-
2
-
-
3543042493
-
Periodic gene expression program of the fission yeast cell cycle
-
PMID: 15195092
-
Rustici G, Mata J, Kivinen K, Lió P, Penkett CJ, Burns G, et al. (2004) Periodic gene expression program of the fission yeast cell cycle. Nat Genet 36: 809-817. doi: 10.1038/ng1377 PMID: 15195092
-
(2004)
Nat Genet
, vol.36
, pp. 809-817
-
-
Rustici, G.1
Mata, J.2
Kivinen, K.3
Lió, P.4
Penkett, C.J.5
Burns, G.6
-
3
-
-
20044366888
-
Identification of cell cycle-regulated genes in fission yeast
-
PMID: 15616197
-
Peng X, Karuturi RKM, Miller LD, Lin K, Jia Y, Kondu P, et al. (2005) Identification of cell cycle-regulated genes in fission yeast. Mol Biol Cell 16: 1026-1042. doi: 10.1091/mbc.E04-04-0299 PMID: 15616197
-
(2005)
Mol Biol Cell
, vol.16
, pp. 1026-1042
-
-
Peng, X.1
Karuturi, R.K.M.2
Miller, L.D.3
Lin, K.4
Jia, Y.5
Kondu, P.6
-
4
-
-
22744437234
-
The cell cycle-regulated genes of Schizosaccharomyces pombe
-
PMID: 15966770
-
Oliva A, Rosebrock A, Ferrezuelo F, Pyne S, Chen H, Skiena S, et al. (2005) The cell cycle-regulated genes of Schizosaccharomyces pombe. PLoS Biol 3: e225. doi: 10.1371/journal.pbio.0030225 PMID: 15966770
-
(2005)
PLoS Biol
, vol.3
, pp. e225
-
-
Oliva, A.1
Rosebrock, A.2
Ferrezuelo, F.3
Pyne, S.4
Chen, H.5
Skiena, S.6
-
5
-
-
70149096483
-
The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1- S via negative feedback
-
PMID: 19714215
-
Aligianni S, Lackner DH, Klier S, Rustici G, Wilhelm BT, Marguerat S, et al. (2009) The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1- S via negative feedback. PLoS Genet 5: e1000626. doi: 10.1371/journal.pgen.1000626 PMID: 19714215
-
(2009)
PLoS Genet
, vol.5
, pp. e1000626
-
-
Aligianni, S.1
Lackner, D.H.2
Klier, S.3
Rustici, G.4
Wilhelm, B.T.5
Marguerat, S.6
-
6
-
-
49649096664
-
DNA replication checkpoint promotes G1-S transcription by inactivating the MBF repressor Nrm1
-
PMID: 18682565
-
De Bruin RAM, Kalashnikova TI, Aslanian A, Wohlschlegel J, Chahwan C, Yates JR 3rd, et al. (2008) DNA replication checkpoint promotes G1-S transcription by inactivating the MBF repressor Nrm1. Proc Natl Acad Sci U S A 105: 11230-11235. doi: 10.1073/pnas.0801106105 PMID: 18682565
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 11230-11235
-
-
De Bruin, R.A.M.1
Kalashnikova, T.I.2
Aslanian, A.3
Wohlschlegel, J.4
Chahwan, C.5
Yates, J.R.6
-
7
-
-
0034666395
-
The S. Pombe sep1 gene encodes a nuclear protein that is required for periodic expression of the cdc15 gene
-
PMID: 10996305
-
Zilahi E, Salimova E, Simanis V, Sipiczki M (2000) The S. pombe sep1 gene encodes a nuclear protein that is required for periodic expression of the cdc15 gene. FEBS Lett 481: 105-108. PMID: 10996305
-
(2000)
FEBS Lett
, vol.481
, pp. 105-108
-
-
Zilahi, E.1
Salimova, E.2
Simanis, V.3
Sipiczki, M.4
-
8
-
-
0038025418
-
The endo-beta- 1, 3-glucanase eng1p is required for dissolution of the primary septum during cell separation in Schizosaccharomyces pombe
-
PMID: 12665550
-
Martín-Cuadrado AB, Dueñas E, Sipiczki M, Vázquez de Aldana CR, del Rey F (2003) The endo-beta- 1, 3-glucanase eng1p is required for dissolution of the primary septum during cell separation in Schizosaccharomyces pombe. J Cell Sci 116: 1689-1698. doi: 10.1242/jcs.00377 PMID: 12665550
-
(2003)
J Cell Sci
, vol.116
, pp. 1689-1698
-
-
Martín-Cuadrado, A.B.1
Dueñas, E.2
Sipiczki, M.3
Vázquez De Aldana, C.R.4
Del Rey, F.5
-
9
-
-
4143059137
-
The forkhead transcription factor Fkh2 regulates the cell division cycle of Schizosaccharomyces pombe
-
PMID: 15302827
-
