-
1
-
-
0001567207
-
Inferring a tree from lowest common ancestors with an application to the optimization of relational expressions
-
Aho A., Sagiv Y., Szymanski T.G., Ullman J. 1981. Inferring a tree from lowest common ancestors with an application to the optimization of relational expressions. SIAM J. Comput. 10: 405-421.
-
(1981)
SIAM J. Comput.
, vol.10
, pp. 405-421
-
-
Aho, A.1
Sagiv, Y.2
Szymanski, T.G.3
Ullman, J.4
-
3
-
-
84863435149
-
Is your phylogeny informative? Measuring the power of comparative methods
-
Boettiger C., Coop G., Ralph P. 2012. Is your phylogeny informative? Measuring the power of comparative methods. Evolution 66: 2240-2251.
-
(2012)
Evolution
, vol.66
, pp. 2240-2251
-
-
Boettiger, C.1
Coop, G.2
Ralph, P.3
-
6
-
-
65349083699
-
Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis of angiosperms
-
Burleigh J.G., Hilu K.W., Soltis D.E. 2009. Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis of angiosperms. BMC Evol. Biol. 9. DOI: 10.1186/1471-2148-9-61.
-
(2009)
BMC Evol. Biol.
, vol.9
-
-
Burleigh, J.G.1
Hilu, K.W.2
Soltis, D.E.3
-
7
-
-
84860693904
-
Does phylogeny matter? Assessing the impact of phylogenetic information in ecological meta-analysis
-
Chamberlain S.A.,Hovick S.M., Dibble C.J., RasmussenN.L.,Van Allen B.G., Maitner B.S., Ahern J.R., Bell-Dereske L.P., Roy C.L., Meza- Lopez M., Carrillo J., Siemann E., Lajeunesse M.J., Whitney K.D. 2012. Does phylogeny matter? Assessing the impact of phylogenetic information in ecological meta-analysis. Ecol. Lett. 15: 627-636.
-
(2012)
Ecol. Lett.
, vol.15
, pp. 627-636
-
-
Chamberlain, S.A.1
Hovick, S.M.2
Dibble, C.J.3
Rasmussen, N.L.4
Van Allen, B.G.5
Maitner, B.S.6
Ahern, J.R.7
Bell-Dereske, L.P.8
Roy, C.L.9
Meza-Lopez, M.10
Carrillo, J.11
Siemann, E.12
Lajeunesse, M.J.13
Whitney, K.D.14
-
8
-
-
0030588055
-
Full reconstruction of Markov models on evolutionary trees: Identifiability and consistency
-
Chang J. 1996. Full reconstruction of Markov models on evolutionary trees: Identifiability and consistency. Math. Biosci. 137: 51-73.
-
(1996)
Math. Biosci.
, vol.137
, pp. 51-73
-
-
Chang, J.1
-
9
-
-
80054890843
-
Can deliberately incomplete gene sample augmentation improve a phylogeny estimate for the advanced moths and butterflies (Hexapoda: Lepidoptera)?
-
Cho S., Zwick A., Regier J.C., Mitter C., Cummings M.P., Yao J.X., Du Z.L., Zhao H., Kawahara A.Y., Weller S., Davis D.R., Baixeras J., Brown J.W., Parr C. 2011. Can deliberately incomplete gene sample augmentation improve a phylogeny estimate for the advanced moths and butterflies (Hexapoda: Lepidoptera)? Syst. Biol. 60: 782-796.
-
(2011)
Syst. Biol.
, vol.60
, pp. 782-796
-
-
Cho, S.1
Zwick, A.2
Regier, J.C.3
Mitter, C.4
Cummings, M.P.5
Yao, J.X.6
Du, Z.L.7
Zhao, H.8
Kawahara, A.Y.9
Weller, S.10
Davis, D.R.11
Baixeras, J.12
Brown, J.W.13
Parr, C.14
-
10
-
-
84872847984
-
Anatomical enablers and the evolution of C-4 photosynthesis in grasses
-
Christin P.-A., Osborne C.P., Chatelet D.S., Columbus J.T., Besnard G., Hodkinson T.R., Garrison L.M., Vorontsova M.S., Edwards E.J. 2013. Anatomical enablers and the evolution of C-4 photosynthesis in grasses. P. Natl. Acad. Sci. USA 110: 1381-1386.
