메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages

Transcriptome analysis of genes involved in defence response in Polyporus umbellatus with Armillaria mellea infection

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONE; FUNGAL RNA; TRANSCRIPTOME;

EID: 84946600208     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep16075     Document Type: Article
Times cited : (46)

References (56)
  • 1
    • 79961032488 scopus 로고    scopus 로고
    • Innate immunity in rice
    • Chen, X. and Ronald, P. C. Innate immunity in rice. Trends Plant Sci 16, 451-9 (2011).
    • (2011) Trends Plant Sci , vol.16 , pp. 451-459
    • Chen, X.1    Ronald, P.C.2
  • 2
    • 77955089384 scopus 로고    scopus 로고
    • Recent advances in rice blast effector research
    • Valent, B. and Khang, C. H. Recent advances in rice blast effector research. Curr Opin Plant Biol 13, 434-41 (2010).
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 434-441
    • Valent, B.1    Khang, C.H.2
  • 3
    • 60749094240 scopus 로고    scopus 로고
    • Under pressure: Investigating the biology of plant infection by Magnaporthe oryzae
    • Wilson, R. A. and Talbot, N. J. Under pressure: investigating the biology of plant infection by Magnaporthe oryzae. Nat Rev Microbiol 7, 185-95 (2009).
    • (2009) Nat Rev Microbiol , vol.7 , pp. 185-195
    • Wilson, R.A.1    Talbot, N.J.2
  • 4
    • 84880398200 scopus 로고    scopus 로고
    • Transcriptome analysis and discovery of genes involved in immune pathways from hepatopancreas of microbial challenged mitten crab Eriocheir sinensis
    • Li, X., Cui, Z., Liu, Y., Song, C. and Shi, G. Transcriptome analysis and discovery of genes involved in immune pathways from hepatopancreas of microbial challenged mitten crab Eriocheir sinensis. PLoS One 8, e68233 (2013).
    • (2013) PLoS One , vol.8 , pp. e68233
    • Li, X.1    Cui, Z.2    Liu, Y.3    Song, C.4    Shi, G.5
  • 5
    • 84891793137 scopus 로고    scopus 로고
    • Transcriptome analysis of Portunus trituberculatus in response to salinity stress provides insights into the molecular basis of osmoregulation
    • Lv, J. et al. Transcriptome analysis of Portunus trituberculatus in response to salinity stress provides insights into the molecular basis of osmoregulation. PLoS One 8, e82155 (2013).
    • (2013) PLoS One , vol.8 , pp. e82155
    • Lv, J.1
  • 6
    • 84934882067 scopus 로고    scopus 로고
    • Oxalic acid and sclerotial differentiation of Polyporus umbellatus
    • Xing, Y. M., Yin, W. Q., Liu, M. M., Wang, C. L. and Guo, S. X. Oxalic acid and sclerotial differentiation of Polyporus umbellatus. Sci Rep 5, 10759 (2015).
    • (2015) Sci Rep , vol.5 , pp. 10759
    • Xing, Y.M.1    Yin, W.Q.2    Liu, M.M.3    Wang, C.L.4    Guo, S.X.5
  • 7
    • 84874287219 scopus 로고    scopus 로고
    • Sclerotial formation of Polyporus umbellatus by low temperature treatment under artificial conditions
    • Xing, Y. M. et al. Sclerotial formation of Polyporus umbellatus by low temperature treatment under artificial conditions. PLoS One 8, e56190 (2013).
