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Volumn 14, Issue 1, 2013, Pages

De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa

Author keywords

Ammopiptanthus mongolicus; Cold acclimation; Illumina Solexa; Transcriptome

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 84880184527     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-488     Document Type: Article
Times cited : (89)

References (73)
  • 1
    • 84866456762 scopus 로고    scopus 로고
    • Miocene origin of the characteristic broad-leaved evergreen shrub Ammopiptanthus (Leguminosae) in the desert flora of eastern central Asia
    • Xie L, Yang Y. Miocene origin of the characteristic broad-leaved evergreen shrub Ammopiptanthus (Leguminosae) in the desert flora of eastern central Asia. Int J Plant Sci 2012, 173(8):944-955.
    • (2012) Int J Plant Sci , vol.173 , Issue.8 , pp. 944-955
    • Xie, L.1    Yang, Y.2
  • 2
    • 71049171632 scopus 로고    scopus 로고
    • Genetic structure and mating system of Ammopiptanthus mongolicus (Leguminosae), an endangered shrub in north-western China
    • Chen GQ, Crawford D, Huang HW, Ge XJ. Genetic structure and mating system of Ammopiptanthus mongolicus (Leguminosae), an endangered shrub in north-western China. Plant Spec Biol 2009, 24(3):179-188.
    • (2009) Plant Spec Biol , vol.24 , Issue.3 , pp. 179-188
    • Chen, G.Q.1    Crawford, D.2    Huang, H.W.3    Ge, X.J.4
  • 3
    • 15844404149 scopus 로고    scopus 로고
    • Anthropogenic Transformation of Desert Ecosystems in Mongolia
    • Berlin: Springer, Breckle SW, Veste M, Wucherer W
    • Rachkovskaya E. Anthropogenic Transformation of Desert Ecosystems in Mongolia. Sustainable Land Use in Deserts 2001, 275-280. Berlin: Springer, Breckle SW, Veste M, Wucherer W.
    • (2001) Sustainable Land Use in Deserts , pp. 275-280
    • Rachkovskaya, E.1
  • 4
    • 23244461428 scopus 로고    scopus 로고
    • Genetic diversity and geographic differentiation in endangered Ammopiptanthus (Leguminosae) populations in desert regions of northwest China as revealed by ISSR analysis
    • 10.1093/aob/mci089, 15701663
    • Ge XJ, Yu Y, Yuan YM, Huang HW, Yan C. Genetic diversity and geographic differentiation in endangered Ammopiptanthus (Leguminosae) populations in desert regions of northwest China as revealed by ISSR analysis. Ann Bot 2005, 95(5):843-851. 10.1093/aob/mci089, 15701663.
    • (2005) Ann Bot , vol.95 , Issue.5 , pp. 843-851
    • Ge, X.J.1    Yu, Y.2    Yuan, Y.M.3    Huang, H.W.4    Yan, C.5
  • 5
    • 33847172665 scopus 로고    scopus 로고
    • Extraordinary accumulations of antioxidants in Ammopiptanthus mongolicus (Leguminosae) and Tetraena mongolica (Zygophyllaceae) distributed in extremely stressful environments
    • Wang W, Chen J, Li J, Zhang Y, Shao Z, Kuai B. Extraordinary accumulations of antioxidants in Ammopiptanthus mongolicus (Leguminosae) and Tetraena mongolica (Zygophyllaceae) distributed in extremely stressful environments. Bot Stud 2007, 48(1):55-61.
    • (2007) Bot Stud , vol.48 , Issue.1 , pp. 55-61
    • Wang, W.1    Chen, J.2    Li, J.3    Zhang, Y.4    Shao, Z.5    Kuai, B.6
  • 6
    • 0036657214 scopus 로고    scopus 로고
    • The seasonal effects of water stress on Ammopiptanthus mongolicus in a desert environment
    • Xu S, An L, Feng H, Wang X, Li X. The seasonal effects of water stress on Ammopiptanthus mongolicus in a desert environment. J Arid Environ 2002, 51(3):437-447.
