-
1
-
-
0035839136
-
Translating the histone code
-
Jenuwein T, Allis CD (2001) Translating the histone code. Science 293:1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
2
-
-
0034387004
-
25 years after the nucleosome model: Chromatin modifications
-
Wu J, Grunstein M (2000) 25 years after the nucleosome model: Chromatin modifications. Trends Biochem Sci 25:619-623.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 619-623
-
-
Wu, J.1
Grunstein, M.2
-
3
-
-
0033568312
-
ATP-dependent remodeling and acetylation as regulators of chromatin fluidity
-
Kingston RE, Narlikar GJ (1999) ATP-dependent remodeling and acetylation as regulators of chromatin fluidity. Genes Dev 13:2339-2352.
-
(1999)
Genes Dev
, vol.13
, pp. 2339-2352
-
-
Kingston, R.E.1
Narlikar, G.J.2
-
5
-
-
0032030770
-
Histone acetylation and transcriptional regulatory mechanisms
-
Struhl K (1998) Histone acetylation and transcriptional regulatory mechanisms. Genes Dev 12:599-606.
-
(1998)
Genes Dev
, vol.12
, pp. 599-606
-
-
Struhl, K.1
-
6
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature 403:41-45.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
7
-
-
0035499392
-
Transcriptional repression: The long and the short of it
-
Courey AJ, Jia S (2001) Transcriptional repression: The long and the short of it. Genes Dev 15:2786-2796.
-
(2001)
Genes Dev
, vol.15
, pp. 2786-2796
-
-
Courey, A.J.1
Jia, S.2
-
8
-
-
0034650893
-
The coregulator exchange in transcriptional functions of nuclear receptors
-
Glass CK, Rosenfeld MG (2000) The coregulator exchange in transcriptional functions of nuclear receptors. Genes Dev 14:121-141.
-
(2000)
Genes Dev
, vol.14
, pp. 121-141
-
-
Glass, C.K.1
Rosenfeld, M.G.2
-
9
-
-
0037084392
-
Biological roles and mechanistic actions of corepressor complexes
-
Jepsen K, Rosenfeld MG (2002) Biological roles and mechanistic actions of corepressor complexes. J Cell Sci 115:689-698.
-
(2002)
J Cell Sci
, vol.115
, pp. 689-698
-
-
Jepsen, K.1
Rosenfeld, M.G.2
-
10
-
-
29544445027
-
Chromatin modifiers that control plant development
-
Reyes JC (2006) Chromatin modifiers that control plant development. Curr Opin Plant Biol 9:21-27.
-
(2006)
Curr Opin Plant Biol
, vol.9
, pp. 21-27
-
-
Reyes, J.C.1
-
11
-
-
0345826148
-
Vernalization requires epigenetic silencing of FLC by histone methylation
-
Bastow R, et al. (2004) Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 427:164-167.
-
(2004)
Nature
, vol.427
, pp. 164-167
-
-
Bastow, R.1
-
12
-
-
0347717907
-
Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3
-
Sung S, Amasino RM (2004) Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3. Nature 427:159-164.
-
(2004)
Nature
, vol.427
, pp. 159-164
-
-
Sung, S.1
Amasino, R.M.2
-
13
-
-
0031277694
-
Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: Interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways
-
Ishitani M, Xiong L, Stevenson B, Zhu J-K (1997) Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: Interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. Plant Cell 9:1935-1949.
-
(1997)
Plant Cell
, vol.9
, pp. 1935-1949
-
-
Ishitani, M.1
Xiong, L.2
Stevenson, B.3
Zhu, J.-K.4
-
14
-
-
3042711793
-
An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway
-
Zhu J, et al. (2004) An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. Proc Natl Acad Sci USA 101:9873-9878.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9873-9878
-
-
Zhu, J.1
-
15
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, et al. (2004) Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol 5:R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
-
16
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3:1-25.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
, pp. 1-25
-
-
Smyth, G.K.1
-
17
-
-
10844290766
-
A model based background adjustment for oligonucleotide expression arrays
-
Wu Z, Irizarry RA, Gentleman R, Martinez Murillo F, Spencer F (2004) A model based background adjustment for oligonucleotide expression arrays. J Am Stat Assoc 99:909-917.