    • (2013) PLoS One , vol.8 , pp. e56190
    • Xing, Y.M.1
  • 8
    • 0012141759 scopus 로고
    • Genesis and function of defense structure of sclerotia of Grifola umbellata after Armillaria mellea infection
    • (in Chinses)
    • Guo, S.-X. and Xu, J.-T. Genesis and function of defense structure of sclerotia of Grifola umbellata after Armillaria mellea infection. Acta Mycol Sin 12, 283-288 (1993). (in Chinses)
    • (1993) Acta Mycol Sin , vol.12 , pp. 283-288
    • Guo, S.-X.1    Xu, J.-T.2
  • 9
    • 77955903346 scopus 로고    scopus 로고
    • Sequence-based identification of Japanese Armillaria species using the elongation factor-1 alpha gene
    • Hasegawa, E., Ota, Y., Hattori, T. and Kikuchi, T. Sequence-based identification of Japanese Armillaria species using the elongation factor-1 alpha gene. Mycologia 102, 898-910 (2010).
    • (2010) Mycologia , vol.102 , pp. 898-910
    • Hasegawa, E.1    Ota, Y.2    Hattori, T.3    Kikuchi, T.4
  • 10
    • 0012216187 scopus 로고
    • Genic microsatellite markers in plants: Features and applications
    • (in Chinses)
    • Guo, S.-X. and Xu, J.-T. Genic microsatellite markers in plants: features and applications. Acta Bot Sin 35, 44-50 (1993). (in Chinses)
    • (1993) Acta Bot Sin , vol.35 , pp. 44-50
    • Guo, S.-X.1    Xu, J.-T.2
  • 11
    • 23744516546 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in leaf and root between wheat hybrid and its parental inbreds using PCR-based cDNA subtraction
    • Yao, Y. et al. Identification of differentially expressed genes in leaf and root between wheat hybrid and its parental inbreds using PCR-based cDNA subtraction. Plant Mol Biol 58, 367-84 (2005).
    • (2005) Plant Mol Biol , vol.58 , pp. 367-384
    • Yao, Y.1
  • 12
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni, J. C., Mason, C. E., Mane, S. M., Stephens, M. and Gilad, Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18, 1509-17 (2008).
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 13
    • 84880184527 scopus 로고    scopus 로고
    • De novo sequencing and transcriptome analysis of the desert shrub Ammopiptanthus mongolicus during cold acclimation using Illumina/Solexa
    • Pang, T., Ye, C. Y., Xia, X. and Yin, W. De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa. BMC Genomics 14, 488 (2013).
    • (2013) BMC Genomics , vol.14 , pp. 488
    • Pang, T.1    Ye, C.Y.2    Xia, X.3    Yin, W.4
  • 14
    • 84870316759 scopus 로고    scopus 로고
    • Gene expression profiling of soybean leaves and roots under salt, saline-alkali and drought stress by highthroughput Illumina sequencing
    • Fan, X. D. et al. Gene expression profiling of soybean leaves and roots under salt, saline-alkali and drought stress by highthroughput Illumina sequencing. Gene 512, 392-402 (2013).
    • (2013) Gene , vol.512 , pp. 392-402
    • Fan, X.D.1
  • 15
    • 84880204334 scopus 로고    scopus 로고
    • Analysis of the alfalfa root transcriptome in response to salinity stress
    • Postnikova, O. A., Shao, J. and Nemchinov, L. G. Analysis of the alfalfa root transcriptome in response to salinity stress. Plant Cell Physiol 54, 1041-55 (2013).
    • (2013) Plant Cell Physiol , vol.54 , pp. 1041-1055
    • Postnikova, O.A.1    Shao, J.2    Nemchinov, L.G.3
  • 16
    • 84920494605 scopus 로고    scopus 로고
    • De novo assembly and discovery of genes that are involved in drought tolerance in Tibetan Sophora moorcroftiana
    • Li, H., Yao, W., Fu, Y., Li, S. and Guo, Q. De novo assembly and discovery of genes that are involved in drought tolerance in Tibetan Sophora moorcroftiana. PLoS One 10, e111054 (2015).
