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Volumn 298, Issue 2, 2012, Pages 297-312

Impact of missing data, gene choice, and taxon sampling on phylogenetic reconstruction: The Caryophyllales (angiosperms)

Author keywords

Angiosperm; Caryophyllales; Missing data; Phylogenetics; Taxon sampling

Indexed keywords

CARYOPHYLLALES; MAGNOLIOPHYTA;

EID: 84856214128     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-011-0544-x     Document Type: Article
Times cited : (26)

References (103)
  • 1
    • 50349096433 scopus 로고    scopus 로고
    • The phylogeny of Cetartiodactyla: the importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies
    • Agnarsson I, May-Collado LJ (2008) The phylogeny of Cetartiodactyla: the importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies. Mol Phylogenet Evol 48: 964-985.
    • (2008) Mol Phylogenet Evol , vol.48 , pp. 964-985
    • Agnarsson, I.1    May-Collado, L.J.2
  • 2
    • 0027117868 scopus 로고
    • Carnivorous plants: phylogeny and structural evolution
    • Albert VA, Williams SE, Chase MW (1992) Carnivorous plants: phylogeny and structural evolution. Science 257: 1491-1495.
    • (1992) Science , vol.257 , pp. 1491-1495
    • Albert, V.A.1    Williams, S.E.2    Chase, M.W.3
  • 4
    • 0037393246 scopus 로고    scopus 로고
    • An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG&II
    • APG II
    • APG II (2003) An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG&II. Bot J Linn Soc 141: 399-436.
    • (2003) Bot J Linn Soc , vol.141 , pp. 399-436
  • 5
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG&III
    • APG III
    • APG III (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG&III. Bot J Linn Socy 161: 105-121.
    • (2009) Bot J Linn Socy , vol.161 , pp. 105-121
  • 6
    • 0034977850 scopus 로고    scopus 로고
    • Phylogeny of the portulacaceous cohort based on ndhF sequence data
    • Applequist WL, Wallace RS (2001) Phylogeny of the portulacaceous cohort based on ndhF sequence data. Syst Bot 26: 406-419.
    • (2001) Syst Bot , vol.26 , pp. 406-419
    • Applequist, W.L.1    Wallace, R.S.2
  • 7
    • 34548032178 scopus 로고    scopus 로고
    • Expression of matK: functional and evolutionary implications
    • Barthet MM, Hilu KW (2007) Expression of matK: functional and evolutionary implications. Am J Bot 94: 1402-1412.
    • (2007) Am J Bot , vol.94 , pp. 1402-1412
    • Barthet, M.M.1    Hilu, K.W.2
  • 8
    • 0002072551 scopus 로고
    • Sieve-element plastids: their significance for the evolution and systematics of the order
    • H.-D. Behnke and T. J. Mabry (Eds.), Berlin, Germany: Springer
    • Behnke H-D (1994) Sieve-element plastids: their significance for the evolution and systematics of the order. In: Behnke H-D, Mabry TJ (eds) Caryophyllales: evolution and systematics. Springer, Berlin, Germany, pp 87-121.
    • (1994) Caryophyllales: Evolution and Systematics , pp. 87-121
    • Behnke, H.-D.1
  • 10
    • 0037594762 scopus 로고    scopus 로고
    • Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms
    • Borsch T, Hilu KW, Quandt D, Wilde V, Neinhuis C, Barthlott W (2003) Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms. J Evol Biol 16: 558-576.
    • (2003) J Evol Biol , vol.16 , pp. 558-576
    • Borsch, T.1    Hilu, K.W.2    Quandt, D.3    Wilde, V.4    Neinhuis, C.5    Barthlott, W.6
  • 11
  • 12
    • 65349083699 scopus 로고    scopus 로고
    • Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis of angiosperms
    • Burleigh JG, Hilu KW, Soltis DE (2009) Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis of angiosperms. BMC Evol Biol 9: 61.
    • (2009) BMC Evol Biol , vol.9 , pp. 61
    • Burleigh, J.G.1    Hilu, K.W.2    Soltis, D.E.3
  • 13
    • 0036741241 scopus 로고    scopus 로고
    • Molecular evidence for the common origin of snap-traps among carnivorous plants
    • Cameron KM, Wurdack KJ, Jobson RW (2002) Molecular evidence for the common origin of snap-traps among carnivorous plants. Am J Bot 89: 1503-1509.