-
(2004)
J Am Stat Assoc
, vol.99
, pp. 909-917
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.3
Martinez Murillo, F.4
Spencer, F.5
-
18
-
-
0036671216
-
Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
-
Fowler S, Thomashow MF (2002) Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 14:1675-1690.
-
(2002)
Plant Cell
, vol.14
, pp. 1675-1690
-
-
Fowler, S.1
Thomashow, M.F.2
-
19
-
-
0036909761
-
Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
-
Kreps JA, et al. (2002) Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol 130:2129-2141.
-
(2002)
Plant Physiol
, vol.130
, pp. 2129-2141
-
-
Kreps, J.A.1
-
20
-
-
0038119993
-
Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures
-
Provart NJ, et al. (2003) Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures. Plant Physiol 132:893-906.
-
(2003)
Plant Physiol
, vol.132
, pp. 893-906
-
-
Provart, N.J.1
-
21
-
-
33645974276
-
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1
-
Lee BH, Henderson DA, Zhu, J-K (2005) The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell 17:3155-3175.
-
(2005)
Plant Cell
, vol.17
, pp. 3155-3175
-
-
Lee, B.H.1
Henderson, D.A.2
Zhu, J.-K.3
-
22
-
-
12844280128
-
Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis
-
Vogel JT, Zarka DG, Van Buskirk HA, Fowler SG, Thomashow MF (2005) Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J 41:195-211.
-
(2005)
Plant J
, vol.41
, pp. 195-211
-
-
Vogel, J.T.1
Zarka, D.G.2
Van Buskirk, H.A.3
Fowler, S.G.4
Thomashow, M.F.5
-
24
-
-
33748941620
-
Significance of inducible defense-related proteins in infected plants
-
van Loon LC, Rep M, Pieterse CM (2006) Significance of inducible defense-related proteins in infected plants. Annu Rev Phytopathol 44:135-162.
-
(2006)
Annu Rev Phytopathol
, vol.44
, pp. 135-162
-
-
van Loon, L.C.1
Rep, M.2
Pieterse, C.M.3
-
25
-
-
33645105776
-
Gene regulation during cold acclimation in plants
-
Chinnusamy V, Zhu J, Zhu J-K (2006) Gene regulation during cold acclimation in plants. Physiol Plant 126:52-61.
-
(2006)
Physiol Plant
, vol.126
, pp. 52-61
-
-
Chinnusamy, V.1
Zhu, J.2
Zhu, J.-K.3
-
26
-
-
0034192756
-
A core SMRT corepressor complex containing HDAC3 and TBL1, a WD40-repeat protein linked to deafness
-
Guenther MG, et al. (2000) A core SMRT corepressor complex containing HDAC3 and TBL1, a WD40-repeat protein linked to deafness. Genes Dev 14:1048-1057.
-
(2000)
Genes Dev
, vol.14
, pp. 1048-1057
-
-
Guenther, M.G.1
-
27
-
-
0036211850
-
The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2
-
Zhang J, Kalkum M, Chait BT, Roeder RG (2002) The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2. Mol Cell 9:611-623.
-
(2002)
Mol Cell
, vol.9
, pp. 611-623
-
-
Zhang, J.1
Kalkum, M.2
Chait, B.T.3
Roeder, R.G.4
-
28
-
-
1342264315
-
A corepressor/coactivator exchange complex required for transcriptional activation by nuclear receptors and other regulated transcription factors
-
Perissi V, Aggarwal A, Glass CK, Rose DW, Rosenfeld MG (2004) A corepressor/coactivator exchange complex required for transcriptional activation by nuclear receptors and other regulated transcription factors. Cell 116:511-526.
-
(2004)
Cell
, vol.116
, pp. 511-526
-
-
Perissi, V.1
Aggarwal, A.2
Glass, C.K.3
Rose, D.W.4
Rosenfeld, M.G.5
-
29
-
-
0344405718
-
Purification and functional characterization of the human N-CoR complex: The roles of HDAC3, TBL1 and TBLR1
-
Yoon HG, et al. (2003) Purification and functional characterization of the human N-CoR complex: The roles of HDAC3, TBL1 and TBLR1. EMBO J 22:1336-1346.
