메뉴 건너뛰기




Volumn 41, Issue 6, 2013, Pages 1696-1700

Systematic genetic analysis of transcription factors to map the fission yeast transcription-regulatory network

Author keywords

Fission yeast; Functional genomics; Schizosaccharomyces pombe; Transcription factor; Transcriptionalregulatory network

Indexed keywords

RNA POLYMERASE; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 84887870649     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST20130224     Document Type: Conference Paper
Times cited : (6)

References (40)
  • 3
    • 38549146907 scopus 로고    scopus 로고
    • DBD - Taxonomically broad transcription factor predictions: New content and functionality
    • Wilson, D., Charoensawan, V., Kummerfeld, S.K. and Teichmann, S.A. (2008) DBD - taxonomically broad transcription factor predictions: new content and functionality. Nucleic Acids Res. 36, D88-D92
    • (2008) Nucleic Acids Res , vol.36
    • Wilson, D.1    Charoensawan, V.2    Kummerfeld, S.K.3    Teichmann, S.A.4
  • 4
    • 0037177567 scopus 로고    scopus 로고
    • Transcription: Of chips and ChIPs
    • Shannon, M.F. and Rao, S. (2002) Transcription: of chips and ChIPs. Science 296, 666-669
    • (2002) Science , vol.296 , pp. 666-669
    • Shannon, M.F.1    Rao, S.2
  • 5
    • 4444227630 scopus 로고    scopus 로고
    • Genomic approaches that aid in the identification of transcription factor target genes
    • Kirmizis, A. and Farnham, P.J. (2004) Genomic approaches that aid in the identification of transcription factor target genes. Exp. Biol. Med. 229, 705-721
    • (2004) Exp. Biol. Med. , vol.229 , pp. 705-721
    • Kirmizis, A.1    Farnham, P.J.2
  • 6
    • 7744225947 scopus 로고    scopus 로고
    • Transcriptional networks: Reverse-engineering gene regulation on a global scale
    • Chua, G., Robinson, M.D., Morris, Q. and Hughes, T.R. (2004) Transcriptional networks: reverse-engineering gene regulation on a global scale. Curr. Opin. Microbiol. 7, 638-646
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 638-646
    • Chua, G.1    Robinson, M.D.2    Morris, Q.3    Hughes, T.R.4
  • 7
    • 84881058141 scopus 로고    scopus 로고
    • Functional characterization of fission yeast transcription factors by overexpression analysis
    • Vachon, L., Wood, J., Kwon, E.J., Laderoute, A., Chatfield-Reed, K., Karagiannis, J. and Chua, G. (2013) Functional characterization of fission yeast transcription factors by overexpression analysis. Genetics 194, 873-884
    • (2013) Genetics , vol.194 , pp. 873-884
    • Vachon, L.1    Wood, J.2    Kwon, E.J.3    Laderoute, A.4    Chatfield-Reed, K.5    Karagiannis, J.6    Chua, G.7
  • 19
    • 14844303289 scopus 로고    scopus 로고
    • SCFPof1-ubiquitin and its target Zip1 transcription factor mediate cadmium response in fission yeast
    • Harrison, C., Katayama, S., Dhut, S., Chen, D., Jones, N., Bähler, J. and Toda, T. (2005) SCFPof1-ubiquitin and its target Zip1 transcription factor mediate cadmium response in fission yeast. EMBO J. 24, 599-610
    • (2005) EMBO J , vol.24 , pp. 599-610
    • Harrison, C.1    Katayama, S.2    Dhut, S.3    Chen, D.4    Jones, N.5    Bähler, J.6    Toda, T.7
  • 20
    • 47049117044 scopus 로고    scopus 로고
    • Transcription factors Pcr1 and Atf1 have distinct roles in stress- and Sty1-dependent gene regulation
    • Sanso, M., Gogol, M., Ayte, J., Seidel, C. and Hidalgo, E. (2008) Transcription factors Pcr1 and Atf1 have distinct roles in stress- and Sty1-dependent gene regulation. Eukaryotic Cell 7, 826-835
    • (2008) Eukaryotic Cell , vol.7 , pp. 826-835
    • Sanso, M.1    Gogol, M.2    Ayte, J.3    Seidel, C.4    Hidalgo, E.5
  • 23
    • 79951470837 scopus 로고    scopus 로고
    • Systematic screen of Schizosaccharomyces pombe deletion collection uncovers parallel evolution of the phosphate signal transduction pathway in yeasts
