Transcriptome Analysis and Discovery of Genes Involved in Immune Pathways from Hepatopancreas of Microbial Challenged Mitten Crab Eriocheir sinensis

PLoS ONE

Volumn 8, Issue 7, 2013, Pages

  Li, Xihong ^a,b   Cui, Zhaoxia ^a   Liu, Yuan ^a   Song, Chengwen ^a,b   Shi, Guohui ^a,b  

^a INSTITUTE OF OCEANOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

JANUS KINASE; MITOGEN ACTIVATED PROTEIN KINASE; STAT PROTEIN; TOLL LIKE RECEPTOR;

ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; CRAB; DNA LIBRARY; ERIOCHEIR SINENSIS; HEPATOPANCREAS; IMMUNE DEFICIENCY; IMMUNOGENETICS; INNATE IMMUNITY; MICROCOCCUS LUTEUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PICHIA PASTORIS; PROTEIN DATABASE; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION; TRANSCRIPTOMICS; VIBRIO ALGINOLYTICUS;

AMINO ACID SEQUENCE; ANIMALS; CRUSTACEA; DNA, COMPLEMENTARY; FEMALE; HEPATOPANCREAS; IMMUNE SYSTEM; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTOME;

EID: 84880398200     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068233     Document Type: Article

References (48)