Bulmer R, Pic-Taylor A, Whitehall SK, Martin KA, Millar JBA, Quinn J, et al. (2004) The forkhead transcription factor Fkh2 regulates the cell division cycle of Schizosaccharomyces pombe. Eukaryot Cell 3: 944-954. doi: 10.1128/EC.3.4.944-954.2004 PMID: 15302827
-
(2004)
Eukaryot Cell
, vol.3
, pp. 944-954
-
-
Bulmer, R.1
Pic-Taylor, A.2
Whitehall, S.K.3
Martin, K.A.4
Millar, J.B.A.5
Quinn, J.6
-
10
-
-
10944240978
-
Fkh2p and Sep1p regulate mitotic gene transcription in fission yeast
-
PMID: 15509866
-
Buck V, Ng SS, Ruiz-Garcia AB, Papadopoulou K, Bhatti S, Samuel JM, et al. (2004) Fkh2p and Sep1p regulate mitotic gene transcription in fission yeast. J Cell Sci 117: 5623-5632. doi: 10.1242/jcs.01473 PMID: 15509866
-
(2004)
J Cell Sci
, vol.117
, pp. 5623-5632
-
-
Buck, V.1
Ng, S.S.2
Ruiz-Garcia, A.B.3
Papadopoulou, K.4
Bhatti, S.5
Samuel, J.M.6
-
11
-
-
0026567679
-
Control of DNA synthesis genes in fission yeast by the cell-cycle gene cdc10+
-
PMID: 1734281
-
Lowndes NF, McInerny CJ, Johnson AL, Fantes PA, Johnston LH (1992) Control of DNA synthesis genes in fission yeast by the cell-cycle gene cdc10+. Nature 355: 449-453. doi: 10.1038/355449a0 PMID: 1734281
-
(1992)
Nature
, vol.355
, pp. 449-453
-
-
Lowndes, N.F.1
McInerny, C.J.2
Johnson, A.L.3
Fantes, P.A.4
Johnston, L.H.5
-
12
-
-
78649744663
-
Regulation of cell cycle-specific gene expression in fission yeast by the Cdc14p-like phosphatase Clp1p
-
PMID: 21098641
-
Papadopoulou K, Chen J-S, Mead E, Feoktistova A, Petit C, Agarwal M, et al. (2010) Regulation of cell cycle-specific gene expression in fission yeast by the Cdc14p-like phosphatase Clp1p. J Cell Sci 123: 4374-4381. doi: 10.1242/jcs.073056 PMID: 21098641
-
(2010)
J Cell Sci
, vol.123
, pp. 4374-4381
-
-
Papadopoulou, K.1
Chen, J.-S.2
Mead, E.3
Feoktistova, A.4
Petit, C.5
Agarwal, M.6
-
13
-
-
34250854594
-
Differential regulation of repeated histone genes during the fission yeast cell cycle
-
PMID: 17452352
-
Takayama Y, Takahashi K (2007) Differential regulation of repeated histone genes during the fission yeast cell cycle. Nucleic Acids Res 35: 3223-3237. doi: 10.1093/nar/gkm213 PMID: 17452352
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3223-3237
-
-
Takayama, Y.1
Takahashi, K.2
-
14
-
-
70449448747
-
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
-
PMID: 19758441
-
Bushel PR, Heard NA, Gutman R, Liu L, Peddada SD, Pyne S (2009) Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle. BMC Syst Biol 3: 93. doi: 10. 1186/1752-0509-3-93 PMID: 19758441
-
(2009)
BMC Syst Biol
, vol.3
, Issue.93
-
-
Bushel, P.R.1
Heard, N.A.2
Gutman, R.3
Liu, L.4
Peddada, S.D.5
Pyne, S.6
-
15
-
-
25844489960
-
CSL: A notch above the rest
-
PMID: 16095948
-
Pursglove SE, Mackay JP (2005) CSL: a notch above the rest. Int J Biochem Cell Biol 37: 2472-2477. doi: 10.1016/j.biocel.2005.06.013 PMID: 16095948
-
(2005)
Int J Biochem Cell Biol
, vol.37
, pp. 2472-2477
-
-
Pursglove, S.E.1
Mackay, J.P.2
-
16
-
-
61849087835
-
Notch signaling mediates G1/S cell-cycle progression in T cells via cyclin D3 and its dependent kinases
-
PMID: 19001083
-
Joshi I, Minter LM, Telfer J, Demarest RM, Capobianco AJ, Aster JC, et al. (2009) Notch signaling mediates G1/S cell-cycle progression in T cells via cyclin D3 and its dependent kinases. Blood 113: 1689-1698. doi: 10.1182/blood-2008-03-147967 PMID: 19001083
-
(2009)
Blood
, vol.113
, pp. 1689-1698
-
-
Joshi, I.1
Minter, L.M.2
Telfer, J.3
Demarest, R.M.4
Capobianco, A.J.5
Aster, J.C.6
-
17
-
-
22344435698
-
Notch1 modulates timing of G1-S progression by inducing SKP2 transcription and p27 Kip1 degradation
-
PMID: 15998794
-
Sarmento LM, Huang H, Limon A, Gordon W, Fernandes J, Tavares MJ, et al. (2005) Notch1 modulates timing of G1-S progression by inducing SKP2 transcription and p27 Kip1 degradation. J Exp Med 202: 157-168. doi: 10.1084/jem.20050559 PMID: 15998794