-
(2013)
P. Natl. Acad. Sci. USA
, vol.110
, pp. 1381-1386
-
-
Christin, P.-A.1
Osborne, C.P.2
Chatelet, D.S.3
Columbus, J.T.4
Besnard, G.5
Hodkinson, T.R.6
Garrison, L.M.7
Vorontsova, M.S.8
Edwards, E.J.9
-
11
-
-
21844513787
-
An efficient algorithm for supertrees
-
Constantinescu M. 1995. An efficient algorithm for supertrees. J. Classif. 12: 101-112.
-
(1995)
J. Classif.
, vol.12
, pp. 101-112
-
-
Constantinescu, M.1
-
14
-
-
84856214128
-
Impact of missing data, gene choice, and taxon sampling on phylogenetic reconstruction: The Caryophyllales (Angiosperms
-
Crawley S.S., Hilu K.W. 2012. Impact of missing data, gene choice, and taxon sampling on phylogenetic reconstruction: The Caryophyllales (Angiosperms). Plant Syst. Evol. 298: 297-312.
-
(2012)
Plant Syst. Evol.
, vol.298
, pp. 297-312
-
-
Crawley, S.S.1
Hilu, K.W.2
-
15
-
-
1842437489
-
A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values
-
Davis J.I., Stevenson D.W., Petersen G., Seberg O., Campbell L.M., Freudenstein J.V., Goldman D.H., Hardy C.R., Michelangeli F.A., Simmons M.P., Specht C.D., Vergara-Silva F., Gandolfo M. 2004. A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values. Syst. Bot. 29: 467-510.
-
(2004)
Syst. Bot.
, vol.29
, pp. 467-510
-
-
Davis, J.I.1
Stevenson, D.W.2
Petersen, G.3
Seberg, O.4
Campbell, L.M.5
Freudenstein, J.V.6
Goldman, D.H.7
Hardy, C.R.8
Michelangeli, F.A.9
Simmons, M.P.10
Specht, C.D.11
Vergara-Silva, F.12
Gandolfo, M.13
-
16
-
-
84873504852
-
Exploring power and parameter estimation of the BiSSE method for analyzing species diversification
-
Davis M.P., Midford P.E., Maddison W. 2013. Exploring power and parameter estimation of the BiSSE method for analyzing species diversification. BMC Evol. Biol. 13: 11.
-
(2013)
BMC Evol. Biol.
, vol.13
, pp. 11
-
-
Davis, M.P.1
Midford, P.E.2
Maddison, W.3
-
17
-
-
0000713911
-
Bootstrap confidence intervals
-
DiCiccio T., Efron B. 1996. Bootstrap confidence intervals. Stat. Sci. 11: 189-228.
-
(1996)
Stat. Sci.
, vol.11
, pp. 189-228
-
-
DiCiccio, T.1
Efron, B.2
-
18
-
-
8444222732
-
Prospects for building the tree of life from large sequence databases
-
Driskell A.C., Ané C., Burleigh J.G., McMahon M.M., OMeara B., Sanderson M.J. 2004. Prospects for building the tree of life from large sequence databases. Science 306: 1172-1174.
-
(2004)
Science
, vol.306
, pp. 1172-1174
-
-
Driskell, A.C.1
Ané, C.2
Burleigh, J.G.3
McMahon, M.M.4
Meara, B.5
Sanderson, M.J.6
-
20
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
21
-
-
84870546247
-
Tempo and mode in plant breeding system evolution
-
Goldberg E.E., Igic B. 2012. Tempo and mode in plant breeding system evolution. Evolution 66: 3701-3709.