1. Wang W, Gu Z, (2002) Rickettsia-like organism associated with tremor disease and mortality of the Chinese mitten crab Eriocheir sinensis. Diseases of Aquattic Organisms 48: 149-153.
2. Wang W, Zhu N, Gu Z, Du K, Xu Z, (2002) Study on the transmission of tremor disease (TD) in the Chinese mitten crab, Eriocheir sinensis (Crustacea: Decapoda). Journal of Invertebrate Pathology 81: 202-204.
3. Bonami JR, Zhang S, (2011) Viral diseases in commercially exploited crabs: a review. J Invertebr Pathol 106: 6-17.
4. Mu C, Zheng P, Zhao J, Wang L, Qiu L, et al. (2011) A novel type III crustin (CrusEs2) identified from Chinese mitten crab Eriocheir sinensis. Fish Shellfish Immunol 31: 142-147.
5. Li WW, Jin XK, He L, Jiang H, Gong YN, et al. (2010) Molecular cloning, characterization, expression and activity analysis of cathepsin L in Chinese mitten crab, Eriocheir sinensis. Fish Shellfish Immunol 29: 1010-1018.
6. Gai Y, Zhao J, Song L, Li C, Zheng P, et al. (2008) A prophenoloxidase from the Chinese mitten crab Eriocheir sinensis: Gene cloning, expression and activity analysis. Fish & Shellfish Immunology 24: 156-167.
7. Jin XK, Li WW, Cheng L, Li S, Guo XN, et al. (2012) Two novel short C-type lectin from Chinese mitten crab, Eriocheir sinensis, are induced in response to LPS challenged. Fish Shellfish Immunol 33: 1149-1158.
8. Wang L, Zhang Y, Wang L, Yang J, Zhou Z, et al. (2011) A new anti-lipopolysaccharide factor (EsALF-3) from Eriocheir sinensis with antimicrobial activity. African Journal of Biotechnology 10.
9. Garber M, Grabherr MG, Guttman M, Trapnell C, (2011) Computational methods for transcriptome annotation and quantification using RNA-seq. Nature Methods 8: 469-477.
10. He L, Wang Q, Jin X, Wang Y, Chen L, et al. (2012) Transcriptome profiling of testis during sexual maturation stages in Eriocheir sinensis using Illumina sequencing. PLoS One 7: e33735.
11. Ou J, Meng Q, Li Y, Xiu Y, Du J, et al. (2012) Identification and comparative analysis of the Eriocheir sinensis microRNA transcriptome response to Spiroplasma eriocheiris infection using a deep sequencing approach. Fish Shellfish Immunol 32: 345-352.
12. Djami-Tchatchou AT, Straker CJ, Allie F, (2012) 454 Sequencing for the Identification of Genes Differentially Expressed in Avocado Fruit (cv. Fuerte) Infected by Colletotrichum gloeosporioides. Journal of Phytopathology 160: 449-460.
13. Hsu JC, Chien TY, Hu CC, Chen MJ, Wu WJ, et al. (2012) Discovery of Genes Related to Insecticide Resistance in Bactrocera dorsalis by Functional Genomic Analysis of a De Novo Assembled Transcriptome. PLoS One 7: e40950.
14. Zhao X, Wang Q, Jiao Y, Huang R, Deng Y, et al. (2012) Identification of Genes Potentially Related to Biomineralization and Immunity by Transcriptome Analysis of Pearl Sac in Pearl Oyster Pinctada martensii. Mar Biotechnol (NY) 14: 730-739.
15. Gavery MR, Roberts SB, (2012) Characterizing short read sequencing for gene discovery and RNA-Seq analysis in Crassostrea gigas. Comp Biochem Physiol Part D Genomics Proteomics 7: 94-99.
16. Roux MM, Pain A, Klimpel KR, Dhar AK, (2002) The Lipopolysaccharide and β-1,3-Glucan Binding Protein Gene Is Upregulated in White Spot Virus-Infected Shrimp (Penaeus stylirostris). Journal of Virology 76: 7140-7149.
17. Ried C, Wahl C, Miethke T, Wellnhofer G, Landgraf C, et al. (1996) High Affinity Endotoxin-binding and Neutralizing Peptides Based on the Crystal Structure of Recombinant Limulus Anti-lipopolysaccharide Factor. Journal of Biological Chemsitry 271: 28120-28127.
18. Gross P, Bartlett T, Browdy C, Chapman R, Warr G, (2001) Immune gene discovery by expressed sequence tag analysis of hemocytes and hepatopancreas in the Pacific White Shrimp, Litopenaeus vannamei, and the Atlantic White Shrimp, L. setiferus. Developmental and Comparative Immunology 25: 565-577.
19. Jiang H, Cai YM, Chen LQ, Zhang XW, Hu SN, et al. (2009) Functional annotation and analysis of expressed sequence tags from the hepatopancreas of mitten crab (Eriocheir sinensis). Mar Biotechnol (NY) 11: 317-326.
20. Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29: 644-652.
21. Kisseleva T, Bhattacharya S, Braunstein J, Schindler C, (2002) Signaling through the JAK-STAT pathway, recent advances and future challenges. Gene 285: 1-24.
22. Jiang H, Yin Y, Zhang X, Hu S, Wang Q, (2009) Chasing relationships between nutrition and reproduction: A comparative transcriptome analysis of hepatopancreas and testis from Eriocheir sinensis. Comp Biochem Physiol Part D Genomics Proteomics 4: 227-234.
23. Morisato D, Anderson KV, (1995) Signaling pathways that establish the dorsalventral pattern of the Drosophila embryo. Annual review of genetics 29: 371-399.