    • (2002) J Arid Environ , vol.51 , Issue.3 , pp. 437-447
    • Xu, S.1    An, L.2    Feng, H.3    Wang, X.4    Li, X.5
  • 7
    • 79952768877 scopus 로고    scopus 로고
    • Tobacco plants ectopically expressing the Ammopiptanthus mongolicus AmCBL1 gene display enhanced tolerance to multiple abiotic stresses
    • Chen JH, Sun Y, Sun F, Xia XL, Yin WL. Tobacco plants ectopically expressing the Ammopiptanthus mongolicus AmCBL1 gene display enhanced tolerance to multiple abiotic stresses. Plant Growth Regul 2011, 63(3):259-269.
    • (2011) Plant Growth Regul , vol.63 , Issue.3 , pp. 259-269
    • Chen, J.H.1    Sun, Y.2    Sun, F.3    Xia, X.L.4    Yin, W.L.5
  • 8
    • 77950098920 scopus 로고    scopus 로고
    • Heterologous expression of a Ammopiptanthus mongolicus late embryogenesis abundant protein gene (AmLEA) enhances Escherichia coli viability under cold and heat stress
    • Liu RL, Liu MQ, Liu J, Chen YZ, Chen YY, Lu CF. Heterologous expression of a Ammopiptanthus mongolicus late embryogenesis abundant protein gene (AmLEA) enhances Escherichia coli viability under cold and heat stress. Plant Growth Regul 2010, 60(2):163-168.
    • (2010) Plant Growth Regul , vol.60 , Issue.2 , pp. 163-168
    • Liu, R.L.1    Liu, M.Q.2    Liu, J.3    Chen, Y.Z.4    Chen, Y.Y.5    Lu, C.F.6
  • 9
    • 84865500404 scopus 로고    scopus 로고
    • Ectopic expression of an Ammopiptanthus mongolicus H+-pyrophosphatase gene enhances drought and salt tolerance in Arabidopsis
    • Wei Q, Hu P, Kuai BK. Ectopic expression of an Ammopiptanthus mongolicus H+-pyrophosphatase gene enhances drought and salt tolerance in Arabidopsis. Plant Cell Tiss Org 2012, 110(3):359-369.
    • (2012) Plant Cell Tiss Org , vol.110 , Issue.3 , pp. 359-369
    • Wei, Q.1    Hu, P.2    Kuai, B.K.3
  • 10
    • 79957490151 scopus 로고    scopus 로고
    • Cloning and characterization of an AtNHX2-like Na+/H + antiporter gene from Ammopiptanthus mongolicus (Leguminosae) and its ectopic expression enhanced drought and salt tolerance in Arabidopsis thaliana
    • Wei Q, Guo YJ, Cao HM, Kuai BK. Cloning and characterization of an AtNHX2-like Na+/H + antiporter gene from Ammopiptanthus mongolicus (Leguminosae) and its ectopic expression enhanced drought and salt tolerance in Arabidopsis thaliana. Plant Cell Tiss Org 2011, 105(3):309-316.
    • (2011) Plant Cell Tiss Org , vol.105 , Issue.3 , pp. 309-316
    • Wei, Q.1    Guo, Y.J.2    Cao, H.M.3    Kuai, B.K.4
  • 11
    • 33847231598 scopus 로고    scopus 로고
    • Characterization and function analysis of a cold-induced AmCIP gene encoding a dehydrin-like protein in Ammopiptanthus mongolicus
    • Liu MQ, Lu CF, Shen X, Yin WL. Characterization and function analysis of a cold-induced AmCIP gene encoding a dehydrin-like protein in Ammopiptanthus mongolicus. DNA Seq 2006, 17(5):342-349.
    • (2006) DNA Seq , vol.17 , Issue.5 , pp. 342-349
    • Liu, M.Q.1    Lu, C.F.2    Shen, X.3    Yin, W.L.4
  • 12
    • 33645100080 scopus 로고    scopus 로고
    • Arabidopsis transcription factors regulating cold acclimation
    • Van Buskirk HA, Thomashow MF. Arabidopsis transcription factors regulating cold acclimation. Physiol Plantarum 2006, 126(1):72-80.