-
(2012)
Evolution
, vol.66
, pp. 3701-3709
-
-
Goldberg, E.E.1
Igic, B.2
-
22
-
-
84908021809
-
Hide and vanish: Data sets where the most parsimonious tree is known but hard to find, and their implications for tree search methods
-
Goloboff P. 2014. Hide and vanish: Data sets where the most parsimonious tree is known but hard to find, and their implications for tree search methods. Mol. Phyl. Evol 79: 118-131.
-
(2014)
Mol. Phyl. Evol
, vol.79
, pp. 118-131
-
-
Goloboff, P.1
-
23
-
-
0026296265
-
Homoplasy and the choice among cladograms
-
Goloboff P.A. 1991. Homoplasy and the choice among cladograms. Cladistics 7: 215-232.
-
(1991)
Cladistics
, vol.7
, pp. 215-232
-
-
Goloboff, P.A.1
-
24
-
-
0000803938
-
Consensus supertrees: The synthesis of rooted trees containing overlapping sets of labeled leaves
-
Gordon A.D. 1986. Consensus supertrees: The synthesis of rooted trees containing overlapping sets of labeled leaves. J. Classif. 3: 31-39.
-
(1986)
J. Classif.
, vol.3
, pp. 31-39
-
-
Gordon, A.D.1
-
25
-
-
84865291420
-
Phylogenomic resolution of paleozoic divergences in Harvestmen (Arachnida, Opiliones) via analysis of next-generation transcriptome data
-
Hedin M., Starrett J., Akhter S., Schoenhofer A.L., Shultz J.W. 2012. Phylogenomic resolution of paleozoic divergences in Harvestmen (Arachnida, Opiliones) via analysis of next-generation transcriptome data. PLOS One 7.
-
(2012)
PLOS One
, vol.7
-
-
Hedin, M.1
Starrett, J.2
Akhter, S.3
Schoenhofer, A.L.4
Shultz, J.W.5
-
26
-
-
72749099971
-
Assessing the root of bilaterian animals with scalable phylogenomic methods
-
Hejnol A., Obst M., Stamatakis A., Ott M., Rouse G.W., Edgecombe G.D.,MartinezP., Baguna J., Bailly X., JondeliusU.,Wiens M.,Muller W.E.G., Seaver E., WheelerW.C., Martindale M.Q., Giribet G., Dunn C.W. 2009. Assessing the root of bilaterian animals with scalable phylogenomic methods. P. Roy. Soc. Lond. B Bio. 276: 4261-4270.
-
(2009)
P. Roy. Soc. Lond. B Bio.
, vol.276
, pp. 4261-4270
-
-
Hejnol, A.1
Obst, M.2
Stamatakis, A.3
Ott, M.4
Rouse, G.W.5
Edgecombe, G.D.6
Martinez, P.7
Baguna, J.8
Bailly, X.9
Jondelius, U.10
Wiens, M.11
Muller, W.E.G.12
Seaver, E.13
Wheeler, W.C.14
Martindale, M.Q.15
Giribet, G.16
Dunn, C.W.17
-
27
-
-
79961133759
-
Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: Yeasts revisited
-
Hess J., Goldman N. 2011. Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: Yeasts revisited. PLOS One 6.
-
(2011)
PLOS One
, vol.6
-
-
Hess, J.1
Goldman, N.2
-
28
-
-
84873597223
-
Using supermatrices for phylogenetic inquiry: An example using the sedges
-
Hinchliff C.E., Roalson E.H. 2013. Using supermatrices for phylogenetic inquiry: An example using the sedges. Syst. Biol. 62: 205-219.
-
(2013)
Syst. Biol.
, vol.62
, pp. 205-219
-
-
Hinchliff, C.E.1
Roalson, E.H.2
-
29
-
-
83255165385
-
Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees
-
Izquierdo-Carrasco F., Smith S.A., Stamatakis A. 2011. Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees. BMC Bioinf. 12. DOI: 10.1186/1471-2105-12-470.
-
(2011)
BMC Bioinf.
