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Volumn 39, Issue 5, 2012, Pages 5851-5857

Gene expression profiling of sinapis alba leaves under drought stress and rewatering growth conditions with illumina deep sequencing

Author keywords

Drought stress; Drought tolerance genes; Gene expression; Illumina sequencing; Sinapis alba

Indexed keywords

MESSENGER RNA; WATER;

EID: 84863771812     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-011-1395-9     Document Type: Article
Times cited : (20)

References (29)
  • 1
    • 36549033175 scopus 로고
    • The role of physiology in crop improvement
    • Staples RC, Kuhr RJ (edsr Plenum Press, New York
    • Kramer PJ (1980) The role of physiology in crop improvement. In: Staples RC, Kuhr RJ (eds) Linking research to crop production. Plenum Press, New York, pp 51-62
    • (1980) Linking Research to Crop Production , pp. 51-62
    • Kramer, P.J.1
  • 2
    • 48249153326 scopus 로고    scopus 로고
    • Coping mechanisms for crop plants in drought-prone environments
    • doi: 10.1093/aob/mcn018
    • Neumann PM (2008) Coping mechanisms for crop plants in drought-prone environments. Ann Bot 101(7):901-907. doi: 10.1093/aob/mcn018
    • (2008) Ann Bot , vol.101 , Issue.7 , pp. 901-907
    • Neumann, P.M.1
  • 3
    • 57749115921 scopus 로고    scopus 로고
    • Dolichol biosynthesis and its effects on the unfolded protein response and abiotic stress resistance in Arabidopsis
    • doi:10.1105/tpc.108.061150
    • Zhang H, Ohyama K, Boudet J, Chen Z, Yang J, Zhang M, Muranaka T, Maurel C, Zhu JK, Gong Z (2008) Dolichol biosynthesis and its effects on the unfolded protein response and abiotic stress resistance in Arabidopsis. Plant Cell 20:1879-1898. doi:10.1105/tpc.108.061150
    • (2008) Plant Cell , vol.20 , pp. 1879-1898
    • Zhang, H.1    Ohyama, K.2    Boudet, J.3    Chen, Z.4    Yang, J.5    Zhang, M.6    Muranaka, T.7    Maurel, C.8    Zhu, J.K.9    Gong, Z.10
  • 4
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • doi:10.1038/35048692
    • Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815. doi:10.1038/35048692
    • (2000) Nature , vol.408 , pp. 796-815
    • Genome Initiative, A.1
  • 7
    • 0035107803 scopus 로고    scopus 로고
    • Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses using full-length cDNA microarray
    • doi:10.1105/tpc.13.1.61
    • Seki M, Narusaka M, Abe H, Kasuga M, Yamaguchi-Shinozaki K, Carninci P, Hayashizaki Y, Shinozaki K (2001) Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses using full-length cDNA microarray. Plant Cell 13:61-72. doi:10.1105/tpc.13.1.61
    • (2001) Plant Cell , vol.13 , pp. 61-72
    • Seki, M.1    Narusaka, M.2    Abe, H.3    Kasuga, M.4    Yamaguchi-Shinozaki, K.5    Carninci, P.6    Hayashizaki, Y.7    Shinozaki, K.8
  • 9
    • 33745944196 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses
    • doi: 10.1146/annurev.arplant.57.032905.105444
    • Yamaguchi-Shinozaki K, Shinozaki K (2006) Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu Rev Plant Biol 57:781-803. doi: 10.1146/annurev.arplant.57.032905.105444
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 781-803
    • Yamaguchi-Shinozaki, K.1    Shinozaki, K.2
  • 10
    • 33745454533 scopus 로고    scopus 로고
    • Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis
    • doi: 10.1104/pp.105.070508
    • Wong CE, Li Y, Labbe A, Guevara D, Nuin P, Whitty B, Diaz C, Golding GB, Gray GR, Weretilnyk EA, Griffith M, Moffatt BA (2006) Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis. Plant Physiol 140:1437-1450. doi: 10.1104/pp.105.070508
    • (2006) Plant Physiol , vol.140 , pp. 1437-1450
    • Wong, C.E.1    Li, Y.2    Labbe, A.3    Guevara, D.4    Nuin, P.5    Whitty, B.6    Diaz, C.7    Golding, G.B.8    Gray, G.R.9    Weretilnyk, E.A.10    Griffith, M.11    Moffatt, B.A.12
  • 12
    • 0030890527 scopus 로고    scopus 로고
    • Intergeneric hybridization between Sinapis alba and Brassica napus
    • Brown J, Brown AP, Davis JB, Erickson D (1997) Intergeneric hybridization between Sinapis alba and Brassica napus. Euphytica 93:163-168