    • (2006) Physiol Plantarum , vol.126 , Issue.1 , pp. 72-80
    • Van Buskirk, H.A.1    Thomashow, M.F.2
  • 13
    • 34447644628 scopus 로고    scopus 로고
    • An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice
    • 10.1186/1471-2164-8-175, 1925099, 17577400
    • Cheng C, Yun K-Y, Ressom HW, Mohanty B, Bajic VB, Jia Y, Yun SJ, Reyes BG DL. An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice. BMC Genomics 2007, 8:175. 10.1186/1471-2164-8-175, 1925099, 17577400.
    • (2007) BMC Genomics , vol.8 , pp. 175
    • Cheng, C.1    Yun, K.-Y.2    Ressom, H.W.3    Mohanty, B.4    Bajic, V.B.5    Jia, Y.6    Yun, S.J.7    Reyes, B.G.D.L.8
  • 14
    • 41049084068 scopus 로고    scopus 로고
    • Differential expression of wheat genes during cold acclimation
    • Christov NK, Yoneyama S, Shimamoto Y, Imai R. Differential expression of wheat genes during cold acclimation. Cytol Genet 2007, 41(3):142-150.
    • (2007) Cytol Genet , vol.41 , Issue.3 , pp. 142-150
    • Christov, N.K.1    Yoneyama, S.2    Shimamoto, Y.3    Imai, R.4
  • 15
    • 60549086103 scopus 로고    scopus 로고
    • Characterization of multiple cold induced genes from Ammopiptanthus mongolicus and functional analyses of gene AmEBP1
    • 10.1007/s11103-008-9434-1, 19067182
    • Cao PX, Song J, Zhou CJ, Weng ML, Liu J, Wang FX, Zhao F, Feng DQ, Wang B. Characterization of multiple cold induced genes from Ammopiptanthus mongolicus and functional analyses of gene AmEBP1. Plant Mol Biol 2009, 69(5):529-539. 10.1007/s11103-008-9434-1, 19067182.
    • (2009) Plant Mol Biol , vol.69 , Issue.5 , pp. 529-539
    • Cao, P.X.1    Song, J.2    Zhou, C.J.3    Weng, M.L.4    Liu, J.5    Wang, F.X.6    Zhao, F.7    Feng, D.Q.8    Wang, B.9
  • 16
    • 0032213180 scopus 로고    scopus 로고
    • Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression
    • 10.1046/j.1365-313x.1998.00310.x, 9881163
    • Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF. Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J 1998, 16(4):433-442. 10.1046/j.1365-313x.1998.00310.x, 9881163.
    • (1998) Plant J , vol.16 , Issue.4 , pp. 433-442
    • Gilmour, S.J.1    Zarka, D.G.2    Stockinger, E.J.3    Salazar, M.P.4    Houghton, J.M.5    Thomashow, M.F.6
  • 17
    • 70350218818 scopus 로고    scopus 로고
    • Applications of new sequencing technologies for transcriptome Analysis
    • Morozova O, Hirst M, Marra MA. Applications of new sequencing technologies for transcriptome Analysis. Annu Rev Genom Hum G 2009, 10:135-151.
    • (2009) Annu Rev Genom Hum G , vol.10 , pp. 135-151
    • Morozova, O.1    Hirst, M.2    Marra, M.A.3
  • 18
    • 77956107299 scopus 로고    scopus 로고
    • Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing
    • 10.1093/nar/gkq256, 2926611, 20392818
    • Wang B, Guo G, Wang C, Lin Y, Wang X, Zhao M, Guo Y, He M, Zhang Y, Pan L. Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing. Nucleic Acids Res 2010, 38(15):5075-5087. 10.1093/nar/gkq256, 2926611, 20392818.
    • (2010) Nucleic Acids Res , vol.38 , Issue.15 , pp. 5075-5087
    • Wang, B.1    Guo, G.2    Wang, C.3    Lin, Y.4    Wang, X.5    Zhao, M.6    Guo, Y.7    He, M.8    Zhang, Y.9    Pan, L.10
  • 20
    • 53649088131 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies in functional genomics
    • 10.1016/j.ygeno.2008.07.001, 18703132
    • Morozova O, Marra MA. Applications of next-generation sequencing technologies in functional genomics. Genomics 2008, 92(5):255-264. 10.1016/j.ygeno.2008.07.001, 18703132.