, vol.12
-
-
Izquierdo-Carrasco, F.1
Smith, S.A.2
Stamatakis, A.3
-
30
-
-
0036554650
-
Fragmentary taxa, missing data, and ambiguity: Mistaken assumptions and conclusions
-
Kearney M. 2002. Fragmentary taxa, missing data, and ambiguity: Mistaken assumptions and conclusions. Syst. Biol. 51: 369-381.
-
(2002)
Syst. Biol.
, vol.51
, pp. 369-381
-
-
Kearney, M.1
-
31
-
-
77949525939
-
Long-branch attraction bias and inconsistency in Bayesian phylogenetics
-
Kolaczkowski B., Thornton J.W. 2009. Long-branch attraction bias and inconsistency in Bayesian phylogenetics. Plos One 4.
-
(2009)
Plos One
, vol.4
-
-
Kolaczkowski, B.1
Thornton, J.W.2
-
32
-
-
67449163699
-
The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
-
Lemmon A.R., Brown J.M., Stanger-Hall K., Lemmon E.M. 2009. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Syst. Biol. 58: 130-145.
-
(2009)
Syst. Biol.
, vol.58
, pp. 130-145
-
-
Lemmon, A.R.1
Brown, J.M.2
Stanger-Hall, K.3
Lemmon, E.M.4
-
33
-
-
84863875375
-
Insect phylogenomics: Results, problems and the impact of matrix composition
-
Letsch H.O., Meusemann K., Wipfler B., Schuette K., Beutel R., Misof B. 2012. Insect phylogenomics: Results, problems and the impact of matrix composition. P. Roy. Soc. Lond. B Bio. 279: 3282-3290.
-
(2012)
P. Roy. Soc. Lond. B Bio.
, vol.279
, pp. 3282-3290
-
-
Letsch, H.O.1
Meusemann, K.2
Wipfler, B.3
Schuette, K.4
Beutel, R.5
Misof, B.6
-
34
-
-
47249090871
-
Optimal data partitioning and a test case for ray-finned fishes (actinopterygii) based on ten nuclear loci
-
Li C.H., Lu G.Q., Orti G. 2008. Optimal data partitioning and a test case for ray-finned fishes (actinopterygii) based on ten nuclear loci. Syst. Biol. 57: 519-539.
-
(2008)
Syst. Biol.
, vol.57
, pp. 519-539
-
-
Li, C.H.1
Lu, G.Q.2
Orti, G.3
-
35
-
-
81455140612
-
RAxML and FastTree: Comparing two methods for large-scale maximum likelihood phylogeny estimation
-
Liu K., Linder C.R.,WarnowT. 2012. RAxML and FastTree: Comparing two methods for large-scale maximum likelihood phylogeny estimation. PLOS One 6.
-
(2012)
PLOS One
, vol.6
-
-
Liu, K.1
Linder C.R.WarnowT.2
-
36
-
-
84960569058
-
The discovery and importance of multiple islands of most-parsimonious trees
-
Maddison D.R. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Syst. Zool. 40: 315-328.
-
(1991)
Syst. Zool.
, vol.40
, pp. 315-328
-
-
Maddison, D.R.1
-
37
-
-
0024940670
-
Reconstructing character evolution on polytomous cladograms
-
MaddisonW. 1989. Reconstructing character evolution on polytomous cladograms. Cladistics 5: 365-377.
-
(1989)
Cladistics
, vol.5
, pp. 365-377
-
-
Maddison, W.1
-
38
-
-
84870495664
-
Locating evolutionary precursors on a phylogenetic tree
-
Marazzi B., Ané C., Simon M.F., Delgado-Salinas A., Luckow M., Sanderson M.J. 2012. Locating evolutionary precursors on a phylogenetic tree. Evolution 66: 3918-3930.
-
(2012)
Evolution
, vol.66
, pp. 3918-3930
-
-
Marazzi, B.1
Ané, C.2
Simon, M.F.3
Delgado-Salinas, A.4
Luckow, M.5
Sanderson, M.J.6
-
39
-
-
84965149936
-
Phylogenetics and the human microbiome
-
Matsen F.A. 2015. Phylogenetics and the human microbiome. Syst. Biol. 64: E26-e41.
-
(2015)
Syst. Biol.