    • (2002) Am J Bot , vol.89 , pp. 1503-1509
    • Cameron, K.M.1    Wurdack, K.J.2    Jobson, R.W.3
  • 15
    • 0029188719 scopus 로고
    • A phylogeny of the grass family (Poaceae) based on ndhF sequence data
    • Clark LG, Zhang W, Wendel JF (1995) A phylogeny of the grass family (Poaceae) based on ndhF sequence data. Syst Bot 20: 436-460.
    • (1995) Syst Bot , vol.20 , pp. 436-460
    • Clark, L.G.1    Zhang, W.2    Wendel, J.F.3
  • 16
    • 0036188663 scopus 로고    scopus 로고
    • Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences
    • Cuénoud P, Savolainen V, Chatrou LW, Powell MP, Grayer RJ, Chase MW (2002) Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. Am J Bot 89: 132-144.
    • (2002) Am J Bot , vol.89 , pp. 132-144
    • Cuénoud, P.1    Savolainen, V.2    Chatrou, L.W.3    Powell, M.P.4    Grayer, R.J.5    Chase, M.W.6
  • 18
    • 0030945183 scopus 로고    scopus 로고
    • Relationships in the Caryophyllales as suggested by phylogenetic analyses of partial chloroplast DNA ORF2280 homolog sequences
    • Downie SR, Katz-Downie DS, Cho K-J (1997) Relationships in the Caryophyllales as suggested by phylogenetic analyses of partial chloroplast DNA ORF2280 homolog sequences. Am J Bot 84: 253-273.
    • (1997) Am J Bot , vol.84 , pp. 253-273
    • Downie, S.R.1    Katz-Downie, D.S.2    Cho, K.-J.3
  • 19
    • 0003031867 scopus 로고
    • Phylogenetic relationships using restriction site variation of the chloroplast DNA inverted repeat
    • H.-D. Behnke and T. J. Mabry (Eds.), Berlin: Springer
    • Downie SR, Palmer JD (1994) Phylogenetic relationships using restriction site variation of the chloroplast DNA inverted repeat. In: Behnke H-D, Mabry TJ (eds) Caryophyllales: evolution and systematics. Springer, Berlin, pp 223-233.
    • (1994) Caryophyllales: Evolution and Systematics , pp. 223-233
    • Downie, S.R.1    Palmer, J.D.2
  • 20
    • 0000479431 scopus 로고
    • Isolation of plant DNA from fresh tissue
    • Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12: 13-25.
    • (1990) Focus , vol.12 , pp. 13-25
    • Doyle, J.J.1    Doyle, J.L.2
  • 21
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar Robert C (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar Robert, C.1
  • 22
    • 21344444797 scopus 로고    scopus 로고
    • Basal cactus phylogeny: implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form
    • Edwards EJ, Nyffeler R, Donoghue MJ (2005) Basal cactus phylogeny: implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form. Am J Bot 92: 1177-1188.
    • (2005) Am J Bot , vol.92 , pp. 1177-1188
    • Edwards, E.J.1    Nyffeler, R.2    Donoghue, M.J.3
  • 23
    • 84983540175 scopus 로고
    • The retention index and the rescaled consistency index
    • Farris JS (1989) The retention index and the rescaled consistency index. Cladistics 5: 417-419.
    • (1989) Cladistics , vol.5 , pp. 417-419
    • Farris, J.S.1
  • 24
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 26
    • 33644781584 scopus 로고    scopus 로고
    • Molecular phylogeny of the Caryophyllaceae (Caryophyllales) inferred from chloroplast matK and nuclear rDNA ITS sequences
    • Fior S, Karis PO, Casazza G, Minuto L, Sala F (2006) Molecular phylogeny of the Caryophyllaceae (Caryophyllales) inferred from chloroplast matK and nuclear rDNA ITS sequences. Am J Bot 93: 399-411.
    • (2006) Am J Bot , vol.93 , pp. 399-411
    • Fior, S.1    Karis, P.O.2    Casazza, G.3    Minuto, L.4    Sala, F.5
  • 27
    • 34547771629 scopus 로고    scopus 로고
    • Phylogeny, evolution and systematics of Moehringia (Caryophyllaceae) as inferred from molecular and morphological data: a case of homology reassessment
    • Fior S, Karis PO (2007) Phylogeny, evolution and systematics of Moehringia (Caryophyllaceae) as inferred from molecular and morphological data: a case of homology reassessment. Cladistics 23: 362-372.