    • (2015) PLoS One , vol.10 , pp. e111054
    • Li, H.1    Yao, W.2    Fu, Y.3    Li, S.4    Guo, Q.5
  • 17
    • 84863771812 scopus 로고    scopus 로고
    • Gene expression profiling of Sinapis alba leaves under drought stress and rewatering growth conditions with Illumina deep sequencing
    • Dong, C. H. et al. Gene expression profiling of Sinapis alba leaves under drought stress and rewatering growth conditions with Illumina deep sequencing. Mol Biol Rep 39, 5851-7 (2012).
    • (2012) Mol Biol Rep , vol.39 , pp. 5851-5857
    • Dong, C.H.1
  • 18
    • 1342311369 scopus 로고    scopus 로고
    • Identification of the biological species of Armillaria associated with Wynnea and Entoloma abortivum using PCR-RFLP analysis of the intergenic region (IGR) of ribosomal DNA
    • Fukuda, M., Nakashima, E., Hayashi, K. and Nagasawa, E. Identification of the biological species of Armillaria associated with Wynnea and Entoloma abortivum using PCR-RFLP analysis of the intergenic region (IGR) of ribosomal DNA. Mycol Res 107, 1435-41 (2003).
    • (2003) Mycol Res , vol.107 , pp. 1435-1441
    • Fukuda, M.1    Nakashima, E.2    Hayashi, K.3    Nagasawa, E.4
  • 19
    • 0033057848 scopus 로고    scopus 로고
    • Heat-shock proteins, molecular chaperones, and the stress response: Evolutionary and ecological physiology
    • Feder, M. E. and Hofmann, G. E. Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology. Annu Rev Physiol 61, 243-82 (1999).
    • (1999) Annu Rev Physiol , vol.61 , pp. 243-282
    • Feder, M.E.1    Hofmann, G.E.2
  • 20
    • 0028173175 scopus 로고
    • Hsp70 in parasites: As an inducible protective protein and as an antigen
    • Maresca, B. and Kobayashi, G. S. Hsp70 in parasites: as an inducible protective protein and as an antigen. Experientia 50, 1067-74 (1994).
    • (1994) Experientia , vol.50 , pp. 1067-1074
    • Maresca, B.1    Kobayashi, G.S.2
  • 21
    • 0026726575 scopus 로고
    • The cellular immune response to heat shock proteins
    • Kaufmann, S. H. The cellular immune response to heat shock proteins. Experientia 48, 640-3 (1992).
    • (1992) Experientia , vol.48 , pp. 640-643
    • Kaufmann, S.H.1
  • 22
    • 0025894722 scopus 로고
    • Heat shock proteins in host-parasite interactions
    • Polla, B. S. Heat shock proteins in host-parasite interactions. Immunol Today 12, A38-41 (1991).
    • (1991) Immunol Today , vol.12 , pp. A38-41
    • Polla, B.S.1
  • 23
    • 0034103726 scopus 로고    scopus 로고
    • Arabidopsis RTM2 gene is necessary for specific restriction of tobacco etch virus and encodes an unusual small heat shock-like protein
    • Whitham, S. A., Anderberg, R. J., Chisholm, S. T. and Carrington, J. C. Arabidopsis RTM2 gene is necessary for specific restriction of tobacco etch virus and encodes an unusual small heat shock-like protein. Plant Cell 12, 569-82 (2000).
    • (2000) Plant Cell , vol.12 , pp. 569-582
    • Whitham, S.A.1    Anderberg, R.J.2    Chisholm, S.T.3    Carrington, J.C.4
  • 24
    • 82955168456 scopus 로고    scopus 로고
    • Suppression of plant-generated reactive oxygen species is required for successful infection by the rice blast fungus
    • Huang, K., Czymmek, K. J., Caplan, J. L., Sweigard, J. A. and Donofrio, N. M. Suppression of plant-generated reactive oxygen species is required for successful infection by the rice blast fungus. Virulence 2, 559-62 (2011).