-
(2003)
EMBO J
, vol.22
, pp. 1336-1346
-
-
Yoon, H.G.1
-
30
-
-
0035542787
-
AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin
-
Tiwari SB, Wang XJ, Hagen G, Guilfoyle TJ (2001) AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin. Plant Cell 13:2809-2822.
-
(2001)
Plant Cell
, vol.13
, pp. 2809-2822
-
-
Tiwari, S.B.1
Wang, X.J.2
Hagen, G.3
Guilfoyle, T.J.4
-
31
-
-
9144272787
-
The WD-repeat protein superfamily in Arabidopsis: Conservation and divergence in structure and function
-
van Nocker S, Ludwig P (2003) The WD-repeat protein superfamily in Arabidopsis: Conservation and divergence in structure and function. BMC Genomics 4:50-60.
-
(2003)
BMC Genomics
, vol.4
, pp. 50-60
-
-
van Nocker, S.1
Ludwig, P.2
-
32
-
-
0034254857
-
NuRD and SIN3 histone deacetylase complexes in development
-
Ahringer J (2000) NuRD and SIN3 histone deacetylase complexes in development. Trends Genet 16:351-356.
-
(2000)
Trends Genet
, vol.16
, pp. 351-356
-
-
Ahringer, J.1
-
33
-
-
0034663815
-
Both corepressor proteins SMRT and N-CoR exist in large protein complexes containing HDAC3
-
Li J, et al. (2000) Both corepressor proteins SMRT and N-CoR exist in large protein complexes containing HDAC3. EMBO J 19:4342-4350.
-
(2000)
EMBO J
, vol.19
, pp. 4342-4350
-
-
Li, J.1
-
34
-
-
0242417589
-
Disruption mutations of ADA2b and GCN5 transcriptional adaptor genes dramatically affect Arabidopsis growth, development, and gene expression
-
Vlachonasios KE, Thomashow MF, Triezenberg SJ (2003) Disruption mutations of ADA2b and GCN5 transcriptional adaptor genes dramatically affect Arabidopsis growth, development, and gene expression. Plant Cell 15:626-638.
-
(2003)
Plant Cell
, vol.15
, pp. 626-638
-
-
Vlachonasios, K.E.1
Thomashow, M.F.2
Triezenberg, S.J.3
-
35
-
-
33749234963
-
The Arabidopsis thaliana vernalization response requires a polycomb-like protein complex that also includes VERNALIZATION INSENSITIVE 3
-
Wood CC, et al. (2006) The Arabidopsis thaliana vernalization response requires a polycomb-like protein complex that also includes VERNALIZATION INSENSITIVE 3. Proc Natl Acad Sci USA 103:14631-14636.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 14631-14636
-
-
Wood, C.C.1
-
36
-
-
33748324641
-
Transgeneration memory of stress in plants
-
Molinier J, Ries G, Zipfel C, Hohn B (2006) Transgeneration memory of stress in plants. Nature 442:1046-1049.
-
(2006)
Nature
, vol.442
, pp. 1046-1049
-
-
Molinier, J.1
Ries, G.2
Zipfel, C.3
Hohn, B.4
-
37
-
-
0035654544
-
Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis
-
Xiong L, et al. (2001) Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis. Dev Cell 1:771-781.
-
(2001)
Dev Cell
, vol.1
, pp. 771-781
-
-
Xiong, L.1
-
38
-
-
0001373861
-
Changes in leaf ultrastructure and carbohydrates in Arabidopsis thaliana (Heynh) cv. Columbia during rapid cold acclimation
-
Ristic Z, Ashworth EN (1993) Changes in leaf ultrastructure and carbohydrates in Arabidopsis thaliana (Heynh) cv. Columbia during rapid cold acclimation. Protoplasma 172:111-123.
-
(1993)
Protoplasma
, vol.172
, pp. 111-123
-
-
Ristic, Z.1
Ashworth, E.N.2
-
39
-
-
0032125081
-
HOS1, a genetic locus involved in cold-responsive gene expression in Arabidopsis
-
Ishitani M, Xiong L, Lee H, Stevenson B, Zhu J-K (1998) HOS1, a genetic locus involved in cold-responsive gene expression in Arabidopsis. Plant Cell 9:1151-1161.
