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Volumn 64, Issue 5, 2015, Pages 709-726

Impacts of terraces on phylogenetic inference

Author keywords

Bootstrap; Partitioned model; Phylogenetics; Posterior probability; Terrace

Indexed keywords

BIOLOGICAL MODEL; CLASSIFICATION; COMPUTER SIMULATION; PHYLOGENY; PROCEDURES; STANDARDS;

EID: 84946918783     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syv024     Document Type: Article
Times cited : (38)

References (83)
  • 1
    • 0001567207 scopus 로고
    • Inferring a tree from lowest common ancestors with an application to the optimization of relational expressions
    • Aho A., Sagiv Y., Szymanski T.G., Ullman J. 1981. Inferring a tree from lowest common ancestors with an application to the optimization of relational expressions. SIAM J. Comput. 10: 405-421.
    • (1981) SIAM J. Comput. , vol.10 , pp. 405-421
    • Aho, A.1    Sagiv, Y.2    Szymanski, T.G.3    Ullman, J.4
  • 3
    • 84863435149 scopus 로고    scopus 로고
    • Is your phylogeny informative? Measuring the power of comparative methods
    • Boettiger C., Coop G., Ralph P. 2012. Is your phylogeny informative? Measuring the power of comparative methods. Evolution 66: 2240-2251.
    • (2012) Evolution , vol.66 , pp. 2240-2251
    • Boettiger, C.1    Coop, G.2    Ralph, P.3
  • 6
    • 65349083699 scopus 로고    scopus 로고
    • Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis of angiosperms
    • Burleigh J.G., Hilu K.W., Soltis D.E. 2009. Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis of angiosperms. BMC Evol. Biol. 9. DOI: 10.1186/1471-2148-9-61.
    • (2009) BMC Evol. Biol. , vol.9
    • Burleigh, J.G.1    Hilu, K.W.2    Soltis, D.E.3
  • 8
    • 0030588055 scopus 로고    scopus 로고
    • Full reconstruction of Markov models on evolutionary trees: Identifiability and consistency
    • Chang J. 1996. Full reconstruction of Markov models on evolutionary trees: Identifiability and consistency. Math. Biosci. 137: 51-73.
    • (1996) Math. Biosci. , vol.137 , pp. 51-73
    • Chang, J.1
  • 11
    • 21844513787 scopus 로고
    • An efficient algorithm for supertrees
    • Constantinescu M. 1995. An efficient algorithm for supertrees. J. Classif. 12: 101-112.
    • (1995) J. Classif. , vol.12 , pp. 101-112
    • Constantinescu, M.1
  • 14
    • 84856214128 scopus 로고    scopus 로고
    • Impact of missing data, gene choice, and taxon sampling on phylogenetic reconstruction: The Caryophyllales (Angiosperms
    • Crawley S.S., Hilu K.W. 2012. Impact of missing data, gene choice, and taxon sampling on phylogenetic reconstruction: The Caryophyllales (Angiosperms). Plant Syst. Evol. 298: 297-312.
    • (2012) Plant Syst. Evol. , vol.298 , pp. 297-312
    • Crawley, S.S.1    Hilu, K.W.2
  • 16
    • 84873504852 scopus 로고    scopus 로고
    • Exploring power and parameter estimation of the BiSSE method for analyzing species diversification
    • Davis M.P., Midford P.E., Maddison W. 2013. Exploring power and parameter estimation of the BiSSE method for analyzing species diversification. BMC Evol. Biol. 13: 11.
    • (2013) BMC Evol. Biol. , vol.13 , pp. 11
    • Davis, M.P.1    Midford, P.E.2    Maddison, W.3
  • 17
    • 0000713911 scopus 로고    scopus 로고
    • Bootstrap confidence intervals
    • DiCiccio T., Efron B. 1996. Bootstrap confidence intervals. Stat. Sci. 11: 189-228.
    • (1996) Stat. Sci. , vol.11 , pp. 189-228
    • DiCiccio, T.1    Efron, B.2
  • 19
    • 84862178988 scopus 로고    scopus 로고
    • A glimpse on the pattern of rodent diversification: A phylogenetic approach
    • Fabre P.-H., Hautier L., Dimitrov D., Douzery E.J.P. 2012. A glimpse on the pattern of rodent diversification: A phylogenetic approach. BMC Evol. Biol. 12.