    • (2007) Cladistics , vol.23 , pp. 362-372
    • Fior, S.1    Karis, P.O.2
  • 28
    • 78349298734 scopus 로고    scopus 로고
    • Branch support via resampling; an empirical study
    • Freudenstein JV, Davis JI (2010) Branch support via resampling; an empirical study. Cladistics 26: 643-656.
    • (2010) Cladistics , vol.26 , pp. 643-656
    • Freudenstein, J.V.1    Davis, J.I.2
  • 29
    • 0003136612 scopus 로고    scopus 로고
    • Taxonomic revision of Carusia (Reptilia: Squamata) from the late cretaceous of the gobi desert and phylogenetic relationships of anguimorphan lizards
    • Gao K, Norell MA (1998) Taxonomic revision of Carusia (Reptilia: Squamata) from the late cretaceous of the gobi desert and phylogenetic relationships of anguimorphan lizards. Am Mus Novitates 3230: 1-52.
    • (1998) Am Mus Novitates , vol.3230 , pp. 1-52
    • Gao, K.1    Norell, M.A.2
  • 30
    • 0001280046 scopus 로고
    • Saurischian monophyly and the origin of birds
    • Gauthier J (1986) Saurischian monophyly and the origin of birds. Memoirs Calif Acad Sci 8: 1-56.
    • (1986) Memoirs Calif Acad Sci , vol.8 , pp. 1-56
    • Gauthier, J.1
  • 31
    • 84856229907 scopus 로고    scopus 로고
    • GenBank
    • GenBank (2009) (http://www. ncbi. nlm. nih. gov/Genbank/genbankstats. html).
    • (2009)
  • 32
    • 0002843850 scopus 로고
    • Evolutionary relationships of the Caryophyllidae based on comparative rbcL sequences
    • Giannasi DE, Zurawski G, Learn G, Clegg MT (1992) Evolutionary relationships of the Caryophyllidae based on comparative rbcL sequences. Syst Bot 17: 1-15.
    • (1992) Syst Bot , vol.17 , pp. 1-15
    • Giannasi, D.E.1    Zurawski, G.2    Learn, G.3    Clegg, M.T.4
  • 33
    • 0032025857 scopus 로고    scopus 로고
    • Is it better to add taxa or characters to a difficult phylogenetic problem?
    • Graybeal A (1998) Is it better to add taxa or characters to a difficult phylogenetic problem? Syst Biol 47: 9-17.
    • (1998) Syst Biol , vol.47 , pp. 9-17
    • Graybeal, A.1
  • 34
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis DM (1996) Inferring complex phylogenies. Nature 383: 130-131.
    • (1996) Nature , vol.383 , pp. 130-131
    • Hillis, D.M.1
  • 35
    • 0242669921 scopus 로고    scopus 로고
    • Is sparse taxon sampling a problem for phylogenetic inference?
    • Hillis DM, Pollock DD, McGuire JA, Zwickl DJ (2003) Is sparse taxon sampling a problem for phylogenetic inference? Syst Biol 52: 124-126.
    • (2003) Syst Biol , vol.52 , pp. 124-126
    • Hillis, D.M.1    Pollock, D.D.2    McGuire, J.A.3    Zwickl, D.J.4
  • 36
    • 0033299905 scopus 로고    scopus 로고
    • Evolutionary implications of matK indels in Poaceae
    • Hilu KW, Alice LA (1999) Evolutionary implications of matK indels in Poaceae. Am J Bot 86: 1735-1741.
    • (1999) Am J Bot , vol.86 , pp. 1735-1741
    • Hilu, K.W.1    Alice, L.A.2
  • 38
    • 0000259305 scopus 로고
    • The utility of atpB gene sequences in resolving phylogenetic relationships: comparison with rbcL and 18S ribosomal DNA sequences in the Lardizabalaceae
    • Hoot SB, Culham A, Crane PR (1995) The utility of atpB gene sequences in resolving phylogenetic relationships: comparison with rbcL and 18S ribosomal DNA sequences in the Lardizabalaceae. Ann MO Bot Garden 82: 194-207.