-
(2005)
J Exp Med
, vol.202
, pp. 157-168
-
-
Sarmento, L.M.1
Huang, H.2
Limon, A.3
Gordon, W.4
Fernandes, J.5
Tavares, M.J.6
-
18
-
-
0034902568
-
Induction of cyclin D1 transcription and CDK2 activity by Notch(ic): Implication for cell cycle disruption in transformation by Notch(ic)
-
PMID: 11486031
-
Ronchini C, Capobianco AJ (2001) Induction of cyclin D1 transcription and CDK2 activity by Notch(ic): implication for cell cycle disruption in transformation by Notch(ic). Mol Cell Biol 21: 5925-5934. doi: 10. 1128/MCB.21.17.5925 PMID: 11486031
-
(2001)
Mol Cell Biol
, vol.21
, pp. 5925-5934
-
-
Ronchini, C.1
Capobianco, A.J.2
-
19
-
-
17844384528
-
Notch signaling is a direct determinant of keratinocyte growth arrest and entry into differentiation
-
PMID: 11432830
-
Rangarajan A, Talora C, Okuyama R, Nicolas M, Mammucari C, Oh H, et al. (2001) Notch signaling is a direct determinant of keratinocyte growth arrest and entry into differentiation. EMBO J 20: 3427-3436. doi: 10.1093/emboj/20.13.3427 PMID: 11432830
-
(2001)
EMBO J
, vol.20
, pp. 3427-3436
-
-
Rangarajan, A.1
Talora, C.2
Okuyama, R.3
Nicolas, M.4
Mammucari, C.5
Oh, H.6
-
20
-
-
34548489166
-
Fungal CSL transcription factors
-
PMID: 17629904
-
Převorovský M, Půta F, Folk P (2007) Fungal CSL transcription factors. BMC Genomics 8: 233. doi: 10.1186/1471-2164-8-233 PMID: 17629904
-
(2007)
BMC Genomics
, vol.8
, pp. 233
-
-
Převorovský, M.1
Půta, F.2
Folk, P.3
-
21
-
-
80051609608
-
N-termini of fungal CSL transcription factors are disordered, enriched in regulatory motifs and inhibit DNA binding in fission yeast
-
PMID: 21858190
-
Převorovský M, Atkinson SR, Ptáčková M, McLean JR, Gould K, Folk P, et al. (2011) N-termini of fungal CSL transcription factors are disordered, enriched in regulatory motifs and inhibit DNA binding in fission yeast. PLoS One 6: e23650. doi: 10.1371/journal.pone.0023650 PMID: 21858190
-
(2011)
PLoS One
, vol.6
, pp. e23650
-
-
Převorovský, M.1
Atkinson, S.R.2
Ptáčková, M.3
McLean, J.R.4
Gould, K.5
Folk, P.6
-
22
-
-
64049099635
-
Cbf11 and Cbf12, the fission yeast CSL proteins, play opposing roles in cell adhesion and coordination of cell and nuclear division
-
PMID: 19101542
-
Převorovský M, Groušl T, Staňurová J, Ryneš J, Nellen W, Půta F, et al. (2009) Cbf11 and Cbf12, the fission yeast CSL proteins, play opposing roles in cell adhesion and coordination of cell and nuclear division. Exp Cell Res 315: 1533-1547. doi: 10.1016/j.yexcr.2008.12.001 PMID: 19101542
-
(2009)
Exp Cell Res
, vol.315
, pp. 1533-1547
-
-
Převorovský, M.1
Groušl, T.2
Staňurová, J.3
Ryneš, J.4
Nellen, W.5
Půta, F.6
-
23
-
-
84875012092
-
Fission Yeast CSL Proteins Function as Transcription Factors
-
PMID: 23555033
-
Oravcová M, Teska M, Půta F, Folk P, Převorovský M (2013) Fission Yeast CSL Proteins Function as Transcription Factors. PLoS One 8: e59435. doi: 10.1371/journal.pone.0059435 PMID: 23555033
-
(2013)
PLoS One
, vol.8
, pp. e59435
-
-
Oravcová, M.1
Teska, M.2
Půta, F.3
Folk, P.4
Převorovský, M.5
-
24
-
-
84872021865
-
Deciphering the Transcriptional-Regulatory Network of Flocculation in Schizosaccharomyces pombe
-
PMID: 23236291
-
Kwon EG, Laderoute A, Chatfield-Reed K, Vachon L, Karagiannis J, Chua G (2012) Deciphering the Transcriptional-Regulatory Network of Flocculation in Schizosaccharomyces pombe. PLoS Genet 8: e1003104. doi: 10.1371/journal.pgen.1003104 PMID: 23236291
-
(2012)
PLoS Genet
, vol.8
, pp. e1003104
-
-
Kwon, E.G.1
Laderoute, A.2
Chatfield-Reed, K.3
Vachon, L.4
Karagiannis, J.5
Chua, G.6
-
25
-
-
84881058141
-