    • (1997) Euphytica , vol.93 , pp. 163-168
    • Brown, J.1    Brown, A.P.2    Davis, J.B.3    Erickson, D.4
  • 13
    • 0036909761 scopus 로고    scopus 로고
    • Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
    • doi:10.1104/pp.008532
    • Kreps JA, Wu Y, Chang HS, Zhu T, Wang X, Harper JF (2002) Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol 130:2129-2141. doi:10.1104/pp.008532
    • (2002) Plant Physiol , vol.130 , pp. 2129-2141
    • Kreps, J.A.1    Wu, Y.2    Chang, H.S.3    Zhu, T.4    Wang, X.5    Harper, J.F.6
  • 14
    • 9144230726 scopus 로고    scopus 로고
    • Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses
    • doi:10.1104/pp.103.025742
    • Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol 133:1755-1767. doi:10.1104/pp.103.025742
    • (2003) Plant Physiol , vol.133 , pp. 1755-1767
    • Rabbani, M.A.1    Maruyama, K.2    Abe, H.3    Ma, K.4    Katsura, K.5    Ito, Y.6    Yoshiwara, K.7    Seki, M.8    Shinozaki, K.9    Yamaguchi-Shinozaki, K.10
  • 16
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • doi:10.1101/gr.079558.108
    • Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18:1509-1517. doi:10.1101/gr.079558.108
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 18
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • doi:10.1101/gr.078212.108
    • Li H, Ruan J, Durbin R (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18(11):1851-1858. doi:10.1101/gr.078212.108
    • (2008) Genome Res , vol.18 , Issue.11 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 19
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • doi:10.1101/ gr.7.10.986
    • Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7(10):986-995. doi:10.1101/ gr.7.10.986
    • (1997) Genome Res , vol.7 , Issue.10 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 22
    • 0032766739 scopus 로고    scopus 로고
    • Plant responses to drought, from ABA signal transduction events to the action of the induced protein
    • Campalans A, Messeguer R, Goday A, Pages M (1999) Plant responses to drought, from ABA signal transduction events to the action of the induced protein. Plant Physiol Biochem37(5):327-340
    • (1999) Plant Physiol Biochem37 , vol.5 , pp. 327-340
    • Campalans, A.1    Messeguer, R.2    Goday, A.3    Pages, M.4
  • 24
    • 0033738988 scopus 로고    scopus 로고
    • Genetic analysis of plant salt tolerance using Arabidopsis
    • doi:10.1104/pp.124.3.941
    • Zhu JK (2000) Genetic analysis of plant salt tolerance using Arabidopsis. Plant Physiol 124(3):941-948. doi:10.1104/pp.124.3.941
    • (2000) Plant Physiol , vol.124 , Issue.3 , pp. 941-948
    • Zhu, J.K.1
  • 26
    • 0034254676 scopus 로고    scopus 로고
    • The dawn of plant salt tolerance genetics
    • doi: 10.1016/S1360-1385(00)01692-7
    • Hasegawa PM, Bressan RA, Pardo JM (2000) The dawn of plant salt tolerance genetics. Trends Plant Sci 5(8):317-319. doi: 10.1016/S1360-1385(00)01692-7
    • (2000) Trends Plant Sci , vol.5 , Issue.8 , pp. 317-319
    • Hasegawa, P.M.1    Bressan, R.A.2    Pardo, J.M.3
  • 28
    • 64749084488 scopus 로고    scopus 로고
    • An approach to transcriptome analysis of non-model organisms using short-read sequences
    • doi:10.1142/9781848163 3240001
    • Collins LJ, Biggs PJ, Voelckel C, Joly S (2008) An approach to transcriptome analysis of non-model organisms using short-read sequences. Genome Inform 21:3-14. doi:10.1142/9781848163 3240001
    • (2008) Genome Inform , vol.21 , pp. 3-14
    • Collins, L.J.1    Biggs, P.J.2    Voelckel, C.3    Joly, S.4
  • 29
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • doi:10.1111/j.1365-294X.2008.03666.x
    • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH (2008) Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol Ecol 17:1636-1647. doi:10.1111/j.1365-294X.2008. 03666.x
    • (2008) Mol Ecol , vol.17 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4    Crawford, D.L.5    Hanski, I.6    Marden, J.H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.