    • (1995) Ann MO Bot Garden , vol.82 , pp. 194-207
    • Hoot, S.B.1    Culham, A.2    Crane, P.R.3
  • 39
    • 84960586331 scopus 로고
    • When are fossils better than extant taxa in phylogenetic analysis?
    • Huelsenbeck JP (1991) When are fossils better than extant taxa in phylogenetic analysis? Syst Zool 40: 458-469.
    • (1991) Syst Zool , vol.40 , pp. 458-469
    • Huelsenbeck, J.P.1
  • 41
    • 78650475518 scopus 로고    scopus 로고
    • Complete plastid genome sequences of three rosids (Castanea, Prunus, Theobroma): evidence for at least two independent transfers of rpl22 to the nucleus
    • Jansen RK, Saski C, Lee S-B, Hansen AK, Daniell H (2011) Complete plastid genome sequences of three rosids (Castanea, Prunus, Theobroma): evidence for at least two independent transfers of rpl22 to the nucleus. Mol Biol Evol 28: 835-847.
    • (2011) Mol Biol Evol , vol.28 , pp. 835-847
    • Jansen, R.K.1    Saski, C.2    Lee, S.-B.3    Hansen, A.K.4    Daniell, H.5
  • 42
    • 0000890115 scopus 로고
    • Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences
    • Johnson LA, Soltis DE (1995) Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Ann MO Bot Gardens 82: 149-175.
    • (1995) Ann MO Bot Gardens , vol.82 , pp. 149-175
    • Johnson, L.A.1    Soltis, D.E.2
  • 44
    • 0842302321 scopus 로고    scopus 로고
    • Phylogeny of Amaranthaceae and Chenopodiaceae and the evolution of C4 photosynthesis
    • Kadereit G, Borsch T, Weising K, Freitag H (2003) Phylogeny of Amaranthaceae and Chenopodiaceae and the evolution of C4 photosynthesis. Int J Plant Sci 164: 959-986.
    • (2003) Int J Plant Sci , vol.164 , pp. 959-986
    • Kadereit, G.1    Borsch, T.2    Weising, K.3    Freitag, H.4
  • 45
    • 0032420129 scopus 로고    scopus 로고
    • Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants, and flowering plants
    • Källersjö M, Farris JS, Chase MW, Bremer B, Fay MF, Humphries CJ, Petersen G, Seberg O, Bremer K (1998) Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants, and flowering plants. Plant Syst Evol 213: 259-287.
    • (1998) Plant Syst Evol , vol.213 , pp. 259-287
    • Källersjö, M.1    Farris, J.S.2    Chase, M.W.3    Bremer, B.4    Fay, M.F.5    Humphries, C.J.6    Petersen, G.7    Seberg, O.8    Bremer, K.9
  • 47
    • 66449116084 scopus 로고    scopus 로고
    • Phylogeny and biogeography of Hawkmoths (Lepidoptera: Sphingiae): evidence from five nuclear genes
    • Kawahara AY, Mignault AA, Regier JC, Kitching IJ, Mitter C (2009) Phylogeny and biogeography of Hawkmoths (Lepidoptera: Sphingiae): evidence from five nuclear genes. PLoS One 4: 1-11.
    • (2009) PLoS One , vol.4 , pp. 1-11
    • Kawahara, A.Y.1    Mignault, A.A.2    Regier, J.C.3    Kitching, I.J.4    Mitter, C.5
  • 48
    • 0036554650 scopus 로고    scopus 로고
    • Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions
    • Kearney M (2002) Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions. Syst Biol 51: 369-381.
    • (2002) Syst Biol , vol.51 , pp. 369-381
    • Kearney, M.1
  • 49
    • 0037649497 scopus 로고    scopus 로고
    • Problems due to missing data in phylogenetic analyses including fossils: a critical review
    • Kearney M, Clark JM (2003) Problems due to missing data in phylogenetic analyses including fossils: a critical review. J Vertebr Paleontol 23: 263-274.
    • (2003) J Vertebr Paleontol , vol.23 , pp. 263-274
    • Kearney, M.1    Clark, J.M.2
  • 50
    • 0034491886 scopus 로고    scopus 로고
    • The evolution of non-coding chloroplast DNA and its application in plant systematics
    • Kelchner SA (2000) The evolution of non-coding chloroplast DNA and its application in plant systematics. Ann MO Bot Garden 87: 482-498.