    • (2008) Genomics , vol.92 , Issue.5 , pp. 255-264
    • Morozova, O.1    Marra, M.A.2
  • 21
    • 79956098378 scopus 로고    scopus 로고
    • Genome-scale transcriptome analysis of the desert poplar, Populus euphratica
    • 10.1093/treephys/tpr015, 21427158
    • Qiu Q, Ma T, Hu Q, Liu B, Wu Y, Zhou H, Wang Q, Wang J, Liu J. Genome-scale transcriptome analysis of the desert poplar, Populus euphratica. Tree Physiol 2011, 31(4):452-461. 10.1093/treephys/tpr015, 21427158.
    • (2011) Tree Physiol , vol.31 , Issue.4 , pp. 452-461
    • Qiu, Q.1    Ma, T.2    Hu, Q.3    Liu, B.4    Wu, Y.5    Zhou, H.6    Wang, Q.7    Wang, J.8    Liu, J.9
  • 22
    • 84859501783 scopus 로고    scopus 로고
    • De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode
    • 10.1186/1471-2164-13-133, 3439707, 22494814
    • Xu DL, Long H, Liang JJ, Zhang J, Chen X, Li JL, Pan ZF, Deng GB, Yu MQ. De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode. BMC Genomics 2012, 13:133. 10.1186/1471-2164-13-133, 3439707, 22494814.
    • (2012) BMC Genomics , vol.13 , pp. 133
    • Xu, D.L.1    Long, H.2    Liang, J.J.3    Zhang, J.4    Chen, X.5    Li, J.L.6    Pan, Z.F.7    Deng, G.B.8    Yu, M.Q.9
  • 23
    • 64749090107 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
    • 10.1111/j.1467-7652.2008.00396.x, 19207216
    • Trick M, Long Y, Meng J, Bancroft I. Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J 2009, 7(4):334-346. 10.1111/j.1467-7652.2008.00396.x, 19207216.
    • (2009) Plant Biotechnol J , vol.7 , Issue.4 , pp. 334-346
    • Trick, M.1    Long, Y.2    Meng, J.3    Bancroft, I.4
  • 25
    • 84862825018 scopus 로고    scopus 로고
    • De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)
    • 10.1186/1471-2164-13-90, 3350410, 22409576
    • Zhang J, Liang S, Duan J, Wang J, Chen S, Cheng Z, Zhang Q, Liang X, Li Y. De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.). BMC Genomics 2012, 13:90. 10.1186/1471-2164-13-90, 3350410, 22409576.
    • (2012) BMC Genomics , vol.13 , pp. 90
    • Zhang, J.1    Liang, S.2    Duan, J.3    Wang, J.4    Chen, S.5    Cheng, Z.6    Zhang, Q.7    Liang, X.8    Li, Y.9
  • 26
    • 84859063337 scopus 로고    scopus 로고
    • De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments
    • 10.1186/1471-2164-13-126, 3378455, 22462805
    • Gahlan P, Singh HR, Shankar R, Sharma N, Kumari A, Chawla V, Ahuja PS, Kumar S. De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments. BMC Genomics 2012, 13:126. 10.1186/1471-2164-13-126, 3378455, 22462805.
    • (2012) BMC Genomics , vol.13 , pp. 126
    • Gahlan, P.1    Singh, H.R.2    Shankar, R.3    Sharma, N.4    Kumari, A.5    Chawla, V.6    Ahuja, P.S.7    Kumar, S.8
  • 28
    • 51249171246 scopus 로고
    • Nuclear DNA content of some important plant species
    • Arumuganathan K, Earle E. Nuclear DNA content of some important plant species. Plant Mol Biol Rep 1991, 9(3):208-218.
    • (1991) Plant Mol Biol Rep , vol.9 , Issue.3 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.2
  • 30
    • 0033498862 scopus 로고    scopus 로고
    • Plant cold acclimation: Freezing tolerance genes and Regulatory mechanisms
    • Thomashow MF. Plant cold acclimation: Freezing tolerance genes and Regulatory mechanisms. Ann Rev Plant Physiol Plant Mol Biol 1999, 50:571-599.
