biol. 8, R71 (2007).
-
(2007)
Genome Biol
, vol.8
, pp. R71
-
-
Lefébure, T.1
Stanhope, M.J.2
-
24
-
-
51349158939
-
Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes
-
Orsi, R. H., Sun, Q. & Wiedmann, M. Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes. BMC Evol. Biol. 8, 233 (2008).
-
(2008)
BMC Evol. Biol
, vol.8
, pp. 233
-
-
Orsi, R.H.1
Sun, Q.2
Wiedmann, M.3
-
25
-
-
72249097352
-
Growth rate-dependent global effects on gene expression in bacteria
-
Klumpp, S., Zhang, Z. & Hwa, T. Growth rate-dependent global effects on gene expression in bacteria. Cell 139, 1366-1375.
-
Cell
, vol.139
, pp. 1366-1375
-
-
Klumpp, S.1
Zhang, Z.2
Hwa, T.3
-
26
-
-
80052250365
-
Genomic analysis reveals Lactobacillus sanfranciscensis as stable element in traditional sourdoughs
-
Vogel, R. F. et al. Genomic analysis reveals Lactobacillus sanfranciscensis as stable element in traditional sourdoughs. Microb Cell Fact. 10 Suppl 1, S6 (2011).
-
(2011)
Microb Cell Fact
, vol.10
, Issue.6
-
-
Vogel, R.F.1
-
27
-
-
77954696677
-
Ecology of exopolysaccharide formation by lactic acid bacteria: Sucrose utilization, stress tolerance, and biofilm formation] Bacterial polysaccharides
-
[Ullrich, M. (Ed.)][263-278] Caister Academic Press Norfolk
-
Gänzle, M. G. & Schwab, C. [Ecology of exopolysaccharide formation by lactic acid bacteria: Sucrose utilization, stress tolerance, and biofilm formation] Bacterial polysaccharides. Current innovations and future trends. [Ullrich, M. (Ed.)][263-278](Caister Academic Press Norfolk, 2009).
-
(2009)
Current Innovations and Future Trends
-
-
Gänzle, M.G.1
Schwab, C.2
-
28
-
-
33748917136
-
Carbohydrate, peptide and lipid metabolism of lactobacilli in sourdough
-
Gänzle, M. G., Vermeulen, N. & Vogel, R. F. Carbohydrate, peptide and lipid metabolism of lactobacilli in sourdough. Food Microbiol. 24, 128-138 (2007).
-
(2007)
Food Microbiol
, vol.24
, pp. 128-138
-
-
Gänzle, M.G.1
Vermeulen, N.2
Vogel, R.F.3
-
29
-
-
84884191741
-
The carbohydrate metabolism signature of Lactococcus lactis strain A12 reveals its sourdough ecosystem origin
-
Passerini, D. et al. The carbohydrate metabolism signature of Lactococcus lactis strain A12 reveals its sourdough ecosystem origin. Appl. Environ. Microbiol. 79, 5844-5852 (2013).
-
(2013)
Appl. Environ. Microbiol
, vol.79
, pp. 5844-5852
-
-
Passerini, D.1
-
30
-
-
84901923222
-
Gene expression of lactobacilli in murine forestomach biofilms
-
Schwab, C., Tweit, A. T., Schleper, C. & Urich, T. Gene expression of lactobacilli in murine forestomach biofilms. Microb. Biotechnol. 7, 347-359 (2014).
-
(2014)
Microb. Biotechnol
, vol.7
, pp. 347-359
-
-
Schwab, C.1
Tweit, A.T.2
Schleper, C.3
Urich, T.4
-
31
-
-
84926433439
-
Fermented foods as experimentally tractable microbial ecosystems
-
Wolfe, B. E. & Dutton, R. J. Fermented foods as experimentally tractable microbial ecosystems. Cell 161, 49-55 (2015).