    • (2011) Virulence , vol.2 , pp. 559-562
    • Huang, K.1    Czymmek, K.J.2    Caplan, J.L.3    Sweigard, J.A.4    Donofrio, N.M.5
  • 25
    • 77949535960 scopus 로고    scopus 로고
    • Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses
    • Mustroph, A. et al. Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Plant Physiol 152, 1484-500 (2010).
    • (2010) Plant Physiol , vol.152 , pp. 1484-1500
    • Mustroph, A.1
  • 26
    • 84892485947 scopus 로고    scopus 로고
    • Signalling C-type lectin receptors, microbial recognition and immunity
    • Hoving, J. C., Wilson, G. J. and Brown, G. D. Signalling C-type lectin receptors, microbial recognition and immunity. Cell Microbiol 16, 185-94 (2014).
    • (2014) Cell Microbiol , vol.16 , pp. 185-194
    • Hoving, J.C.1    Wilson, G.J.2    Brown, G.D.3
  • 27
    • 84885854380 scopus 로고    scopus 로고
    • Fungal lectins: Structure, function and potential applications
    • Varrot, A., Basheer, S. M. and Imberty, A. Fungal lectins: structure, function and potential applications. Curr Opin Struct Biol 23, 678-85 (2013).
    • (2013) Curr Opin Struct Biol , vol.23 , pp. 678-685
    • Varrot, A.1    Basheer, S.M.2    Imberty, A.3
  • 28
    • 84874388735 scopus 로고    scopus 로고
    • High entomotoxicity and mechanism of the fungal GalNAc/Gal-specific Rhizoctonia solani lectin in pest insects
    • Hamshou, M. et al. High entomotoxicity and mechanism of the fungal GalNAc/Gal-specific Rhizoctonia solani lectin in pest insects. J Insect Physiol 59, 295-305 (2013).
    • (2013) J Insect Physiol , vol.59 , pp. 295-305
    • Hamshou, M.1
  • 29
    • 78649631777 scopus 로고    scopus 로고
    • Insecticidal properties of Sclerotinia sclerotiorum agglutinin and its interaction with insect tissues and cells
    • Hamshou, M. et al. Insecticidal properties of Sclerotinia sclerotiorum agglutinin and its interaction with insect tissues and cells. Insect Biochem Mol Biol 40, 883-90 (2010).
    • (2010) Insect Biochem Mol Biol , vol.40 , pp. 883-890
    • Hamshou, M.1
  • 30
    • 0037336601 scopus 로고    scopus 로고
    • Greenhouse and field testing of transgenic wheat plants stably expressing genes for thaumatin-like protein, chitinase and glucanase against Fusarium graminearum
    • Anand, A. et al. Greenhouse and field testing of transgenic wheat plants stably expressing genes for thaumatin-like protein, chitinase and glucanase against Fusarium graminearum. J Exp Bot 54, 1101-11 (2003).
    • (2003) J Exp Bot , vol.54 , pp. 1101-1111
    • Anand, A.1
  • 31
    • 0034989068 scopus 로고    scopus 로고
    • Heterologous expression of genes mediating enhanced fungal resistance in transgenic wheat
    • Oldach, K. H., Becker, D. and Lorz, H. Heterologous expression of genes mediating enhanced fungal resistance in transgenic wheat. Mol Plant Microbe Interact 14, 832-8 (2001).
    • (2001) Mol Plant Microbe Interact , vol.14 , pp. 832-838
    • Oldach, K.H.1    Becker, D.2    Lorz, H.3
  • 32
    • 84908473377 scopus 로고    scopus 로고
    • The galU gene of Xanthomonas campestris pv. Campestris is involved in bacterial attachment, cell motility, polysaccharide synthesis, virulence, and tolerance to various stresses
    • Liao, C. T., Du, S. C., Lo, H. H. and Hsiao, Y. M. The galU gene of Xanthomonas campestris pv. campestris is involved in bacterial attachment, cell motility, polysaccharide synthesis, virulence, and tolerance to various stresses. Arch Microbiol 196, 729-38 (2014).