Functional characterization of fission yeast transcription factors by overexpression analysis
-
PMID: 23695302
-
Vachon L, Wood J, Kwon E-JG, Laderoute A, Chatfield-Reed K, Karagiannis J, et al. (2013) Functional characterization of fission yeast transcription factors by overexpression analysis. Genetics 194: 873-884. doi: 10.1534/genetics.113.150870 PMID: 23695302
-
(2013)
Genetics
, vol.194
, pp. 873-884
-
-
Vachon, L.1
Wood, J.2
E-Jg, K.3
Laderoute, A.4
Chatfield-Reed, K.5
Karagiannis, J.6
-
26
-
-
84894298369
-
A genome-wide resource of cell cycle and cell shape genes of fission yeast
-
PMID: 23697806
-
Hayles J, Wood V, Jeffery L, Hoe K- L, Kim D-U, Park HO, et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3: 130053. doi: 10.1098/rsob.130053 PMID: 23697806
-
(2013)
Open Biol
, vol.3
, pp. 130053
-
-
Hayles, J.1
Wood, V.2
Jeffery, L.3
Hoe, K.-L.4
Kim, D.-U.5
Park, H.O.6
-
27
-
-
84868684589
-
Posttranscriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in Schizosaccharomyces pombe
-
PMID: 22907753
-
Wells ML, Huang W, Li L, Gerrish KE, Fargo DC, Ozsolak F, et al. (2012) Posttranscriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in Schizosaccharomyces pombe. Mol Cell Biol 32: 4206-4214. doi: 10.1128/MCB.00325-12 PMID: 22907753
-
(2012)
Mol Cell Biol
, vol.32
, pp. 4206-4214
-
-
Wells, M.L.1
Huang, W.2
Li, L.3
Gerrish, K.E.4
Fargo, D.C.5
Ozsolak, F.6
-
28
-
-
84861335714
-
A systematic screen reveals new elements acting at the G2/M cell cycle control
-
PMID: 22624651
-
Navarro FJ, Nurse P (2012) A systematic screen reveals new elements acting at the G2/M cell cycle control. Genome Biol 13: R36. doi: 10.1186/gb-2012-13-5-r36 PMID: 22624651
-
(2012)
Genome Biol
, vol.13
, pp. R36
-
-
Navarro, F.J.1
Nurse, P.2
-
29
-
-
0032876649
-
The S. Pombe zfs1 gene is required to prevent septation if mitotic progression is inhibited
-
PMID: 10462526
-
Beltraminelli N, Murone M, Simanis V (1999) The S. pombe zfs1 gene is required to prevent septation if mitotic progression is inhibited. J Cell Sci 112 Pt 18: 3103-3114. PMID: 10462526
-
(1999)
J Cell Sci
, vol.112
, pp. 3103-3114
-
-
Beltraminelli, N.1
Murone, M.2
Simanis, V.3
-
30
-
-
0026025891
-
Molecular genetic analysis of fission yeast Schizosaccharomyces pombe
-
PMID: 2005825
-
Moreno S, Klar A, Nurse P (1991) Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol 194: 795-823. doi: 10.1534/genetics.107.076315 PMID: 2005825
-
(1991)
Methods Enzymol
, vol.194
, pp. 795-823
-
-
Moreno, S.1
Klar, A.2
Nurse, P.3
-
31
-
-
0031818471
-
Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe
-
PMID: 9717240
-
Bähler J, Wu JQ, Longtine MS, Shah NG, McKenzie A, Steever AB, et al. (1998) Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14: 943-951. doi: 10.1002/(SICI)1097-0061(199807)14:10<943::AID-YEA292>3.0.CO;2-Y PMID: 9717240
-
(1998)
Yeast
, vol.14
, pp. 943-951
-
-
Bähler, J.1
Wu, J.Q.2
Longtine, M.S.3
Shah, N.G.4
McKenzie, A.5
Steever, A.B.6
-
32
-
-
0034733688
-
A family of multifunctional thiamine-repressible expression vectors for fission yeast
-
PMID: 10861909
-
Moreno MB, Durán A, Ribas JC (2000) A family of multifunctional thiamine-repressible expression vectors for fission yeast. Yeast 16: 861-872. doi: 10.1002/1097-0061(20000630)16:9<861::AIDYEA577> 3.0.CO;2-9 PMID: 10861909
-
(2000)
Yeast
, vol.16
, pp. 861-872
-
-
Moreno, M.B.1
Durán, A.2
Ribas, J.C.3
-
33
-
-
84863205849
-
NIH Image to ImageJ: 25 years of image analysis
-
PMID: 22930834
-
Schneider CA, Rasband WS, Eliceiri KW (2012) NIH Image to ImageJ: 25 years of image analysis. Nat Methods 9: 671-675. doi: 10.1038/nmeth.2089 PMID: 22930834
-
(2012)
Nat Methods
, vol.9