    • Henry, T.C., Power, J.E., Kerwin, C.L., Mohammed, A., Weissman, J.S., Cameron, D.M. and Wykoff, D.D. (2011) Systematic screen of Schizosaccharomyces pombe deletion collection uncovers parallel evolution of the phosphate signal transduction pathway in yeasts. Eukaryotic Cell 10, 198-206
    • (2011) Eukaryotic Cell , vol.10 , pp. 198-206
    • Henry, T.C.1    Power, J.E.2    Kerwin, C.L.3    Mohammed, A.4    Weissman, J.S.5    Cameron, D.M.6    Wykoff, D.D.7
  • 24
    • 0031954630 scopus 로고    scopus 로고
    • The Schizosaccharomyces pombe mei4+ gene encodes a meiosis-specific transcription factor containing a forkhead DNA-binding domain
    • Horie, S., Watanabe, Y., Tanaka, K., Nishiwaki, S., Fujioka, H., Abe, H., Yamamoto, M. and Shimoda, C. (1998) The Schizosaccharomyces pombe mei4+ gene encodes a meiosis-specific transcription factor containing a forkhead DNA-binding domain. Mol. Cell. Biol. 18, 2118-2129
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 2118-2129
    • Horie, S.1    Watanabe, Y.2    Tanaka, K.3    Nishiwaki, S.4    Fujioka, H.5    Abe, H.6    Yamamoto, M.7    Shimoda, C.8
  • 25
    • 0036729529 scopus 로고    scopus 로고
    • The transcriptional program of meiosis and sporulation in fission yeast
    • Mata, J., Lyne, R., Burns, G. and Bähler, J. (2002) The transcriptional program of meiosis and sporulation in fission yeast. Nat. Genet. 32, 143-147
    • (2002) Nat. Genet. , vol.32 , pp. 143-147
    • Mata, J.1    Lyne, R.2    Burns, G.3    Bähler, J.4
  • 26
    • 39049127908 scopus 로고    scopus 로고
    • Transcriptional regulatory network for sexual differentiation in fission yeast
    • Mata, J., Wilbrey, A. and Bähler, J. (2007) Transcriptional regulatory network for sexual differentiation in fission yeast. Genome Biol. 8, R217
    • (2007) Genome Biol , vol.8
    • Mata, J.1    Wilbrey, A.2    Bähler, J.3
  • 27
    • 17644401005 scopus 로고    scopus 로고
    • SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast
    • Hughes, A.L., Todd, B.L. and Espenshade, P.J. (2005) SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast. Cell 120, 831-842
    • (2005) Cell , vol.120 , pp. 831-842
    • Hughes, A.L.1    Todd, B.L.2    Espenshade, P.J.3
  • 28
    • 34548827087 scopus 로고    scopus 로고
    • Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: A comparative study
    • Rustici, G., van Bakel, H., Lackner, D.H., Holstege, F.C., Wijmenga, C., Bähler, J. and Brazma, A. (2007) Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study. Genome Biol. 8, R73
    • (2007) Genome Biol , vol.8
    • Rustici, G.1    Van Bakel, H.2    Lackner, D.H.3    Holstege, F.C.4    Wijmenga, C.5    Bähler, J.6    Brazma, A.7
  • 29
    • 0035805543 scopus 로고    scopus 로고
    • The fission yeast copper-sensing transcription factor Cuf1 regulates the copper transporter gene expression through an Ace1/Amt1-like recognition sequence
    • Beaudoin, J. and Labbé, S. (2001) The fission yeast copper-sensing transcription factor Cuf1 regulates the copper transporter gene expression through an Ace1/Amt1-like recognition sequence. J. Biol. Chem. 276, 15472-15480
    • (2001) J. Biol. Chem. , vol.276 , pp. 15472-15480
    • Beaudoin, J.1    Labbé, S.2
  • 30
    • 0037151108 scopus 로고    scopus 로고
    • Fep1, an iron sensor regulating iron transporter gene expression in Schizosaccharomyces pombe
    • Pelletier, B., Beaudoin, J., Mukai, Y. and Labbé, S. (2002) Fep1, an iron sensor regulating iron transporter gene expression in Schizosaccharomyces pombe. J. Biol. Chem. 277, 22950-22958
    • (2002) J. Biol. Chem. , vol.277 , pp. 22950-22958
    • Pelletier, B.1    Beaudoin, J.2    Mukai, Y.3    Labbé, S.4
  • 32
    • 67849095319 scopus 로고    scopus 로고
    • Identification of transcription factor targets by phenotypic activation and microarray expression profiling in yeast
    • Chua, G. (2009) Identification of transcription factor targets by phenotypic activation and microarray expression profiling in yeast. Methods Mol. Biol. 548, 19-35
    • (2009) Methods Mol. Biol. , vol.548 , pp. 19-35