-
(1998)
Plant Cell
, vol.9
, pp. 1151-1161
-
-
Ishitani, M.1
Xiong, L.2
Lee, H.3
Stevenson, B.4
Zhu, J.-K.5
-
40
-
-
34447530924
-
An enhancer mutant of Arabidopsis salt overly sensitive 3 mediates both ion homeostasis and the oxidative stress response
-
Zhu J, et al. (2007) An enhancer mutant of Arabidopsis salt overly sensitive 3 mediates both ion homeostasis and the oxidative stress response. Mol Cel Biol 27:5214-5224.
-
(2007)
Mol Cel Biol
, vol.27
, pp. 5214-5224
-
-
Zhu, J.1
-
41
-
-
0034724178
-
Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency
-
Cutler SR, Ehrhardt DW, Griffitts JS, Somerville CR (2000) Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency. Proc Natl Acad Sci USA 97:3718-3723.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 3718-3723
-
-
Cutler, S.R.1
Ehrhardt, D.W.2
Griffitts, J.S.3
Somerville, C.R.4
-
42
-
-
33845866061
-
The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis
-
Zhu J, Kapoor A, Sridhar VV, Agius F, Zhu JK (2007) The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis. Curr Biol 17:54-59.
-
(2007)
Curr Biol
, vol.17
, pp. 54-59
-
-
Zhu, J.1
Kapoor, A.2
Sridhar, V.V.3
Agius, F.4
Zhu, J.K.5
-
43
-
-
0034724180
-
The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3
-
Halfter U, Ishitani M, Zhu J-K (2000) The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3. Proc Natl Acad Sci USA 97:3735-3740.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 3735-3740
-
-
Halfter, U.1
Ishitani, M.2
Zhu, J.-K.3
-
45
-
-
0037143444
-
Interplay between Two Epigenetic Marks: DNA Methylation and Histone H3 Lysine 9 Methylation
-
Johnson L, Cao X, Jacobsen S (2002) Interplay between Two Epigenetic Marks: DNA Methylation and Histone H3 Lysine 9 Methylation. Curr Biol 12:1360-1367.
-
(2002)
Curr Biol
, vol.12
, pp. 1360-1367
-
-
Johnson, L.1
Cao, X.2
Jacobsen, S.3
-
46
-
-
0025464674
-
Analysis of leaky viral translation termination codons in vivo by transient expression of improved beta-glucuronidase vectors
-
Skuzeski JM, Nichols LM, Gesteland RF (1990) Analysis of leaky viral translation termination codons in vivo by transient expression of improved beta-glucuronidase vectors. Plant Mol Biol 15:65-79.
-
(1990)
Plant Mol Biol
, vol.15
, pp. 65-79
-
-
Skuzeski, J.M.1
Nichols, L.M.2
Gesteland, R.F.3
-
47
-
-
19944431555
-
Bax-induced cell death of Arabidopsis is meditated through reactive oxygen-dependent and -independent processes
-
Baek D, et al. (2004) Bax-induced cell death of Arabidopsis is meditated through reactive oxygen-dependent and -independent processes. Plant Mol Biol 56:15-27.
-
(2004)
Plant Mol Biol
, vol.56
, pp. 15-27
-
-
Baek, D.1
-
48
-
-
0342444416
-
GUS fusions: Beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants
-
Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: Beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6:3901-3907.
-
(1987)
EMBO J
, vol.6
, pp. 3901-3907
-
-
Jefferson, R.A.1
Kavanagh, T.A.2
Bevan, M.W.3
-
49
-
-
13544256637
-
Direct interaction of a divergent CaM isoform and the transcription factor, MYB2, enhances salt tolerance in Arabidopsis
-
Yoo JH, et al. (2005) Direct interaction of a divergent CaM isoform and the transcription factor, MYB2, enhances salt tolerance in Arabidopsis. J Biol Chem 280:3697-3706.
-
(2005)
J Biol Chem
, vol.280
, pp. 3697-3706
-
-
Yoo, J.H.1
|