, pp. 671-675
-
-
Schneider, C.A.1
Rasband, W.S.2
Eliceiri, K.W.3
-
34
-
-
84930481817
-
Nile red fluorescence screening facilitating neutral lipid phenotype determination in budding yeast, Saccharomyces cerevisiae, and the fission yeast Schizosaccharomyces pombe
-
PMID: 25948336
-
Rostron KA, Rolph CE, Lawrence CL (2015) Nile red fluorescence screening facilitating neutral lipid phenotype determination in budding yeast, Saccharomyces cerevisiae, and the fission yeast Schizosaccharomyces pombe. Antonie Van Leeuwenhoek 108: 97-106. doi: 10.1007/s10482-015-0467-6 PMID: 25948336
-
(2015)
Antonie van Leeuwenhoek
, vol.108
, pp. 97-106
-
-
Rostron, K.A.1
Rolph, C.E.2
Lawrence, C.L.3
-
35
-
-
27744435957
-
Additional vectors for PCRbased gene tagging in Saccharomyces cerevisiae and Schizosaccharomyces pombe using nourseothricin resistance
-
PMID: 16200506
-
Van Driessche B, Tafforeau L, Hentges P, Carr AM, Vandenhaute J (2005) Additional vectors for PCRbased gene tagging in Saccharomyces cerevisiae and Schizosaccharomyces pombe using nourseothricin resistance. Yeast 22: 1061-1068. doi: 10.1002/yea.1293 PMID: 16200506
-
(2005)
Yeast
, vol.22
, pp. 1061-1068
-
-
Van Driessche, B.1
Tafforeau, L.2
Hentges, P.3
Carr, A.M.4
Vandenhaute, J.5
-
36
-
-
34548818740
-
High-throughput knockout screen in fission yeast
-
PMID: 17406492
-
Gregan J, Rabitsch PK, Rumpf C, Novatchkova M, Schleiffer A, Nasmyth K (2006) High-throughput knockout screen in fission yeast. Nat Protoc 1: 2457-2464. doi: 10.1038/nprot.2006.385 PMID: 17406492
-
(2006)
Nat Protoc
, vol.1
, pp. 2457-2464
-
-
Gregan, J.1
Rabitsch, P.K.2
Rumpf, C.3
Novatchkova, M.4
Schleiffer, A.5
Nasmyth, K.6
-
37
-
-
9144229663
-
Whole-genome microarrays of fission yeast: Characteristics, accuracy, reproducibility, and processing of array data
-
PMID: 12854975
-
Lyne R, Burns G, Mata J, Penkett CJ, Rustici G, Chen D, et al. (2003) Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data. BMC Genomics 4: 27. doi: 10.1186/1471-2164-4-27 PMID: 12854975
-
(2003)
BMC Genomics
, vol.4
, pp. 27
-
-
Lyne, R.1
Burns, G.2
Mata, J.3
Penkett, C.J.4
Rustici, G.5
Chen, D.6
-
38
-
-
67649834440
-
ChIP-seq: Using highthroughput sequencing to discover protein-DNA interactions
-
PMID: 19275939
-
Schmidt D, Wilson MD, Spyrou C, Brown GD, Hadfield J, Odom DT (2009) ChIP-seq: using highthroughput sequencing to discover protein-DNA interactions. Methods 48: 240-248. doi: 10.1016/j. ymeth.2009.03.001 PMID: 19275939
-
(2009)
Methods
, vol.48
, pp. 240-248
-
-
Schmidt, D.1
Wilson, M.D.2
Spyrou, C.3
Brown, G.D.4
Hadfield, J.5
Odom, D.T.6
-
39
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
PMID: 19451168
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760. doi: 10.1093/bioinformatics/btp324 PMID: 19451168
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
40
-
-
68549104404
-
The Sequence Alignment/ Map format and SAMtools
-
PMID: 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. (2009) The Sequence Alignment/ Map format and SAMtools. Bioinformatics 25: 2078-2079. doi: 10.1093/bioinformatics/btp352 PMID: 19505943
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
41
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
PMID: 22517427
-
Thorvaldsdóttir H, Robinson JT, Mesirov JP (2013) Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration. Brief Bioinform 14: 178-192. doi: 10.1093/bib/ bbs017 PMID: 22517427
-
(2013)
Brief Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
42
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
PMID: 18798982
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol 9: R137. doi: 10.1186/gb-2008-9-9-r137 PMID: 18798982
-
(2008)