, vol.64
, pp. e26-e41
-
-
Matsen, F.A.1
-
40
-
-
0000148103
-
Retractions of finite distance functions onto tree metrics
-
Moulton V., Steel M.A. 1999. Retractions of finite distance functions onto tree metrics. Discr. Appl. Math. 91: 215-233.
-
(1999)
Discr. Appl. Math.
, vol.91
, pp. 215-233
-
-
Moulton, V.1
Steel, M.A.2
-
41
-
-
57149106289
-
Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo
-
Pagel M., Meade A. 2008. Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo. Philos. T. R. Soc. B. 363: 3955-3964.
-
(2008)
Philos. T. R. Soc. B.
, vol.363
, pp. 3955-3964
-
-
Pagel, M.1
Meade, A.2
-
42
-
-
80052717965
-
A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians
-
Pyron R.A., Wiens J.J. 2011. A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians. Mol. Phylogenet. Evol. 61: 543-583.
-
(2011)
Mol. Phylogenet. Evol.
, vol.61
, pp. 543-583
-
-
Pyron, R.A.1
Wiens, J.J.2
-
43
-
-
84884341444
-
Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation
-
Rabosky D.L., Santini F., Eastman J., Smith S.A., Sidlauskas B., Chang J., Alfaro M.E. 2013. Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation. Nat. Commun. 4.
-
(2013)
Nat. Commun.
, vol.4
-
-
Rabosky, D.L.1
Santini, F.2
Eastman, J.3
Smith, S.A.4
Sidlauskas, B.5
Chang, J.6
Alfaro, M.E.7
-
44
-
-
0030928378
-
Seq-gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
Rambaut A., Grassly N.C. 1997. Seq-gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Cabios 13: 235-238.
-
(1997)
Cabios
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
45
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson D.F., Foulds L.R. 1981. Comparison of phylogenetic trees. Math. Biosci. 53: 131-147.
-
(1981)
Math. Biosci.
, vol.53
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
46
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist F., Teslenko M., van der Mark P., Ayres D.L., Darling A., Hohna S., Larget B., Liu L., Suchard M.A., Huelsenbeck J.P. 2012. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61: 539-542.
-
(2012)
Syst. Biol.
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
Van Der Mark, P.3
Ayres, D.L.4
Darling, A.5
Hohna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
47
-
-
84871842306
-
Impact of missing data on phylogenies inferred from empirical phylogenomic datasets
-
Roure B., Baurain D., Philippe H. 2013. Impact of missing data on phylogenies inferred from empirical phylogenomic datasets. Mol. Biol. Evol. 30: 197-214.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 197-214
-
-
Roure, B.1
Baurain, D.2
Philippe, H.3
-
48
-
-
84904747681
-
Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeatlacking clade of legumes
-
Sabir J., Schwarz E., Ellison N., Zhang J., Baeshen N.A., Mutwakil M., Jansen R., Ruhlman T. 2014. Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeatlacking clade of legumes. Plant Biotech. J. 12: 743-754.
-
(2014)
Plant Biotech. J.
, vol.12
, pp. 743-754
-
-
Sabir, J.1
Schwarz, E.2
Ellison, N.3
Zhang, J.4
Baeshen, N.A.5
Mutwakil, M.6
Jansen, R.7
Ruhlman, T.8
-
49
-
-
84878113118
-
Inferring ancient divergences requires genes with strong phylogenetic signals
-
Salichos L., RokasA. 2013. Inferring ancient divergences requires genes with strong phylogenetic signals. Nature 497: 327-331.
-
(2013)
Nature
, vol.497
, pp. 327-331
-
-
Salichos, L.1
Rokas, A.2
-
50
-
-
0035527401
-
Complexity of the likelihood surface for a large DNA dataset
-
Salter L.A. 2001. Complexity of the likelihood surface for a large DNA dataset. Syst. Biol. 50: 970-978.
-
(2001)
Syst. Biol.