    • (2000) Ann MO Bot Garden , vol.87 , pp. 482-498
    • Kelchner, S.A.1
  • 53
    • 56849121534 scopus 로고    scopus 로고
    • Phylogeny of Catalpa (Bignoniaceae) inferred from sequences of chloroplast ndhF and nuclear ribosomal DNA
    • Li J (2008) Phylogeny of Catalpa (Bignoniaceae) inferred from sequences of chloroplast ndhF and nuclear ribosomal DNA. Syst Evol 46: 341-348.
    • (2008) Syst Evol , vol.46 , pp. 341-348
    • Li, J.1
  • 54
    • 0030037959 scopus 로고    scopus 로고
    • Application of the matK gene sequences to grass systematics
    • Liang H, Hilu KW (1996) Application of the matK gene sequences to grass systematics. Can J Bot 74: 125-134.
    • (1996) Can J Bot , vol.74 , pp. 125-134
    • Liang, H.1    Hilu, K.W.2
  • 55
    • 34547803149 scopus 로고    scopus 로고
    • Phylogenetic supermatrix analysis of genbank sequences from 2228 papilionoid legumes
    • McMahon MM, Sanderson MJ (2006) Phylogenetic supermatrix analysis of genbank sequences from 2228 papilionoid legumes. Syst Biol 55: 818-836.
    • (2006) Syst Biol , vol.55 , pp. 818-836
    • McMahon, M.M.1    Sanderson, M.J.2
  • 56
    • 0035010918 scopus 로고    scopus 로고
    • Molecular phylogeny of Nepenthaceae based on cladistic analysis of plastid trnK intron sequence data
    • Meimberg H, Wistuba A, Dittrich P, Heubl G (2001) Molecular phylogeny of Nepenthaceae based on cladistic analysis of plastid trnK intron sequence data. Plant Biol 3: 164-175.
    • (2001) Plant Biol , vol.3 , pp. 164-175
    • Meimberg, H.1    Wistuba, A.2    Dittrich, P.3    Heubl, G.4
  • 57
    • 37549054628 scopus 로고    scopus 로고
    • Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
    • Moore MJ, Bell CD, Soltis PS, Soltis DE (2007) Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc Natl Acad Sci USA 104: 19363-19368.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19363-19368
    • Moore, M.J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 58
  • 59
    • 11144358140 scopus 로고    scopus 로고
    • PRAP-computation of Bremer support for large data sets
    • Müller K (2004) PRAP-computation of Bremer support for large data sets. Mol Phylogen Evol 31: 780-782.
    • (2004) Mol Phylogen Evol , vol.31 , pp. 780-782
    • Müller, K.1
  • 60
    • 18244399200 scopus 로고    scopus 로고
    • Phylogenetics of Amaranthaceae based on matK/trnK sequence data-evidence from parsimony, likelihood, and bayesian analyses
    • Müller KF, Borsch T (2005) Phylogenetics of Amaranthaceae based on matK/trnK sequence data-evidence from parsimony, likelihood, and bayesian analyses. Ann MO Bot Gardens 92: 66-102.
    • (2005) Ann MO Bot Gardens , vol.92 , pp. 66-102
    • Müller, K.F.1    Borsch, T.2
  • 61
    • 33748594712 scopus 로고    scopus 로고
    • Phylogenetic utility of rapidly evolving DNA at high taxonomical levels: contrasting matK, trnT-F and rbcL in basal angiosperms
    • Müller KF, Borsch T, Hilu KW (2006) Phylogenetic utility of rapidly evolving DNA at high taxonomical levels: contrasting matK, trnT-F and rbcL in basal angiosperms. Mol Phylogen Evol 41: 99-117.
    • (2006) Mol Phylogen Evol , vol.41 , pp. 99-117
    • Müller, K.F.1    Borsch, T.2    Hilu, K.W.3
  • 62
    • 0033504552 scopus 로고    scopus 로고
    • The parsimony ratchet, a new method for rapid parsimony analysis
    • Nixon KC (1999) The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407-414.
    • (1999) Cladistics , vol.15 , pp. 407-414
    • Nixon, K.C.1
  • 63
    • 11944252893 scopus 로고
    • Fossils, topologies, missing data, and the higher level phylogeny of eutherian mammals
    • Novacek MJ (1992) Fossils, topologies, missing data, and the higher level phylogeny of eutherian mammals. Syst Biol 41: 58-73.
