Effective Leveraging of Targeted Search Spaces for Improving Peptide Identification in Tandem Mass Spectrometry Based Proteomics

Journal of Proteome Research

Volumn 14, Issue 12, 2015, Pages 5169-5178

  Shanmugam, Avinash K ^a   Nesvizhskii, Alexey I ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

combined searches; GPMDB; integrative analysis; RNA Seq; search space restriction; tandem mass spectrometry; targeted databases

Indexed keywords

PEPTIDE; PROTEOME;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEOMICS; RNA SEQUENCE; TANDEM MASS SPECTROMETRY; WORKFLOW; CHEMISTRY; GENETICS; HELA CELL LINE; HUMAN; K-562 CELL LINE; NUCLEIC ACID DATABASE; PROCEDURES; SEARCH ENGINE; SEQUENCE ALIGNMENT; STATISTICS AND NUMERICAL DATA;

DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; HELA CELLS; HUMANS; K562 CELLS; PEPTIDES; PROTEOMICS; SEARCH ENGINE; SEQUENCE ALIGNMENT; TANDEM MASS SPECTROMETRY; WORKFLOW;

EID: 84949035128     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/acs.jproteome.5b00504     Document Type: Article

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