    • (2012) BMC Evol. Biol. , vol.12
    • Fabre, P.-H.1    Hautier, L.2    Dimitrov, D.3    Douzery, E.J.P.4
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 21
    • 84870546247 scopus 로고    scopus 로고
    • Tempo and mode in plant breeding system evolution
    • Goldberg E.E., Igic B. 2012. Tempo and mode in plant breeding system evolution. Evolution 66: 3701-3709.
    • (2012) Evolution , vol.66 , pp. 3701-3709
    • Goldberg, E.E.1    Igic, B.2
  • 22
    • 84908021809 scopus 로고    scopus 로고
    • Hide and vanish: Data sets where the most parsimonious tree is known but hard to find, and their implications for tree search methods
    • Goloboff P. 2014. Hide and vanish: Data sets where the most parsimonious tree is known but hard to find, and their implications for tree search methods. Mol. Phyl. Evol 79: 118-131.
    • (2014) Mol. Phyl. Evol , vol.79 , pp. 118-131
    • Goloboff, P.1
  • 23
    • 0026296265 scopus 로고
    • Homoplasy and the choice among cladograms
    • Goloboff P.A. 1991. Homoplasy and the choice among cladograms. Cladistics 7: 215-232.
    • (1991) Cladistics , vol.7 , pp. 215-232
    • Goloboff, P.A.1
  • 24
    • 0000803938 scopus 로고
    • Consensus supertrees: The synthesis of rooted trees containing overlapping sets of labeled leaves
    • Gordon A.D. 1986. Consensus supertrees: The synthesis of rooted trees containing overlapping sets of labeled leaves. J. Classif. 3: 31-39.
    • (1986) J. Classif. , vol.3 , pp. 31-39
    • Gordon, A.D.1
  • 25
    • 84865291420 scopus 로고    scopus 로고
    • Phylogenomic resolution of paleozoic divergences in Harvestmen (Arachnida, Opiliones) via analysis of next-generation transcriptome data
    • Hedin M., Starrett J., Akhter S., Schoenhofer A.L., Shultz J.W. 2012. Phylogenomic resolution of paleozoic divergences in Harvestmen (Arachnida, Opiliones) via analysis of next-generation transcriptome data. PLOS One 7.
    • (2012) PLOS One , vol.7
    • Hedin, M.1    Starrett, J.2    Akhter, S.3    Schoenhofer, A.L.4    Shultz, J.W.5
  • 27
    • 79961133759 scopus 로고    scopus 로고
    • Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: Yeasts revisited
    • Hess J., Goldman N. 2011. Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: Yeasts revisited. PLOS One 6.
    • (2011) PLOS One , vol.6
    • Hess, J.1    Goldman, N.2
  • 28
    • 84873597223 scopus 로고    scopus 로고
    • Using supermatrices for phylogenetic inquiry: An example using the sedges
    • Hinchliff C.E., Roalson E.H. 2013. Using supermatrices for phylogenetic inquiry: An example using the sedges. Syst. Biol. 62: 205-219.
    • (2013) Syst. Biol. , vol.62 , pp. 205-219
    • Hinchliff, C.E.1    Roalson, E.H.2
  • 29
    • 83255165385 scopus 로고    scopus 로고
    • Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees
    • Izquierdo-Carrasco F., Smith S.A., Stamatakis A. 2011. Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees. BMC Bioinf. 12. DOI: 10.1186/1471-2105-12-470.
    • (2011) BMC Bioinf. , vol.12
    • Izquierdo-Carrasco, F.1    Smith, S.A.2    Stamatakis, A.3
  • 30
    • 0036554650 scopus 로고    scopus 로고
    • Fragmentary taxa, missing data, and ambiguity: Mistaken assumptions and conclusions
    • Kearney M. 2002. Fragmentary taxa, missing data, and ambiguity: Mistaken assumptions and conclusions. Syst. Biol. 51: 369-381.
    • (2002) Syst. Biol. , vol.51 , pp. 369-381
    • Kearney, M.1
  • 31
    • 77949525939 scopus 로고    scopus 로고
    • Long-branch attraction bias and inconsistency in Bayesian phylogenetics
    • Kolaczkowski B., Thornton J.W. 2009. Long-branch attraction bias and inconsistency in Bayesian phylogenetics. Plos One 4.