    • Chua, G.1
  • 33
    • 84872021865 scopus 로고    scopus 로고
    • Deciphering the transcriptional-regulatory network of flocculation in Schizosaccharomyces pombe
    • Kwon, E.J., Laderoute, A., Chatfield-Reed, K., Vachon, L., Karagiannis, J. and Chua, G. (2012) Deciphering the transcriptional-regulatory network of flocculation in Schizosaccharomyces pombe. PLoS Genet. 8, e1003104
    • (2012) PLoS Genet , vol.8
    • Kwon, E.J.1    Laderoute, A.2    Chatfield-Reed, K.3    Vachon, L.4    Karagiannis, J.5    Chua, G.6
  • 34
    • 84876082443 scopus 로고    scopus 로고
    • The zinc finger protein Gsf1 regulates Gsf2-dependent flocculation in fission yeast
    • Matsuzawa, T., Kageyama, Y., Ooishi, K., Kawamukai, M. and Takegawa, K. (2013) The zinc finger protein Gsf1 regulates Gsf2-dependent flocculation in fission yeast. FEMS Yeast Res. 13, 259-66
    • (2013) FEMS Yeast Res , vol.13 , pp. 259-266
    • Matsuzawa, T.1    Kageyama, Y.2    Ooishi, K.3    Kawamukai, M.4    Takegawa, K.5
  • 35
    • 33750282783 scopus 로고    scopus 로고
    • Global roles of Ste11p, cell type, and pheromone in the control of gene expression during early sexual differentiation in fission yeast
    • Mata, J. and Bähler, J. (2006) Global roles of Ste11p, cell type, and pheromone in the control of gene expression during early sexual differentiation in fission yeast. Proc. Natl. Acad. Sci. U.S.A. 103, 15517-15522
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 15517-15522
    • Mata, J.1    Bähler, J.2
  • 36
    • 14044279884 scopus 로고    scopus 로고
    • Constitutive activation of the fission yeast pheromone-responsive pathway induces ectopic meiosis and reveals ste11 as a mitogen-activated protein kinase target
    • Kjaerulff, S., Lautrup-Larsen, I., Truelsen, S., Pedersen, M. and Nielsen, O. (2005) Constitutive activation of the fission yeast pheromone-responsive pathway induces ectopic meiosis and reveals ste11 as a mitogen-activated protein kinase target. Mol. Cell. Biol. 25, 2045-2059
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 2045-2059
    • Kjaerulff, S.1    Lautrup-Larsen, I.2    Truelsen, S.3    Pedersen, M.4    Nielsen, O.5
  • 37
    • 0032523783 scopus 로고    scopus 로고
    • Regulation of the fission yeast transcription factor Pap1 by oxidative stress: Requirement for the nuclear export factor Crm1 (exportin) and the stress-activated MAP kinase Sty1/Spc1
    • Toone, W.M., Kuge, S., Samuels, M., Morgan, B.A., Toda, T. and Jones, N. (1998) Regulation of the fission yeast transcription factor Pap1 by oxidative stress: requirement for the nuclear export factor Crm1 (exportin) and the stress-activated MAP kinase Sty1/Spc1. Genes Dev. 12, 1453-1463
    • (1998) Genes Dev , vol.12 , pp. 1453-1463
    • Toone, W.M.1    Kuge, S.2    Samuels, M.3    Morgan, B.A.4    Toda, T.5    Jones, N.6
  • 38
    • 0023805741 scopus 로고
    • Negative effect of the transcriptional activator GAL4
    • Gill, G. and Ptashne, M. (1988) Negative effect of the transcriptional activator GAL4. Nature 334, 721-724
    • (1988) Nature , vol.334 , pp. 721-724
    • Gill, G.1    Ptashne, M.2
  • 39
    • 0028842910 scopus 로고
    • Reversal of in vitro p53 squelching by both TFIIB and TFIID
    • Liu, X. and Berk, A.J. (1995) Reversal of in vitro p53 squelching by both TFIIB and TFIID. Mol. Cell. Biol. 15, 6474-6478
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 6474-6478
    • Liu, X.1    Berk, A.J.2
  • 40
    • 0029055228 scopus 로고
    • Transcriptional interference caused by GCN4 overexpression reveals multiple interactions mediating transcriptional activation
    • Tavernarakis, N. and Thireos, G. (1995) Transcriptional interference caused by GCN4 overexpression reveals multiple interactions mediating transcriptional activation. Mol. Gen. Genet. 247, 571-578
    • (1995) Mol. Gen. Genet. , vol.247 , pp. 571-578
    • Tavernarakis, N.1    Thireos, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.