, vol.50
, pp. 970-978
-
-
Salter, L.A.1
-
51
-
-
34548403121
-
Construction and annotation of large phylogenetic trees
-
Sanderson M.J. 2007. Construction and annotation of large phylogenetic trees. Aust. Syst. Bot. 20: 287-301.
-
(2007)
Aust. Syst. Bot.
, vol.20
, pp. 287-301
-
-
Sanderson, M.J.1
-
52
-
-
46849087728
-
Phylogenetic signal in the eukaryotic tree of life
-
Sanderson M.J. 2008. Phylogenetic signal in the eukaryotic tree of life. Science 321: 121-123.
-
(2008)
Science
, vol.321
, pp. 121-123
-
-
Sanderson, M.J.1
-
53
-
-
77952490857
-
Phylogenomics with incomplete taxon coverage: The limits to inference
-
Sanderson M.J., McMahon M.M., Steel M. 2010. Phylogenomics with incomplete taxon coverage: The limits to inference. BMC Evol. Biol. 10: 155.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 155
-
-
Sanderson, M.J.1
McMahon, M.M.2
Steel, M.3
-
55
-
-
84867977644
-
Reconstructing minimal rooted trees
-
Semple C. 2003. Reconstructing minimal rooted trees. Discr. Appl. Math. 127: 489-503.
-
(2003)
Discr. Appl. Math.
, vol.127
, pp. 489-503
-
-
Semple, C.1
-
58
-
-
84858080561
-
Misleading results of likelihood-based phylogenetic analyses in the presence of missing data
-
Simmons M.P. 2012a. Misleading results of likelihood-based phylogenetic analyses in the presence of missing data. Cladistics 28: 208-222.
-
(2012)
Cladistics
, vol.28
, pp. 208-222
-
-
Simmons, M.P.1
-
59
-
-
83655167077
-
Radical instability and spurious branch support by likelihood when applied to matrices with non- random distributions of missing data
-
Simmons M.P. 2012b. Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data. Mol. Phylogenet. Evol. 62: 472-484.
-
(2012)
Mol. Phylogenet. Evol.
, vol.62
, pp. 472-484
-
-
Simmons, M.P.1
-
60
-
-
84894609144
-
Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices
-
Simmons M.P. 2014. Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices. Mol. Phylogenet. Evol. 74: 1-14.
-
(2014)
Mol. Phylogenet. Evol.
, vol.74
, pp. 1-14
-
-
Simmons, M.P.1
-
61
-
-
79960573402
-
Spurious 99% bootstrap and jackknife support for unsupported clades
-
Simmons M.P., Freudenstein J.V. 2011. Spurious 99% bootstrap and jackknife support for unsupported clades. Mol. Phylogenet. Evol. 61: 177-191.
-
(2011)
Mol. Phylogenet. Evol.
, vol.61
, pp. 177-191
-
-
Simmons, M.P.1
Freudenstein, J.V.2
-
62
-
-
84880157756
-
An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters
-
Simmons M.P., Goloboff P.A. 2013. An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters. Mol. Phylogenet. Evol. 69: 265-75.
-
(2013)
Mol. Phylogenet. Evol.
, vol.69
, pp. 265-275
-
-
Simmons, M.P.1
Goloboff, P.A.2
-
63
-
-
84904622865
-
Dubious resolution and support from published sparse supermatrices: The importance of thorough tree searches
-
Simmons M.P., Goloboff P.A. 2014. Dubious resolution and support from published sparse supermatrices: The importance of thorough tree searches. Mol. Phylogenet. Evol. 78: 334-348.
-
(2014)
Mol. Phylogenet. Evol.
, vol.78
, pp. 334-348
-
-
Simmons, M.P.1
Goloboff, P.A.2
-
64
-
-
84965135623
-
Concatabominations: Identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction
-
Siu-Ting K., Pisani D., Creevey C.J., Wilkinson M. 2014. Concatabominations: Identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction. Syst. Biol. 64: 137-143.
-
(2014)
Syst. Biol.