Genome Biol
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
-
43
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
PMID: 7584402
-
Bailey TL, Elkan C (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36. PMID: 7584402
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
44
-
-
0025008069
-
Mitochondrial growth and DNA synthesis occur in the absence of nuclear DNA replication in fission yeast
-
PMID: 2074269
-
Sazer S, Sherwood SW (1990) Mitochondrial growth and DNA synthesis occur in the absence of nuclear DNA replication in fission yeast. J Cell Sci 97 (Pt 3): 509-516. PMID: 2074269
-
(1990)
J Cell Sci
, vol.97
, pp. 509-516
-
-
Sazer, S.1
Sherwood, S.W.2
-
45
-
-
79952228971
-
Cell-cycle analysis of fission yeast cells by flow cytometry
-
PMID: 21386895
-
Knutsen JHJ, Rein ID, Rothe C, Stokke T, Grallert B, Boye E (2011) Cell-cycle analysis of fission yeast cells by flow cytometry. PLoS One 6: e17175. doi: 10.1371/journal.pone.0017175 PMID: 21386895
-
(2011)
PLoS One
, vol.6
, pp. e17175
-
-
Knutsen, J.H.J.1
Rein, I.D.2
Rothe, C.3
Stokke, T.4
Grallert, B.5
Boye, E.6
-
46
-
-
84887870649
-
Systematic genetic analysis of transcription factors to map the fission yeast transcription- regulatory network
-
PMID: 24256277
-
Chua G (2013) Systematic genetic analysis of transcription factors to map the fission yeast transcription- regulatory network. Biochem Soc Trans 41: 1696-1700. doi: 10.1042/BST20130224 PMID: 24256277
-
(2013)
Biochem Soc Trans
, vol.41
, pp. 1696-1700
-
-
Chua, G.1
-
47
-
-
33645743420
-
The more the merrier: Comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast
-
PMID: 16544289
-
Marguerat S, Jensen TS, de Lichtenberg U, Wilhelm BT, Jensen LJ, Bähler J (2006) The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast. Yeast 23: 261-277. doi: 10.1002/yea.1351 PMID: 16544289
-
(2006)
Yeast
, vol.23
, pp. 261-277
-
-
Marguerat, S.1
Jensen, T.S.2
De Lichtenberg, U.3
Wilhelm, B.T.4
Jensen, L.J.5
Bähler, J.6
-
48
-
-
0036729529
-
The transcriptional program of meiosis and sporulation in fission yeast
-
PMID: 12161753
-
Mata J, Lyne R, Burns G, Bähler J (2002) The transcriptional program of meiosis and sporulation in fission yeast. Nat Genet 32: 143-147. doi: 10.1038/ng951 PMID: 12161753
-
(2002)
Nat Genet
, vol.32
, pp. 143-147
-
-
Mata, J.1
Lyne, R.2
Burns, G.3
Bähler, J.4
-
49
-
-
12244267727
-
Global transcriptional responses of fission yeast to environmental stress
-
PMID: 12529438
-
Chen D, Toone WM, Mata J, Lyne R, Burns G, Kivinen K, et al. (2003) Global transcriptional responses of fission yeast to environmental stress. Mol Biol Cell 14: 214-229. doi: 10.1091/mbc.E02-08-0499 PMID: 12529438
-
(2003)
Mol Biol Cell
, vol.14
, pp. 214-229
-
-
Chen, D.1
Toone, W.M.2
Mata, J.3
Lyne, R.4
Burns, G.5
Kivinen, K.6
-
50
-
-
84858305675
-
PomBase: A comprehensive online resource for fission yeast
-
PMID: 22039153
-
Wood V, Harris MA, McDowall MD, Rutherford K, Vaughan BW, Staines DM, et al. (2012) PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res 40: D695-D699. doi: 10.1093/nar/ gkr853 PMID: 22039153
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D695-D699
-
-
Wood, V.1
Harris, M.A.2
McDowall, M.D.3
Rutherford, K.4
Vaughan, B.W.5
Staines, D.M.6
-
51
-
-
0038601809
-
Genome-wide identification of fungal GPI proteins
-
PMID: 12845604
-
De Groot PWJ, Hellingwerf KJ, Klis FM (2003) Genome-wide identification of fungal GPI proteins. Yeast 20: 781-796. doi: 10.1002/yea.1007 PMID: 12845604
-
(2003)
Yeast
, vol.20
, pp. 781-796
-
-
De Groot, P.W.J.1
Hellingwerf, K.J.2
Klis, F.M.3
-
52
-
-
0037363922
-
HES and HERP families: Multiple effectors of the Notch signaling pathway