    • (2009) Plos One , vol.4
    • Kolaczkowski, B.1    Thornton, J.W.2
  • 32
    • 67449163699 scopus 로고    scopus 로고
    • The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
    • Lemmon A.R., Brown J.M., Stanger-Hall K., Lemmon E.M. 2009. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Syst. Biol. 58: 130-145.
    • (2009) Syst. Biol. , vol.58 , pp. 130-145
    • Lemmon, A.R.1    Brown, J.M.2    Stanger-Hall, K.3    Lemmon, E.M.4
  • 34
    • 47249090871 scopus 로고    scopus 로고
    • Optimal data partitioning and a test case for ray-finned fishes (actinopterygii) based on ten nuclear loci
    • Li C.H., Lu G.Q., Orti G. 2008. Optimal data partitioning and a test case for ray-finned fishes (actinopterygii) based on ten nuclear loci. Syst. Biol. 57: 519-539.
    • (2008) Syst. Biol. , vol.57 , pp. 519-539
    • Li, C.H.1    Lu, G.Q.2    Orti, G.3
  • 35
    • 81455140612 scopus 로고    scopus 로고
    • RAxML and FastTree: Comparing two methods for large-scale maximum likelihood phylogeny estimation
    • Liu K., Linder C.R.,WarnowT. 2012. RAxML and FastTree: Comparing two methods for large-scale maximum likelihood phylogeny estimation. PLOS One 6.
    • (2012) PLOS One , vol.6
    • Liu, K.1    Linder C.R.WarnowT.2
  • 36
    • 84960569058 scopus 로고
    • The discovery and importance of multiple islands of most-parsimonious trees
    • Maddison D.R. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Syst. Zool. 40: 315-328.
    • (1991) Syst. Zool. , vol.40 , pp. 315-328
    • Maddison, D.R.1
  • 37
    • 0024940670 scopus 로고
    • Reconstructing character evolution on polytomous cladograms
    • MaddisonW. 1989. Reconstructing character evolution on polytomous cladograms. Cladistics 5: 365-377.
    • (1989) Cladistics , vol.5 , pp. 365-377
    • Maddison, W.1
  • 39
    • 84965149936 scopus 로고    scopus 로고
    • Phylogenetics and the human microbiome
    • Matsen F.A. 2015. Phylogenetics and the human microbiome. Syst. Biol. 64: E26-e41.
    • (2015) Syst. Biol. , vol.64 , pp. e26-e41
    • Matsen, F.A.1
  • 40
    • 0000148103 scopus 로고    scopus 로고
    • Retractions of finite distance functions onto tree metrics
    • Moulton V., Steel M.A. 1999. Retractions of finite distance functions onto tree metrics. Discr. Appl. Math. 91: 215-233.
    • (1999) Discr. Appl. Math. , vol.91 , pp. 215-233
    • Moulton, V.1    Steel, M.A.2
  • 41
    • 57149106289 scopus 로고    scopus 로고
    • Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo
    • Pagel M., Meade A. 2008. Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo. Philos. T. R. Soc. B. 363: 3955-3964.
    • (2008) Philos. T. R. Soc. B. , vol.363 , pp. 3955-3964
    • Pagel, M.1    Meade, A.2
  • 42
    • 80052717965 scopus 로고    scopus 로고
    • A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians
    • Pyron R.A., Wiens J.J. 2011. A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians. Mol. Phylogenet. Evol. 61: 543-583.
    • (2011) Mol. Phylogenet. Evol. , vol.61 , pp. 543-583
    • Pyron, R.A.1    Wiens, J.J.2
  • 44
    • 0030928378 scopus 로고    scopus 로고
    • Seq-gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut A., Grassly N.C. 1997. Seq-gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Cabios 13: 235-238.
    • (1997) Cabios , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 45
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson D.F., Foulds L.R. 1981. Comparison of phylogenetic trees. Math. Biosci. 53: 131-147.
    • (1981) Math. Biosci. , vol.53 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 47
    • 84871842306 scopus 로고    scopus 로고
    • Impact of missing data on phylogenies inferred from empirical phylogenomic datasets
    • Roure B., Baurain D., Philippe H. 2013. Impact of missing data on phylogenies inferred from empirical phylogenomic datasets. Mol. Biol. Evol. 30: 197-214.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 197-214
    • Roure, B.1    Baurain, D.2    Philippe, H.3
  • 48
    • 84904747681 scopus 로고    scopus 로고
    • Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeatlacking clade of legumes
    • Sabir J., Schwarz E., Ellison N., Zhang J., Baeshen N.A., Mutwakil M., Jansen R., Ruhlman T. 2014. Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeatlacking clade of legumes. Plant Biotech. J. 12: 743-754.