, vol.64
, pp. 137-143
-
-
Siu-Ting, K.1
Pisani, D.2
Creevey, C.J.3
Wilkinson, M.4
-
65
-
-
60849123934
-
Mega-phylogeny approach for comparative biology: An alternative to supertree and supermatrix approaches
-
Smith S.A., Beaulieu J.M., Donoghue M.J. 2009. Mega-phylogeny approach for comparative biology: An alternative to supertree and supermatrix approaches. BMC Evol. Biol. 9.
-
(2009)
BMC Evol. Biol.
, vol.9
-
-
Smith, S.A.1
Beaulieu, J.M.2
Donoghue, M.J.3
-
66
-
-
85006651318
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. Stamatakis A., Alachiotis N. 2010. Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data
-
Stamatakis A. 2014. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. Stamatakis A., Alachiotis N. 2010. Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data. Bioinformatics 26: I132-i139.
-
(2014)
Bioinformatics
, vol.26
, pp. i132-i139
-
-
Stamatakis, A.1
-
67
-
-
52449147252
-
The complexity of reconstructing trees from qualitative characters and subtrees
-
Steel M. 1992. The complexity of reconstructing trees from qualitative characters and subtrees. J. Classif. 9: 91-116.
-
(1992)
J. Classif.
, vol.9
, pp. 91-116
-
-
Steel, M.1
-
68
-
-
70350620991
-
Characterizing phylogenetically decisive taxon coverage
-
Steel M., Sanderson M.J. 2010. Characterizing phylogenetically decisive taxon coverage. Appl. Math. Lett. 23: 82-86.
-
(2010)
Appl. Math. Lett.
, vol.23
, pp. 82-86
-
-
Steel, M.1
Sanderson, M.J.2
-
69
-
-
57149094695
-
On the distributions of bootstrap support and posterior distributions for a star tree
-
Susko E. 2008. On the distributions of bootstrap support and posterior distributions for a star tree. Syst. Biol. 57: 602-612.
-
(2008)
Syst. Biol.
, vol.57
, pp. 602-612
-
-
Susko, E.1
-
70
-
-
67749122255
-
Bootstrap support is not first order correct
-
Susko E. 2009. Bootstrap support is not first order correct. Syst. Biol. 58: 211-233.
-
(2009)
Syst. Biol.
, vol.58
, pp. 211-233
-
-
Susko, E.1
-
72
-
-
79955163449
-
Re-evolution of lostmandibular teeth in frogs aftermore than 200 million years, and re-evaluating Dollo's law
-
Wiens J.J. 2011.Re-evolution of lostmandibular teeth in frogs aftermore than 200 million years, and re-evaluating Dollo's law. Evolution 65: 1283-1296.
-
(2011)
Evolution
, vol.65
, pp. 1283-1296
-
-
Wiens, J.J.1
-
73
-
-
80052006478
-
Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data
-
Wiens J.J., Morrill M.C. 2011. Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data. Syst. Biol. 60: 719-731.
-
(2011)
Syst. Biol.
, vol.60
, pp. 719-731
-
-
Wiens, J.J.1
Morrill, M.C.2
-
74
-
-
12044253960
-
Common cladistic information and its consensus representation: Reduced adams and reduced cladistic consensus trees and profiles
-
Wilkinson M. 1994. Common cladistic information and its consensus representation: Reduced adams and reduced cladistic consensus trees and profiles. Syst. Biol. 43: 343-368.
-
(1994)
Syst. Biol.
, vol.43
, pp. 343-368
-
-
Wilkinson, M.1
-
75
-
-
0029498439
-
Coping with abundant missing entries in phylogenetic inference using parsimony
-
Wilkinson M. 1995. Coping with abundant missing entries in phylogenetic inference using parsimony. Syst Biol. 44: 501-514.
-
(1995)
Syst Biol.
, vol.44
, pp. 501-514
-
-
Wilkinson, M.1
-
76
-
-
0043205924
-
Missing entries and multiple trees: Instability, relationships and support in parsimony analysis
-
Wilkinson M. 2003. Missing entries and multiple trees: Instability, relationships and support in parsimony analysis. J. Vert. Paleo. 23: 311-323.