    • (2014) Arch Microbiol , vol.196 , pp. 729-738
    • Liao, C.T.1    Du, S.C.2    Lo, H.H.3    Hsiao, Y.M.4
  • 33
    • 34748873304 scopus 로고    scopus 로고
    • The cell wall: A carbohydrate armour for the fungal cell
    • Latge, J. P. The cell wall: a carbohydrate armour for the fungal cell. Mol Microbiol 66, 279-90 (2007).
    • (2007) Mol Microbiol , vol.66 , pp. 279-290
    • Latge, J.P.1
  • 34
    • 37549032798 scopus 로고    scopus 로고
    • Conserved processes and lineage-specific proteins in fungal cell wall evolution
    • Coronado, J. E., Mneimneh, S., Epstein, S. L., Qiu, W. G. and Lipke, P. N. Conserved processes and lineage-specific proteins in fungal cell wall evolution. Eukaryot Cell 6, 2269-77 (2007).
    • (2007) Eukaryot Cell , vol.6 , pp. 2269-2277
    • Coronado, J.E.1    Mneimneh, S.2    Epstein, S.L.3    Qiu, W.G.4    Lipke, P.N.5
  • 35
    • 4344713045 scopus 로고    scopus 로고
    • Fungal cell wall chitinases and glucanases
    • Adams, D. J. Fungal cell wall chitinases and glucanases. Microbiology 150, 2029-35 (2004).
    • (2004) Microbiology , vol.150 , pp. 2029-2035
    • Adams, D.J.1
  • 36
    • 84881003350 scopus 로고    scopus 로고
    • Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum
    • Andersson, K. M. et al. Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum. Appl Environ Microbiol 79, 4993-5004 (2013).
    • (2013) Appl Environ Microbiol , vol.79 , pp. 4993-5004
    • Andersson, K.M.1
  • 37
    • 33745198422 scopus 로고    scopus 로고
    • Calcium in plant defence-signalling pathways
    • Lecourieux, D., Ranjeva, R. and Pugin, A. Calcium in plant defence-signalling pathways. New Phytol 171, 249-69 (2006).
    • (2006) New Phytol , vol.171 , pp. 249-269
    • Lecourieux, D.1    Ranjeva, R.2    Pugin, A.3
  • 38
    • 79954619891 scopus 로고    scopus 로고
    • Ca2+ conduction by plant cyclic nucleotide gated channels and associated signaling components in pathogen defense signal transduction cascades
    • Ma, W. and Berkowitz, G. A. Ca2+ conduction by plant cyclic nucleotide gated channels and associated signaling components in pathogen defense signal transduction cascades. New Phytol 190, 566-72 (2011).
    • (2011) New Phytol , vol.190 , pp. 566-572
    • Ma, W.1    Berkowitz, G.A.2
  • 39
    • 62149113555 scopus 로고    scopus 로고
    • A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat
    • Krattinger, S. G. et al. A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat. Science 323, 1360-3 (2009).
    • (2009) Science , vol.323 , pp. 1360-1363
    • Krattinger, S.G.1
  • 40
    • 10444285332 scopus 로고    scopus 로고
    • Multidrug resistance in yeast Candida
    • Prasad, R. and Kapoor, K. Multidrug resistance in yeast Candida. Int Rev Cytol 242, 215-48 (2005).
    • (2005) Int Rev Cytol , vol.242 , pp. 215-248
    • Prasad, R.1    Kapoor, K.2
  • 41
    • 0031663427 scopus 로고    scopus 로고
    • A novel ATP-binding cassette transporter involved in multidrug resistance in the phytopathogenic fungus Penicillium digitatum
    • Nakaune, R. et al. A novel ATP-binding cassette transporter involved in multidrug resistance in the phytopathogenic fungus Penicillium digitatum. Appl Environ Microbiol 64, 3983-8 (1998).