24. Wang PH, Liang JP, Gu ZH, Wan DH, Weng SP, et al. (2012) Molecular cloning, characterization and expression analysis of two novel Tolls (LvToll2 and LvToll3) and three putative Spatzle-like Toll ligands (LvSpz1-3) from Litopenaeus vannamei. Dev Comp Immunol 36: 359-371.
25. Zhang S, Li C, Yan H, Qiu W, Chen Y, et al. (2012) Identification and Function of Myeloid Differentiation Factor 88 (MyD88) in Litopenaeus vannamei. PLoS One 7: e47038.
26. Wang PH, Gu ZH, Wan DH, Zhang MY, Weng SP, et al. (2011) The shrimp NF-kappaB pathway is activated by white spot syndrome virus (WSSV) 449 to facilitate the expression of WSSV069 (ie1), WSSV303 and WSSV371. PLoS One 6: e24773.
27. Wang PH, Wan DH, Gu ZH, Deng XX, Weng SP, et al. (2011) Litopenaeus vannamei tumor necrosis factor receptor-associated factor 6 (TRAF6) responds to Vibrio alginolyticus and white spot syndrome virus (WSSV) infection and activates antimicrobial peptide genes. Dev Comp Immunol 35: 105-114.
28. Lin Z, Qiao J, Zhang Y, Guo L, Huang H, et al. (2012) Cloning and characterisation of the SpToll gene from green mud crab, Scylla paramamosain. Dev Comp Immunol 37: 164-175.
29. Kawai T, Akira S, (2006) TLR signaling. Cell Death Differ 13: 816-825.
30. Akira S, Uematsu S, Takeuchi O, (2006) Pathogen Recognition and Innate Immunity. Cell 124: 783-801.
31. Valanne S, Wang JH, Ramet M, (2011) The Drosophila Toll signaling pathway. J Immunol 186: 649-656.
32. Takehana A, Yano T, Mita S, Kotani A, Oshima Y, et al. (2004) Peptidoglycan recognition protein (PGRP)-LE and PGRP-LC act synergistically in Drosophila immunity. European Molecular Biology Organization 23: 4690-4700.
33. Jin XK, Li WW, He L, Lu W, Chen LL, et al. (2011) Molecular cloning, characterization and expression analysis of two apoptosis genes, caspase and nm23, involved in the antibacterial response in Chinese mitten crab, Eriocheir sinensis. Fish Shellfish Immunol 30: 263-272.
34. Li F, Wang L, Zhang H, Zheng P, Zhao J, et al. (2010) Molecular cloning and expression of a Relish gene in Chinese mitten crab Eriocheir sinensis. Int J Immunogenet 37: 499-508.
35. Wang PH, Gu ZH, Huang XD, Liu BD, Deng XX, et al. (2009) An immune deficiency homolog from the white shrimp, Litopenaeus vannamei, activates antimicrobial peptide genes. Mol Immunol 46: 1897-1904.
36. Li F, Yan H, Wang D, Priya TA, Li S, et al. (2009) Identification of a novel relish homolog in Chinese shrimp Fenneropenaeus chinensis and its function in regulating the transcription of antimicrobial peptides. Dev Comp Immunol 33: 1093-1101.
37. Zhang Y, Zhao J, Zhang H, Gai Y, Wang L, et al. (2010) The involvement of suppressors of cytokine signaling 2 (SOCS2) in immune defense responses of Chinese mitten crab Eriocheir sinensis. Dev Comp Immunol 34: 42-48.
38. Jiang H, Ren F, Sun J, He L, Li W, et al. (2010) Molecular Cloning and Gene Expression Analysis of the Leptin Receptor in the Chinese Mitten Crab Eriocheir sinensis. PLoS One 5: e11175.
39. Harrison DA (2012) The Jak/STAT pathway. Cold Spring Harb Perspect Biol 4.
40. Mu Y, Ding F, Cui P, Ao J, Hu S, et al. (2010) Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection. BMC Genomics 11: 506.
41. Zhang F, Guo H, Zheng H, Zhou T, Zhou Y, et al. (2010) Massively parallel pyrosequencing-based transcriptome analyses of small brown planthopper (Laodelphax striatellus), a vector insect transmitting rice stripe virus (RSV). BMC Genomics 11: 303.
42. Sun C, Shao HL, Zhang XW, Zhao XF, Wang JX, (2011) Molecular cloning and expression analysis of signal transducer and activator of transcription (STAT) from the Chinese white shrimp Fenneropenaeus chinensis. Mol Biol Rep 38: 5313-5319.
43. Kisseleva T, Bhattacharya S, Braunstein J, Schindler C, (2002) Signaling through the JAK-STAT pathway, recent advances and future challenges. Gene 285: 1-24.
44. Chen WY, Ho KC, Leu JH, Liu KF, Wang HC, et al. (2008) WSSV infection activates STAT in shrimp. Dev Comp Immunol 32: 1142-1150.
45. Cheng CH, Chen GD, Yeh MS, Chu CY, Hsu YL, et al. (2010) Expression and characterization of the JAK kinase and STAT protein from brine shrimp, Artemia franciscana. Fish & Shellfish Immunology 28: 774-782.
46. Ma A, Wang Y, Zhang Z, Han K, (2010) MAPK signal transduction pathway and it's research advance in aquatic invertebrates. Chinese Bulletin of Life Sciences 22: 978-984.
47. Lin MC, Hui CF, Chen JY, Wu JL, (2012) The antimicrobial peptide, shrimp anti-lipopolysaccharide factor (SALF), inhibits proinflammatory cytokine expressions through the MAPK and NF-kappaB pathways in Trichomonas vaginalis adherent to HeLa cells. Peptides 38: 197-207.
48. Feld M, Dimant B, Delorenzi A, Coso O, Romano A, (2005) Phosphorylation of extra-nuclear ERK/MAPK is required for long-term memory consolidation in the crab Chasmagnathus. Behav Brain Res 158: 251-261.