-
PMID: 12548545
-
Iso T, Kedes L, Hamamori Y (2003) HES and HERP families: multiple effectors of the Notch signaling pathway. J Cell Physiol 194: 237-255. doi: 10.1002/jcp.10208 PMID: 12548545
-
(2003)
J Cell Physiol
, vol.194
, pp. 237-255
-
-
Iso, T.1
Kedes, L.2
Hamamori, Y.3
-
53
-
-
0037031928
-
The Srk1 protein kinase is a target for the Sty1 stress-activated MAPK in fission yeast
-
PMID: 12080074
-
Smith DA, Toone WM, Chen D, Bahler J, Jones N, Morgan BA, et al. (2002) The Srk1 protein kinase is a target for the Sty1 stress-activated MAPK in fission yeast. J Biol Chem 277: 33411-33421. doi: 10. 1074/jbc.M204593200 PMID: 12080074
-
(2002)
J Biol Chem
, vol.277
, pp. 33411-33421
-
-
Smith, D.A.1
Toone, W.M.2
Chen, D.3
Bahler, J.4
Jones, N.5
Morgan, B.A.6
-
54
-
-
35748973557
-
TOR signalling regulates mitotic commitment through the stress MAP kinase pathway and the Polo and Cdc2 kinases
-
PMID: 17952063
-
Petersen J, Nurse P (2007) TOR signalling regulates mitotic commitment through the stress MAP kinase pathway and the Polo and Cdc2 kinases. Nat Cell Biol 9: 1263-1272. doi: 10.1038/ncb1646 PMID: 17952063
-
(2007)
Nat Cell Biol
, vol.9
, pp. 1263-1272
-
-
Petersen, J.1
Nurse, P.2
-
55
-
-
34547657814
-
Molecular mechanisms underlying the mitosis-meiosis decision
-
PMID: 17674143
-
Harigaya Y, Yamamoto M (2007) Molecular mechanisms underlying the mitosis-meiosis decision. Chromosome Res 15: 523-537. doi: 10.1007/s10577-007-1151-0 PMID: 17674143
-
(2007)
Chromosome Res
, vol.15
, pp. 523-537
-
-
Harigaya, Y.1
Yamamoto, M.2
-
56
-
-
0028232358
-
Recognition sequence of a highly conserved DNA binding protein RBP-J kappa
-
PMID: 8152928
-
Tun T, Hamaguchi Y, Matsunami N, Furukawa T, Honjo T, Kawaichi M (1994) Recognition sequence of a highly conserved DNA binding protein RBP-J kappa. Nucleic Acids Res 22: 965-971. PMID: 8152928
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 965-971
-
-
Tun, T.1
Hamaguchi, Y.2
Matsunami, N.3
Furukawa, T.4
Honjo, T.5
Kawaichi, M.6
-
57
-
-
78649638720
-
Notch and MAML-1 complexation do not detectably alter the DNA binding specificity of the transcription factor CSL
-
PMID: 21124806
-
Del Bianco C, Vedenko A, Choi SH, Berger MF, Shokri L, Bulyk ML, et al. (2010) Notch and MAML-1 complexation do not detectably alter the DNA binding specificity of the transcription factor CSL. PLoS One 5: e15034. doi: 10.1371/journal.pone.0015034 PMID: 21124806
-
(2010)
PLoS One
, vol.5
, pp. e15034
-
-
Del Bianco, C.1
Vedenko, A.2
Choi, S.H.3
Berger, M.F.4
Shokri, L.5
Bulyk, M.L.6
-
58
-
-
80051996560
-
Complex formation, phosphorylation, and localization of protein kinase A of Schizosaccharomyces pombe upon glucose starvation
-
PMID: 21869531
-
Gupta DR, Paul SK, Oowatari Y, Matsuo Y, Kawamukai M (2011) Complex formation, phosphorylation, and localization of protein kinase A of Schizosaccharomyces pombe upon glucose starvation. Biosci Biotechnol Biochem 75: 1456-1465. doi: 10.1271/bbb.110125 PMID: 21869531
-
(2011)
Biosci Biotechnol Biochem
, vol.75
, pp. 1456-1465
-
-
Gupta, D.R.1
Paul, S.K.2
Oowatari, Y.3
Matsuo, Y.4
Kawamukai, M.5
-
59
-
-
0029012096
-
Sck1, a high copy number suppressor of defects in the cAMP-dependent protein kinase pathway in fission yeast, encodes a protein homologous to the Saccharomyces cerevisiae SCH9 kinase
-
PMID: 7498728
-
Jin M, Fujita M, Culley BM, Apolinario E, Yamamoto M, Maundrell K, et al. (1995) sck1, a high copy number suppressor of defects in the cAMP-dependent protein kinase pathway in fission yeast, encodes a protein homologous to the Saccharomyces cerevisiae SCH9 kinase. Genetics 140: 457-467. PMID: 7498728
-