    • (1992) Syst Biol , vol.41 , pp. 58-73
    • Novacek, M.J.1
  • 64
    • 0036189278 scopus 로고    scopus 로고
    • Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK/matK and trnL-trnF sequences
    • Nyffeler R (2002) Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK/matK and trnL-trnF sequences. Am J Bot 89: 312-326.
    • (2002) Am J Bot , vol.89 , pp. 312-326
    • Nyffeler, R.1
  • 65
    • 34250730829 scopus 로고    scopus 로고
    • The closest relatives of cacti: insights from phylogenetic analyses of chloroplast and mitochondrial sequences with special emphasis on relationships in the tribe Anacampseroteae
    • Nyffeler R (2007) The closest relatives of cacti: insights from phylogenetic analyses of chloroplast and mitochondrial sequences with special emphasis on relationships in the tribe Anacampseroteae. Am J Bot 94: 89-101.
    • (2007) Am J Bot , vol.94 , pp. 89-101
    • Nyffeler, R.1
  • 66
    • 0000878797 scopus 로고
    • Monophyly of the Asteridae and identification of their major lineages inferred from dna sequences of rbcL
    • Olmstead RG, Michaels HJ, Scott KM, Palmer JD (1992) Monophyly of the Asteridae and identification of their major lineages inferred from dna sequences of rbcL. Ann MO Bot Garden 79: 249-265.
    • (1992) Ann MO Bot Garden , vol.79 , pp. 249-265
    • Olmstead, R.G.1    Michaels, H.J.2    Scott, K.M.3    Palmer, J.D.4
  • 68
    • 20744434712 scopus 로고    scopus 로고
    • Molecular systematics of montieae (Portulacaceae): implications for taxonomy, biogeography and ecology
    • O'Quinn R, Hufford L (2005) Molecular systematics of montieae (Portulacaceae): implications for taxonomy, biogeography and ecology. Syst Bot 30: 314-331.
    • (2005) Syst Bot , vol.30 , pp. 314-331
    • O'Quinn, R.1    Hufford, L.2
  • 71
    • 0036699885 scopus 로고    scopus 로고
    • Increased taxon sampling is advantageous for phylogenetic inference
    • Pollock DD, Zwickl DJ, McGuire JA, Hillis DM (2002) Increased taxon sampling is advantageous for phylogenetic inference. Syst Biol 51: 664-671.
    • (2002) Syst Biol , vol.51 , pp. 664-671
    • Pollock, D.D.1    Zwickl, D.J.2    McGuire, J.A.3    Hillis, D.M.4
  • 72
    • 23744507531 scopus 로고    scopus 로고
    • Phylogeny and evolution of ferns (Monilophytes) with a focus on the early leptosporangiate divergences
    • Pryer KM, Schuettpelz E, Wolf PG, Schneider H, Smith AR, Cranfill R (2004) Phylogeny and evolution of ferns (Monilophytes) with a focus on the early leptosporangiate divergences. Am J Bot 91: 1582-1598.
    • (2004) Am J Bot , vol.91 , pp. 1582-1598
    • Pryer, K.M.1    Schuettpelz, E.2    Wolf, P.G.3    Schneider, H.4    Smith, A.R.5    Cranfill, R.6
  • 75
    • 0032225752 scopus 로고    scopus 로고
    • Taxon sampling and the accuracy of large phylogneies
    • Rannala B, Huelsenbeck JP, Yang Z, Nielsen R (1998) Taxon sampling and the accuracy of large phylogneies. Syst Biol 47: 702-710.
    • (1998) Syst Biol , vol.47 , pp. 702-710
    • Rannala, B.1    Huelsenbeck, J.P.2    Yang, Z.3    Nielsen, R.4
  • 76
    • 0001727906 scopus 로고
    • Phylogeny of the Caryophyllales-gene sequence data
    • Rettig JH, Wilson HD, Manhart JR (1992) Phylogeny of the Caryophyllales-gene sequence data. Taxon 41: 201-209.
    • (1992) Taxon , vol.41 , pp. 201-209
    • Rettig, J.H.1    Wilson, H.D.2    Manhart, J.R.3
  • 77
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
    • Rokas A, Carroll SB (2005) More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol Biol Evol 22: 1337-1344.