-
(2015)
Cell
, vol.161
, pp. 49-55
-
-
Wolfe, B.E.1
Dutton, R.J.2
-
32
-
-
0018347481
-
Association of rat, pig, and fowl biotypes of lactobacilli with the stomach of gnotobiotic mice
-
Wesney, E. & Tannock, G. W. Association of rat, pig, and fowl biotypes of lactobacilli with the stomach of gnotobiotic mice. Microb. Ecol. 5, 35-42 (1979).
-
(1979)
Microb. Ecol
, vol.5
, pp. 35-42
-
-
Wesney, E.1
Tannock, G.W.2
-
33
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz, R. K. et al. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9, 75 (2009).
-
(2009)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
-
34
-
-
3543051830
-
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
-
Darling, A. C., Mau, B., Blattner, F. R. & Perna, N. T. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14, 1394-1403 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
35
-
-
79551599525
-
Mugsy: Fast multiple alignment of closely related whole genomes
-
Angiuoli, S. V. & Salzberg, S. L. Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27, 334-342 (2010).
-
(2011)
Bioinformatics
, vol.27
, pp. 334-342
-
-
Angiuoli, S.V.1
Salzberg, S.L.2
-
36
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera, G. & Castresana, J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 56, 564-577 (2007).
-
(2007)
Syst. Biol
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
37
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-Analysis of large phylogenies
-
Stamatakis, A. RAxML version 8: a tool for phylogenetic analysis and post-Analysis of large phylogenies. Bioinformatics 30, 1312-1313 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
38
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li, L., Stoeckert, C. J. Jr. & Roos, D. S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003).
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
39
-
-
0036719929
-
Genome trees and the tree of life
-
Wolf, Y. I., Rogozin, I. B., Grishin, N. V. & Koonin, E. V. Genome trees and the tree of life. Trends Genet. 18, 472-479 (2002).
-
(2002)
Trends Genet
, vol.18
, pp. 472-479
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Grishin, N.V.3
Koonin, E.V.4
-
40
-
-
84890330527
-
MEGA6: Molecular evolutionary genetics analysis version 6.0
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725-2729 (2013).
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
41
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar R. ., C.1
-
42
-
-
33747847779
-
PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
-
(Web Server issue), W609-612
-
Suyama, M., Torrents, D. & Bork, P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34 (Web Server issue), W609-612 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
43
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
44
-
-
8544225780
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
-
Wong, W. S., Yang, Z., Goldman, N. & Nielsen, R. Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 168, 1041-1051 (2004).
-
(2004)
Genetics
, vol.168
, pp. 1041-1051
-
-
Wong, W.S.1
Yang, Z.2
Goldman, N.3
Nielsen, R.4
-
45
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
Yang, Z., Wong, W. S. & Nielsen, R. Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22, 1107-1118 (2005).
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.2
Nielsen, R.3
-
46
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
Zhang, J., Nielsen, R. & Yang, Z. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol. Biol. Evol. 22, 2472-2479 (2005).
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
-
47
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R. L. et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4, 41 (2003).
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
-
48
-
-
84903525876
-
Quantitative high-resolution melting PCR analysis for monitoring of fermentation microbiota in sourdough
-
Lin, X. B. & Gänzle, M. G. Quantitative high-resolution melting PCR analysis for monitoring of fermentation microbiota in sourdough. Int. J. Food Microbiol. 186, 42-48 (2014).
-
(2014)
Int. J. Food Microbiol
, vol.186
, pp. 42-48
-
-
Lin, X.B.1
Gänzle, M.G.2
-
49
-
-
0037062936
-
Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors
-
Kerr, B., Riley, M. A., Feldman, M. W. & Bohannan, B. J. M. Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 418, 171-174 (2002).
-
(2002)
Nature
, vol.418
, pp. 171-174
-
-
Kerr, B.1
Riley, M.A.2
Feldman, M.W.3
Bohannan, B.J.M.4
|