    • (2014) Plant Biotech. J. , vol.12 , pp. 743-754
    • Sabir, J.1    Schwarz, E.2    Ellison, N.3    Zhang, J.4    Baeshen, N.A.5    Mutwakil, M.6    Jansen, R.7    Ruhlman, T.8
  • 49
    • 84878113118 scopus 로고    scopus 로고
    • Inferring ancient divergences requires genes with strong phylogenetic signals
    • Salichos L., RokasA. 2013. Inferring ancient divergences requires genes with strong phylogenetic signals. Nature 497: 327-331.
    • (2013) Nature , vol.497 , pp. 327-331
    • Salichos, L.1    Rokas, A.2
  • 50
    • 0035527401 scopus 로고    scopus 로고
    • Complexity of the likelihood surface for a large DNA dataset
    • Salter L.A. 2001. Complexity of the likelihood surface for a large DNA dataset. Syst. Biol. 50: 970-978.
    • (2001) Syst. Biol. , vol.50 , pp. 970-978
    • Salter, L.A.1
  • 51
    • 34548403121 scopus 로고    scopus 로고
    • Construction and annotation of large phylogenetic trees
    • Sanderson M.J. 2007. Construction and annotation of large phylogenetic trees. Aust. Syst. Bot. 20: 287-301.
    • (2007) Aust. Syst. Bot. , vol.20 , pp. 287-301
    • Sanderson, M.J.1
  • 52
    • 46849087728 scopus 로고    scopus 로고
    • Phylogenetic signal in the eukaryotic tree of life
    • Sanderson M.J. 2008. Phylogenetic signal in the eukaryotic tree of life. Science 321: 121-123.
    • (2008) Science , vol.321 , pp. 121-123
    • Sanderson, M.J.1
  • 53
    • 77952490857 scopus 로고    scopus 로고
    • Phylogenomics with incomplete taxon coverage: The limits to inference
    • Sanderson M.J., McMahon M.M., Steel M. 2010. Phylogenomics with incomplete taxon coverage: The limits to inference. BMC Evol. Biol. 10: 155.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 155
    • Sanderson, M.J.1    McMahon, M.M.2    Steel, M.3
  • 54
    • 79960670940 scopus 로고    scopus 로고
    • Terraces in phylogenetic tree space
    • Sanderson M.J., McMahon M.M., Steel M. 2011. Terraces in phylogenetic tree space. Science 333: 448-450.
    • (2011) Science , vol.333 , pp. 448-450
    • Sanderson, M.J.1    McMahon, M.M.2    Steel, M.3
  • 55
    • 84867977644 scopus 로고    scopus 로고
    • Reconstructing minimal rooted trees
    • Semple C. 2003. Reconstructing minimal rooted trees. Discr. Appl. Math. 127: 489-503.
    • (2003) Discr. Appl. Math. , vol.127 , pp. 489-503
    • Semple, C.1
  • 58
    • 84858080561 scopus 로고    scopus 로고
    • Misleading results of likelihood-based phylogenetic analyses in the presence of missing data
    • Simmons M.P. 2012a. Misleading results of likelihood-based phylogenetic analyses in the presence of missing data. Cladistics 28: 208-222.
    • (2012) Cladistics , vol.28 , pp. 208-222
    • Simmons, M.P.1
  • 59
    • 83655167077 scopus 로고    scopus 로고
    • Radical instability and spurious branch support by likelihood when applied to matrices with non- random distributions of missing data
    • Simmons M.P. 2012b. Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data. Mol. Phylogenet. Evol. 62: 472-484.
    • (2012) Mol. Phylogenet. Evol. , vol.62 , pp. 472-484
    • Simmons, M.P.1
  • 60
    • 84894609144 scopus 로고    scopus 로고
    • Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices
    • Simmons M.P. 2014. Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices. Mol. Phylogenet. Evol. 74: 1-14.