    • (2005) Mol Biol Evol , vol.22 , pp. 1337-1344
    • Rokas, A.1    Carroll, S.B.2
  • 78
    • 41549105074 scopus 로고    scopus 로고
    • Reconstructing the phylogeny of figs (Ficus, Moraceae) to reveal the history of the fig pollination mutualism
    • Rønsted N, Weiblen GD, Clement WL, Zerega NJC, Savolainen V (2008) Reconstructing the phylogeny of figs (Ficus, Moraceae) to reveal the history of the fig pollination mutualism. Symbiosis 45: 1-12.
    • (2008) Symbiosis , vol.45 , pp. 1-12
    • Rønsted, N.1    Weiblen, G.D.2    Clement, W.L.3    Zerega, N.J.C.4    Savolainen, V.5
  • 79
    • 0035845536 scopus 로고    scopus 로고
    • Incomplete taxon sampling is not a problem for phylogenetic inference
    • Rosenberg MS, Kumar S (2001) Incomplete taxon sampling is not a problem for phylogenetic inference. PNAS 98: 10751-10756.
    • (2001) Pnas , vol.98 , pp. 10751-10756
    • Rosenberg, M.S.1    Kumar, S.2
  • 80
    • 41849134003 scopus 로고    scopus 로고
    • Phylogenetics of Polygonaceae with an emphasis on the evolution of Eriogonoideae
    • Sanchez A, Kron KA (2008) Phylogenetics of Polygonaceae with an emphasis on the evolution of Eriogonoideae. Syst Bot 33: 87-96.
    • (2008) Syst Bot , vol.33 , pp. 87-96
    • Sanchez, A.1    Kron, K.A.2
  • 82
    • 0036677779 scopus 로고    scopus 로고
    • Subfamilial relationships within Caryophyllaceae as inferred from 5' ndhF sequences
    • Smissen RD, Clement JC, Garnock-Jones PJ, Chambers GK (2002) Subfamilial relationships within Caryophyllaceae as inferred from 5' ndhF sequences. Am J Bot 89: 1336-1341.
    • (2002) Am J Bot , vol.89 , pp. 1336-1341
    • Smissen, R.D.1    Clement, J.C.2    Garnock-Jones, P.J.3    Chambers, G.K.4
  • 83
    • 0031421235 scopus 로고    scopus 로고
    • Tribal Relationships in the Gesneriaceae: evidence from DNA sequences of the chloroplast gene ndhF
    • Smith JF, Wolfram JC, Brown KD, Carroll CL, Denton DS (1997) Tribal Relationships in the Gesneriaceae: evidence from DNA sequences of the chloroplast gene ndhF. Ann MO Bot Garden 84: 50-66.
    • (1997) Ann MO Bot Garden , vol.84 , pp. 50-66
    • Smith, J.F.1    Wolfram, J.C.2    Brown, K.D.3    Carroll, C.L.4    Denton, D.S.5
  • 87
    • 50249100595 scopus 로고    scopus 로고
    • A Fast Bootstrapping Algorithm for the RAxML Web Servers
    • Stamatakis A, Hoover P, Rougemont J (2008) A Fast Bootstrapping Algorithm for the RAxML Web Servers. Systematic Biol 57: 758-771.
    • (2008) Systematic Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 90
    • 60149094050 scopus 로고    scopus 로고
    • The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of Prasinophytes and the origin of the secondary chloroplasts of Euglenids
    • Turmel M, Gagnon M-C, O'Kelly CJ, Otis C, Lemieux C (2009) The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of Prasinophytes and the origin of the secondary chloroplasts of Euglenids. Mol Biol Evol 26: 632-648.
    • (2009) Mol Biol Evol , vol.26 , pp. 632-648
    • Turmel, M.1    Gagnon, M.-C.2    O'Kelly, C.J.3    Otis, C.4    Lemieux, C.5
  • 92
    • 33745501987 scopus 로고    scopus 로고
    • The Mimulus moschatus Alliance (Phrymaceae): molecular and morphological phylogenetics and their conservation implications
    • Whittall JB, Carlosn ML, Beardsley PM, Meinke RJ, Liston A (2006) The Mimulus moschatus Alliance (Phrymaceae): molecular and morphological phylogenetics and their conservation implications. Syst Bot 31: 380-397.