(1995)
Genetics
, vol.140
, pp. 457-467
-
-
Jin, M.1
Fujita, M.2
Culley, B.M.3
Apolinario, E.4
Yamamoto, M.5
Maundrell, K.6
-
60
-
-
47649125318
-
Tuning gene expression to changing environments: From rapid responses to evolutionary adaptation
-
PMID: 18591982
-
López-Maury L, Marguerat S, Bähler J (2008) Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet 9: 583-593. doi: 10.1038/nrg2398 PMID: 18591982
-
(2008)
Nat Rev Genet
, vol.9
, pp. 583-593
-
-
López-Maury, L.1
Marguerat, S.2
Bähler, J.3
-
61
-
-
0029563651
-
Cell-cycle control linked to extracellular environment by MAP kinase pathway in fission yeast
-
PMID: 7501024
-
Shiozaki K, Russell P (1995) Cell-cycle control linked to extracellular environment by MAP kinase pathway in fission yeast. Nature 378: 739-743. doi: 10.1038/378739a0 PMID: 7501024
-
(1995)
Nature
, vol.378
, pp. 739-743
-
-
Shiozaki, K.1
Russell, P.2
-
62
-
-
0028235768
-
Cloning of the pka1 gene encoding the catalytic subunit of the cAMP-dependent protein kinase in Schizosaccharomyces pombe
-
PMID: 8144551
-
Maeda T, Watanabe Y, Kunitomo H, Yamamoto M (1994) Cloning of the pka1 gene encoding the catalytic subunit of the cAMP-dependent protein kinase in Schizosaccharomyces pombe. J Biol Chem 269: 9632-9637. PMID: 8144551
-
(1994)
J Biol Chem
, vol.269
, pp. 9632-9637
-
-
Maeda, T.1
Watanabe, Y.2
Kunitomo, H.3
Yamamoto, M.4
-
63
-
-
0027316991
-
Six git genes encode a glucose-induced adenylate cyclase activation pathway in the fission yeast Schizosaccharomyces pombe
-
PMID: 8227198
-
Byrne SM, Hoffman CS (1993) Six git genes encode a glucose-induced adenylate cyclase activation pathway in the fission yeast Schizosaccharomyces pombe. J Cell Sci 105 (Pt 4: 1095-1100. PMID: 8227198
-
(1993)
J Cell Sci
, vol.105
, pp. 1095-1100
-
-
Byrne, S.M.1
Hoffman, C.S.2
-
64
-
-
10944238742
-
Atf1-Pcr1-M26 complex links stressactivated MAPK and cAMP-dependent protein kinase pathways via chromatin remodeling of cgs2+
-
PMID: 15448137
-
Davidson MK, Shandilya HK, Hirota K, Ohta K, Wahls WP (2004) Atf1-Pcr1-M26 complex links stressactivated MAPK and cAMP-dependent protein kinase pathways via chromatin remodeling of cgs2+. J Biol Chem 279: 50857-50863. doi: 10.1074/jbc.M409079200 PMID: 15448137
-
(2004)
J Biol Chem
, vol.279
, pp. 50857-50863
-
-
Davidson, M.K.1
Shandilya, H.K.2
Hirota, K.3
Ohta, K.4
Wahls, W.P.5
-
65
-
-
79958117256
-
MEME-ChIP: Motif analysis of large DNA datasets
-
PMID: 21486936
-
Machanick P, Bailey TL (2011) MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics 27: 1696-1697. doi: 10.1093/bioinformatics/btr189 PMID: 21486936
-
(2011)
Bioinformatics
, vol.27
, pp. 1696-1697
-
-
Machanick, P.1
Bailey, T.L.2
-
66
-
-
84893477054
-
Dividing cells regulate their lipid composition and localization
-
PMID: 24462247
-
Atilla-Gokcumen GE, Muro E, Relat-Goberna J, Sasse S, Bedigian A, Coughlin ML, et al. (2014) Dividing cells regulate their lipid composition and localization. Cell 156: 428-439. doi: 10.1016/j.cell.2013. 12.015 PMID: 24462247
-
(2014)
Cell
, vol.156
, pp. 428-439
-
-
Atilla-Gokcumen, G.E.1
Muro, E.2
Relat-Goberna, J.3
Sasse, S.4
Bedigian, A.5
Coughlin, M.L.6
-
67
-
-
0029818264
-
Aberrant mitosis in fission yeast mutants defective in fatty acid synthetase and acetyl CoA carboxylase
-
PMID: 8769419
-
Saitoh S, Takahashi K, Nabeshima K, Yamashita Y, Nakaseko Y, Hirata A, et al. (1996) Aberrant mitosis in fission yeast mutants defective in fatty acid synthetase and acetyl CoA carboxylase. J Cell Biol 134: 949-961. PMID: 8769419
-
(1996)
J Cell Biol
, vol.134
, pp. 949-961
-
-
Saitoh, S.1
Takahashi, K.2
Nabeshima, K.3
Yamashita, Y.4
Nakaseko, Y.5
Hirata, A.6
|