    • (2014) Mol. Phylogenet. Evol. , vol.74 , pp. 1-14
    • Simmons, M.P.1
  • 61
    • 79960573402 scopus 로고    scopus 로고
    • Spurious 99% bootstrap and jackknife support for unsupported clades
    • Simmons M.P., Freudenstein J.V. 2011. Spurious 99% bootstrap and jackknife support for unsupported clades. Mol. Phylogenet. Evol. 61: 177-191.
    • (2011) Mol. Phylogenet. Evol. , vol.61 , pp. 177-191
    • Simmons, M.P.1    Freudenstein, J.V.2
  • 62
    • 84880157756 scopus 로고    scopus 로고
    • An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters
    • Simmons M.P., Goloboff P.A. 2013. An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters. Mol. Phylogenet. Evol. 69: 265-75.
    • (2013) Mol. Phylogenet. Evol. , vol.69 , pp. 265-275
    • Simmons, M.P.1    Goloboff, P.A.2
  • 63
    • 84904622865 scopus 로고    scopus 로고
    • Dubious resolution and support from published sparse supermatrices: The importance of thorough tree searches
    • Simmons M.P., Goloboff P.A. 2014. Dubious resolution and support from published sparse supermatrices: The importance of thorough tree searches. Mol. Phylogenet. Evol. 78: 334-348.
    • (2014) Mol. Phylogenet. Evol. , vol.78 , pp. 334-348
    • Simmons, M.P.1    Goloboff, P.A.2
  • 64
    • 84965135623 scopus 로고    scopus 로고
    • Concatabominations: Identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction
    • Siu-Ting K., Pisani D., Creevey C.J., Wilkinson M. 2014. Concatabominations: Identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction. Syst. Biol. 64: 137-143.
    • (2014) Syst. Biol. , vol.64 , pp. 137-143
    • Siu-Ting, K.1    Pisani, D.2    Creevey, C.J.3    Wilkinson, M.4
  • 65
    • 60849123934 scopus 로고    scopus 로고
    • Mega-phylogeny approach for comparative biology: An alternative to supertree and supermatrix approaches
    • Smith S.A., Beaulieu J.M., Donoghue M.J. 2009. Mega-phylogeny approach for comparative biology: An alternative to supertree and supermatrix approaches. BMC Evol. Biol. 9.
    • (2009) BMC Evol. Biol. , vol.9
    • Smith, S.A.1    Beaulieu, J.M.2    Donoghue, M.J.3
  • 66
    • 85006651318 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. Stamatakis A., Alachiotis N. 2010. Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data
    • Stamatakis A. 2014. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. Stamatakis A., Alachiotis N. 2010. Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data. Bioinformatics 26: I132-i139.
    • (2014) Bioinformatics , vol.26 , pp. i132-i139
    • Stamatakis, A.1
  • 67
    • 52449147252 scopus 로고
    • The complexity of reconstructing trees from qualitative characters and subtrees
    • Steel M. 1992. The complexity of reconstructing trees from qualitative characters and subtrees. J. Classif. 9: 91-116.
    • (1992) J. Classif. , vol.9 , pp. 91-116
    • Steel, M.1
  • 68
    • 70350620991 scopus 로고    scopus 로고
    • Characterizing phylogenetically decisive taxon coverage
    • Steel M., Sanderson M.J. 2010. Characterizing phylogenetically decisive taxon coverage. Appl. Math. Lett. 23: 82-86.
    • (2010) Appl. Math. Lett. , vol.23 , pp. 82-86
    • Steel, M.1    Sanderson, M.J.2
  • 69
    • 57149094695 scopus 로고    scopus 로고
    • On the distributions of bootstrap support and posterior distributions for a star tree
    • Susko E. 2008. On the distributions of bootstrap support and posterior distributions for a star tree. Syst. Biol. 57: 602-612.
    • (2008) Syst. Biol. , vol.57 , pp. 602-612
    • Susko, E.1
  • 70
    • 67749122255 scopus 로고    scopus 로고
    • Bootstrap support is not first order correct
    • Susko E. 2009. Bootstrap support is not first order correct. Syst. Biol. 58: 211-233.
    • (2009) Syst. Biol. , vol.58 , pp. 211-233
    • Susko, E.1
  • 72
    • 79955163449 scopus 로고    scopus 로고
    • Re-evolution of lostmandibular teeth in frogs aftermore than 200 million years, and re-evaluating Dollo's law
    • Wiens J.J. 2011.Re-evolution of lostmandibular teeth in frogs aftermore than 200 million years, and re-evaluating Dollo's law. Evolution 65: 1283-1296.