    • (2006) Syst Bot , vol.31 , pp. 380-397
    • Whittall, J.B.1    Carlosn, M.L.2    Beardsley, P.M.3    Meinke, R.J.4    Liston, A.5
  • 93
    • 0032225748 scopus 로고    scopus 로고
    • Does adding characters with missing data increase or decrease phylogenetic accuracy?
    • Wiens JJ (1998) Does adding characters with missing data increase or decrease phylogenetic accuracy? Syst Biol 47: 625-640.
    • (1998) Syst Biol , vol.47 , pp. 625-640
    • Wiens, J.J.1
  • 94
    • 0041592696 scopus 로고    scopus 로고
    • Incomplete taxa, incomplete characters, and phylogenetic accuracy: is there a missing data problem?
    • Wiens JJ (2003a) Incomplete taxa, incomplete characters, and phylogenetic accuracy: is there a missing data problem? J Vertebr Paleontol 23: 297-310.
    • (2003) J Vertebr Paleontol , vol.23 , pp. 297-310
    • Wiens, J.J.1
  • 95
    • 0042905752 scopus 로고    scopus 로고
    • Missing data, incomplete taxa, and phylogenetic accuracy
    • Wiens JJ (2003b) Missing data, incomplete taxa, and phylogenetic accuracy. Syst Biol 52: 528-538.
    • (2003) Syst Biol , vol.52 , pp. 528-538
    • Wiens, J.J.1
  • 96
    • 30344464074 scopus 로고    scopus 로고
    • Can Incomplete taxa rescue phylogenetic analyses from long-branch attraction?
    • Wiens JJ (2005) Can Incomplete taxa rescue phylogenetic analyses from long-branch attraction? Syst Biol 54: 731-742.
    • (2005) Syst Biol , vol.54 , pp. 731-742
    • Wiens, J.J.1
  • 97
    • 31344471014 scopus 로고    scopus 로고
    • Missing data and the design of phylogenetic analyses
    • Wiens JJ (2006) Missing data and the design of phylogenetic analyses. J Biomed Inform 39: 34-42.
    • (2006) J Biomed Inform , vol.39 , pp. 34-42
    • Wiens, J.J.1
  • 98
    • 0029466830 scopus 로고
    • Combining data sets with different numbers of taxa for phylogenetic analysis
    • Wiens JJ, Reeder TW (1995) Combining data sets with different numbers of taxa for phylogenetic analysis. Syst Biol 44: 548-558.
    • (1995) Syst Biol , vol.44 , pp. 548-558
    • Wiens, J.J.1    Reeder, T.W.2
  • 99
    • 0029498439 scopus 로고
    • Coping with abundant missing entries in phylogenetic inference using parsimony
    • Wilkinson M (1995) Coping with abundant missing entries in phylogenetic inference using parsimony. Syst Biol 44: 501-514.
    • (1995) Syst Biol , vol.44 , pp. 501-514
    • Wilkinson, M.1
  • 100
    • 0028011417 scopus 로고
    • Relationships of Droseraceae: a cladistic analysis of rbcL sequence and morphological data
    • Williams SE, Albert VA, Chase MW (1994) Relationships of Droseraceae: a cladistic analysis of rbcL sequence and morphological data. Am J Bot 81: 1027-1037.
    • (1994) Am J Bot , vol.81 , pp. 1027-1037
    • Williams, S.E.1    Albert, V.A.2    Chase, M.W.3
  • 101
    • 69149098028 scopus 로고    scopus 로고
    • Phylogenetic relationships among the recognized series in Iris section Limniris
    • Wilson CA (2009) Phylogenetic relationships among the recognized series in Iris section Limniris. Syst Bot 34: 277-284.
    • (2009) Syst Bot , vol.34 , pp. 277-284
    • Wilson, C.A.1
  • 102
    • 0030805226 scopus 로고    scopus 로고
    • Evaluation of atpB nucleotide sequences for phylogenetic studies of ferns and other pteridophytes
    • Wolf PG (1997) Evaluation of atpB nucleotide sequences for phylogenetic studies of ferns and other pteridophytes. Am J Bot 84: 1429-1440.
    • (1997) Am J Bot , vol.84 , pp. 1429-1440
    • Wolf, P.G.1
  • 103
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl DJ, Hillis DM (2002) Increased taxon sampling greatly reduces phylogenetic error. Syst Biol 51: 588-598.
    • (2002) Syst Biol , vol.51 , pp. 588-598
    • Zwickl, D.J.1    Hillis, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.