메뉴 건너뛰기




Volumn 50, Issue 6, 2001, Pages 970-978

Complexity of the likelihood surface for a large DNA dataset

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 0035527401     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/106351501753462902     Document Type: Review
Times cited : (29)

References (21)
  • 1
    • 0002875467 scopus 로고
    • A computationally efficient approximation to the nearest neighbor interchange metric
    • BROWN, E., AND W. DAY. 1984. A computationally efficient approximation to the nearest neighbor interchange metric. J. Classif. 1:93-124.
    • (1984) J. Classif. , vol.1 , pp. 93-124
    • Brown, E.1    Day, W.2
  • 2
    • 0026757412 scopus 로고
    • Phylogenetic analysis of 48 papillomavirus types and 28 subtypes and variants: A showcase for the molecular evolution of DNA viruses
    • CHAN, S., H. BERNARD, S. ONG, S. CHAN, B. HOFMANN, AND H. DELIUS. 1992. Phylogenetic analysis of 48 papillomavirus types and 28 subtypes and variants: A showcase for the molecular evolution of DNA viruses. J. Virol. 66:5714-5725.
    • (1992) J. Virol. , vol.66 , pp. 5714-5725
    • Chan, S.1    Bernard, H.2    Ong, S.3    Chan, S.4    Hofmann, B.5    Delius, H.6
  • 3
    • 0028926716 scopus 로고
    • Analysis of genomic sequences of 95 papillomavirus types: Uniting typing, phylogeny, and taxonomy
    • CHAN, S., H. DELIUS, A. HALPERN, AND H. BERNARD. 1995. Analysis of genomic sequences of 95 papillomavirus types: Uniting typing, phylogeny, and taxonomy. J. Virol. 69:3074-3083.
    • (1995) J. Virol. , vol.69 , pp. 3074-3083
    • Chan, S.1    Delius, H.2    Halpern, A.3    Bernard, H.4
  • 4
    • 0030588055 scopus 로고    scopus 로고
    • Full reconstruction of markov models on evolutionary trees: Identifiability and consistency
    • CHANG, J. 1996. Full reconstruction of Markov models on evolutionary trees: identifiability and consistency. Math. Bio. 137:51-73.
    • (1996) Math. Bio. , vol.137 , pp. 51-73
    • Chang, J.1
  • 5
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 6
    • 0021581577 scopus 로고
    • Distance methods for inferring phylogenies: A justification
    • FELSENSTEIN, J. 1984. Distance methods for inferring phylogenies: A justification. Evolution 38:16-24.
    • (1984) Evolution , vol.38 , pp. 16-24
    • Felsenstein, J.1
  • 8
    • 0027526039 scopus 로고
    • Statistical tests of models of DNA substitution
    • GOLDMAN, N. 1993. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:182-198.
    • (1993) J. Mol. Evol. , vol.36 , pp. 182-198
    • Goldman, N.1
  • 9
    • 0025873443 scopus 로고
    • On the maximum likelihood method in molecular phylogenetics
    • HASEGAWA, M., H. KISHINO, AND N. SAITOU. 1991. On the maximum likelihood method in molecular phylogenetics. J. Mol. Evol. 32:443-545.
    • (1991) J. Mol. Evol. , vol.32 , pp. 443-545
    • Hasegawa, M.1    Kishino, H.2    Saitou, N.3
  • 10
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • KISHINO, H., AND M. HASEGAWA. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 11
    • 0031892789 scopus 로고    scopus 로고
    • A genetic algorithm for maximumlikelihood phylogeny inference using nucleotide sequence data
    • LEWIS, P. 1998. A genetic algorithm for maximumlikelihood phylogeny inference using nucleotide sequence data. Mol. Biol. Evol. 15:277-283.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 277-283
    • Lewis, P.1
  • 12
    • 84960569058 scopus 로고
    • The discovery and importance of multiple islands of most-parsimonious trees
    • MADDISON, D. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Syst. Zool. 40:315-328.
    • (1991) Syst. Zool. , vol.40 , pp. 315-328
    • Maddison, D.1
  • 13
    • 0031055633 scopus 로고    scopus 로고
    • Elucidating the population histories and transmission dynamics of papillomaviruses using phylogenetic trees
    • ONG, C., S. NEE, A. RAMBAUT, H. BERNARD, AND P. HARVEY. 1997. Elucidating the population histories and transmission dynamics of papillomaviruses using phylogenetic trees. J. Mol. Evol. 44:199-206.
    • (1997) J. Mol. Evol. , vol.44 , pp. 199-206
    • Ong, C.1    Nee, S.2    Rambaut, A.3    Bernard, H.4    Harvey, P.5
  • 14
    • 12044255161 scopus 로고
    • On islands of trees and the efficacy of different methods of branch swapping in finding most-parsimonious trees
    • PAGE, R. 1993. On islands of trees and the efficacy of different methods of branch swapping in finding most-parsimonious trees. Syst. Biol. 42:200-210.
    • (1993) Syst. Biol. , vol.42 , pp. 200-210
    • Page, R.1
  • 16
    • 0031284363 scopus 로고    scopus 로고
    • On the consistency of maximum likelihood estimation of phylogenetic trees from nucleotide sequences
    • ROGERS, J. 1997. On the consistency of maximum likelihood estimation of phylogenetic trees from nucleotide sequences. Syst. Biol. 46:354-357.
    • (1997) Syst. Biol. , vol.46 , pp. 354-357
  • 18
    • 0035527377 scopus 로고    scopus 로고
    • Stochastic search strategy for estimation of maximum likelihood phylogenetic trees
    • SALTER, L., AND D. PEARL. 2001. Stochastic search strategy for estimation of maximum likelihood phylogenetic trees. Syst. Biol. 50:7-17.
    • (2001) Syst. Biol. , vol.50 , pp. 7-17
    • Salter, L.1    Pearl, D.2
  • 19
    • 0034351397 scopus 로고    scopus 로고
    • Parametric phylogenetics?
    • SANDERSON, M., AND J. KIM. 2000. Parametric phylogenetics? Syst. Biol. 49:817-829.
    • (2000) Syst. Biol. , vol.49 , pp. 817-829
    • Sanderson, M.1    Kim, J.2
  • 21
    • 12044257838 scopus 로고
    • Statistical properties of the maximum likelihood method of phylogenetic estimation and comparison with distance matrix methods
    • YANG, Z. 1994. Statistical properties of the maximum likelihood method of phylogenetic estimation and comparison with distance matrix methods. Syst. Biol. 43:329-342.
    • (1994) Syst. Biol. , vol.43 , pp. 329-342
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.