    • (2011) Evolution , vol.65 , pp. 1283-1296
    • Wiens, J.J.1
  • 73
    • 80052006478 scopus 로고    scopus 로고
    • Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data
    • Wiens J.J., Morrill M.C. 2011. Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data. Syst. Biol. 60: 719-731.
    • (2011) Syst. Biol. , vol.60 , pp. 719-731
    • Wiens, J.J.1    Morrill, M.C.2
  • 74
    • 12044253960 scopus 로고
    • Common cladistic information and its consensus representation: Reduced adams and reduced cladistic consensus trees and profiles
    • Wilkinson M. 1994. Common cladistic information and its consensus representation: Reduced adams and reduced cladistic consensus trees and profiles. Syst. Biol. 43: 343-368.
    • (1994) Syst. Biol. , vol.43 , pp. 343-368
    • Wilkinson, M.1
  • 75
    • 0029498439 scopus 로고
    • Coping with abundant missing entries in phylogenetic inference using parsimony
    • Wilkinson M. 1995. Coping with abundant missing entries in phylogenetic inference using parsimony. Syst Biol. 44: 501-514.
    • (1995) Syst Biol. , vol.44 , pp. 501-514
    • Wilkinson, M.1
  • 76
    • 0043205924 scopus 로고    scopus 로고
    • Missing entries and multiple trees: Instability, relationships and support in parsimony analysis
    • Wilkinson M. 2003. Missing entries and multiple trees: Instability, relationships and support in parsimony analysis. J. Vert. Paleo. 23: 311-323.
    • (2003) J. Vert. Paleo. , vol.23 , pp. 311-323
    • Wilkinson, M.1
  • 77
    • 0344761871 scopus 로고    scopus 로고
    • Sphenodontid phylogeny and the problems of multiple trees
    • Wilkinson M., Benton M.J. 1996. Sphenodontid phylogeny and the problems of multiple trees. Philos. T. Roy. Soc. B. 351: 1-16.
    • (1996) Philos. T. Roy. Soc. B. , vol.351 , pp. 1-16
    • Wilkinson, M.1    Benton, M.J.2
  • 78
    • 85029048951 scopus 로고    scopus 로고
    • Supertree methods for building the tree of life: Divide-and-conquer approaches to large phylogenetic problems
    • In: Hodkinson T.R., Parnell J.A.N., editors London: CRC Press (Systematics Association Special Volume
    • Wilkinson M., Cotton J.A. 2006. Supertree methods for building the tree of life: Divide-and-conquer approaches to large phylogenetic problems. In: Hodkinson T.R., Parnell J.A.N., editors. Reconstructing the Tree of Life: Taxonomy and Systematics of Large and Species Rich Taxa. London: CRC Press (Systematics Association Special Volume), p. 61-75.
    • (2006) Reconstructing the Tree of Life: Taxonomy and Systematics of Large and Species Rich Taxa , pp. 61-75
    • Wilkinson, M.1    Cotton, J.A.2
  • 79
    • 84894052682 scopus 로고    scopus 로고
    • Phylogenomics and coalescent analyses resolve extant seed plant relationships
    • Xi Z.X., Rest J.S., Davis C.C. 2013. Phylogenomics and coalescent analyses resolve extant seed plant relationships.PLOSOne8: E80870.
    • (2013) PLOSOne , vol.8 , pp. e80870
    • Xi, Z.X.1    Rest, J.S.2    Davis, C.C.3
  • 80
    • 84893775904 scopus 로고    scopus 로고
    • Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance
    • Yu C., He R.L., Yau S.S.T. 2014. Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance. J. Theor. Biol. 348: 12-20.
    • (2014) J. Theor. Biol. , vol.348 , pp. 12-20
    • Yu, C.1    He, R.L.2    Yau, S.S.T.3
  • 83
    • 84906251283 scopus 로고    scopus 로고
    • Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
    • Zwickl D.J., Wing R., Stein J., Ware D., Sanderson M.J. 2014. Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3. Syst. Biol. 63: 645-659.
    • (2014) Syst. Biol. , vol.63 , pp. 645-659
    • Zwickl, D.J.1    Wing, R.2    Stein, J.3    Ware, D.4    Sanderson, M.J.5


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