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3983-3988
    • Nakaune, R.1
  • 42
    • 48249157893 scopus 로고    scopus 로고
    • Oxylipin signaling in plant stress responses
    • Eckardt, N. A. Oxylipin signaling in plant stress responses. Plant Cell 20, 495-7 (2008).
    • (2008) Plant Cell , vol.20 , pp. 495-497
    • Eckardt, N.A.1
  • 43
    • 84928659150 scopus 로고    scopus 로고
    • Identification of Arabidopsis candidate genes in response to biotic and abiotic stresses using comparative microarrays
    • Sham, A. et al. Identification of Arabidopsis candidate genes in response to biotic and abiotic stresses using comparative microarrays. PLoS One 10, e0125666 (2015).
    • (2015) PLoS One , vol.10 , pp. e0125666
    • Sham, A.1
  • 44
    • 84899784816 scopus 로고    scopus 로고
    • Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.)
    • Mishra, A. K., Muthamilarasan, M., Khan, Y., Parida, S. K. and Prasad, M. Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.). PLoS One 9, e86852 (2014).
    • (2014) PLoS One , vol.9 , pp. e86852
    • Mishra, A.K.1    Muthamilarasan, M.2    Khan, Y.3    Parida, S.K.4    Prasad, M.5
  • 45
    • 42449092033 scopus 로고    scopus 로고
    • Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance
    • Zhu, J. et al. Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance. Proc Natl Acad Sci USA 105, 4945-50 (2008).
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 4945-4950
    • Zhu, J.1
  • 46
    • 52949127958 scopus 로고    scopus 로고
    • SRWD: A novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)
    • Huang, J. et al. SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.). Gene 424, 71-9 (2008).
    • (2008) Gene , vol.424 , pp. 71-79
    • Huang, J.1
  • 47
    • 84875592570 scopus 로고    scopus 로고
    • Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction
    • Kawahara, Y. et al. Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction. PLoS One 7, e49423 (2012).
    • (2012) PLoS One , vol.7 , pp. e49423
    • Kawahara, Y.1
  • 48
    • 84860657698 scopus 로고    scopus 로고
    • Fungal species residing in the sclerotia of Polyporus umbellatus
    • Xing, X., Ma, X. and Guo, S. Fungal species residing in the sclerotia of Polyporus umbellatus. Symbiosis 56, 19-24 (2012).
    • (2012) Symbiosis , vol.56 , pp. 19-24
    • Xing, X.1    Ma, X.2    Guo, S.3
  • 49
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. and Salzberg, S. L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25 (2009).
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 50
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29, 644-52 (2011).
    • (2011) Nat Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 51
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li, B. and Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323 (2011).
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 52
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. and Huber, W. Differential expression analysis for sequence count data. Genome Biol 11, R106 (2010).
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 53
    • 77953212372 scopus 로고    scopus 로고
    • Gene ontology analysis for RNA-seq: Accounting for selection bias
    • Young, M. D., Wakefield, M. J., Smyth, G. K. and Oshlack, A. Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol 11, R14 (2010).
    • (2010) Genome Biol , vol.11 , pp. R14
    • Young, M.D.1    Wakefield, M.J.2    Smyth, G.K.3    Oshlack, A.4
  • 54
    • 38549126643 scopus 로고    scopus 로고
    • KEGG for linking genomes to life and the environment
    • Kanehisa, M. et al. KEGG for linking genomes to life and the environment. Nucleic Acids Res 36, D480-4 (2008).
    • (2008) Nucleic Acids Res , vol.36 , pp. D480-D484
    • Kanehisa, M.1
  • 55
    • 27544472676 scopus 로고    scopus 로고
    • Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
    • Mao, X., Cai, T., Olyarchuk, J. G. and Wei, L. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics 21, 3787-93 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 3787-3793
    • Mao, X.1    Cai, T.2    Olyarchuk, J.G.3    Wei, L.4
  • 56
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak, K. J. and Schmittgen, T. D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25, 402-8 (2001).
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.