-
(2003)
J. Vert. Paleo.
, vol.23
, pp. 311-323
-
-
Wilkinson, M.1
-
77
-
-
0344761871
-
Sphenodontid phylogeny and the problems of multiple trees
-
Wilkinson M., Benton M.J. 1996. Sphenodontid phylogeny and the problems of multiple trees. Philos. T. Roy. Soc. B. 351: 1-16.
-
(1996)
Philos. T. Roy. Soc. B.
, vol.351
, pp. 1-16
-
-
Wilkinson, M.1
Benton, M.J.2
-
78
-
-
85029048951
-
Supertree methods for building the tree of life: Divide-and-conquer approaches to large phylogenetic problems
-
In: Hodkinson T.R., Parnell J.A.N., editors London: CRC Press (Systematics Association Special Volume
-
Wilkinson M., Cotton J.A. 2006. Supertree methods for building the tree of life: Divide-and-conquer approaches to large phylogenetic problems. In: Hodkinson T.R., Parnell J.A.N., editors. Reconstructing the Tree of Life: Taxonomy and Systematics of Large and Species Rich Taxa. London: CRC Press (Systematics Association Special Volume), p. 61-75.
-
(2006)
Reconstructing the Tree of Life: Taxonomy and Systematics of Large and Species Rich Taxa
, pp. 61-75
-
-
Wilkinson, M.1
Cotton, J.A.2
-
79
-
-
84894052682
-
Phylogenomics and coalescent analyses resolve extant seed plant relationships
-
Xi Z.X., Rest J.S., Davis C.C. 2013. Phylogenomics and coalescent analyses resolve extant seed plant relationships.PLOSOne8: E80870.
-
(2013)
PLOSOne
, vol.8
, pp. e80870
-
-
Xi, Z.X.1
Rest, J.S.2
Davis, C.C.3
-
80
-
-
84893775904
-
Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance
-
Yu C., He R.L., Yau S.S.T. 2014. Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance. J. Theor. Biol. 348: 12-20.
-
(2014)
J. Theor. Biol.
, vol.348
, pp. 12-20
-
-
Yu, C.1
He, R.L.2
Yau, S.S.T.3
-
81
-
-
84893811752
-
Three keys to the radiation of angiosperms into freezing environments
-
Zanne A.E., Tank D.C., Cornwell W.K., Eastman J.M., Smith S.A., FitzJohn R.G., McGlinn D.J., O'Meara B.C., Moles A.T., Reich P.B., Royer D.L., Soltis D.E., Stevens P.F.,Westoby M.,Wright I.J.,Aarssen L., Bertin R.I., Calaminus A., Govaerts R., Hemmings F., Leishman M.R., Oleksyn J., Soltis P.S., Swenson N.G., Warman L., Beaulieu J.M. 2014. Three keys to the radiation of angiosperms into freezing environments. Nature 506: 89-92.
-
(2014)
Nature
, vol.506
, pp. 89-92
-
-
Zanne, A.E.1
Tank, D.C.2
Cornwell, W.K.3
Eastman, J.M.4
Smith, S.A.5
Fitz John, R.G.6
McGlinn, D.J.7
O'Meara, B.C.8
Moles, A.T.9
Reich, P.B.10
Royer, D.L.11
Soltis, D.E.12
Stevens, P.F.13
Westoby, M.14
Wright, I.J.15
Aarssen, L.16
Bertin, R.I.17
Calaminus, A.18
Govaerts, R.19
Hemmings, F.20
Leishman, M.R.21
Oleksyn, J.22
Soltis, P.S.23
Swenson, N.G.24
Warman, L.25
Beaulieu, J.M.26
more..
-
83
-
-
84906251283
-
Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
-
Zwickl D.J., Wing R., Stein J., Ware D., Sanderson M.J. 2014. Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3. Syst. Biol. 63: 645-659.
-
(2014)
Syst. Biol.
, vol.63
, pp. 645-659
-
-
Zwickl, D.J.1
Wing, R.2
Stein, J.3
Ware, D.4
Sanderson, M.J.5
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