    • (1999) Ann Rev Plant Physiol Plant Mol Biol , vol.50 , pp. 571-599
    • Thomashow, M.F.1
  • 31
    • 0035144222 scopus 로고    scopus 로고
    • So what's new in the field of plant cold acclimation? Lots!
    • 10.1104/pp.125.1.89, 1539333, 11154304
    • Thomashow MF. So what's new in the field of plant cold acclimation? Lots!. Plant Physiol 2001, 125(1):89-93. 10.1104/pp.125.1.89, 1539333, 11154304.
    • (2001) Plant Physiol , vol.125 , Issue.1 , pp. 89-93
    • Thomashow, M.F.1
  • 32
    • 36148983028 scopus 로고    scopus 로고
    • Development and characterization of microsatellite markers for an endangered shrub, Ammopiptanthus mongolicus (Leguminosae) and cross-species amplification in Ammopiptanthus nanus
    • Chen GQ, Huang HW, Ge XJ. Development and characterization of microsatellite markers for an endangered shrub, Ammopiptanthus mongolicus (Leguminosae) and cross-species amplification in Ammopiptanthus nanus. Conserv Genet 2007, 8(6):1495-1497.
    • (2007) Conserv Genet , vol.8 , Issue.6 , pp. 1495-1497
    • Chen, G.Q.1    Huang, H.W.2    Ge, X.J.3
  • 33
    • 84862487435 scopus 로고    scopus 로고
    • De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicus
    • 10.1186/1471-2164-13-226, 3431222, 22681719
    • Zhou YJ, Gao F, Liu R, Feng JC, Li HJ. De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicus. BMC Genomics 2012, 13:226. 10.1186/1471-2164-13-226, 3431222, 22681719.
    • (2012) BMC Genomics , vol.13 , pp. 226
    • Zhou, Y.J.1    Gao, F.2    Liu, R.3    Feng, J.C.4    Li, H.J.5
  • 34
    • 0033827989 scopus 로고    scopus 로고
    • Cold comfort farm: the acclimation of plants to freezing temperatures
    • Xin Z. Cold comfort farm: the acclimation of plants to freezing temperatures. Plant Cell Environ 2001, 23(9):893-902.
    • (2001) Plant Cell Environ , vol.23 , Issue.9 , pp. 893-902
    • Xin, Z.1
  • 35
    • 0035107803 scopus 로고    scopus 로고
    • Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray
    • 102214, 11158529
    • Seki M, Narusaka M, Abe H, Kasuga M, Yamaguchi-Shinozaki K, Carninci P, Hayashizaki Y, Shinozaki K. Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 2001, 13(1):61-72. 102214, 11158529.
    • (2001) Plant Cell , vol.13 , Issue.1 , pp. 61-72
    • Seki, M.1    Narusaka, M.2    Abe, H.3    Kasuga, M.4    Yamaguchi-Shinozaki, K.5    Carninci, P.6    Hayashizaki, Y.7    Shinozaki, K.8
  • 36
    • 0036671216 scopus 로고    scopus 로고
    • Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
    • 10.1105/tpc.003483, 151458, 12172015
    • Fowler S, Thomashow MF. Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 2002, 14(8):1675-1690. 10.1105/tpc.003483, 151458, 12172015.
    • (2002) Plant Cell , vol.14 , Issue.8 , pp. 1675-1690
    • Fowler, S.1    Thomashow, M.F.2
  • 37
    • 0142134237 scopus 로고    scopus 로고
    • Mass spectrometric approach for identifying putative plasma membrane proteins of Arabidopsis leaves associated with cold acclimation
    • 10.1046/j.1365-313X.2003.01864.x, 14535880
    • Kawamura Y, Uemura M. Mass spectrometric approach for identifying putative plasma membrane proteins of Arabidopsis leaves associated with cold acclimation. Plant J 2003, 36(2):141-154. 10.1046/j.1365-313X.2003.01864.x, 14535880.
    • (2003) Plant J , vol.36 , Issue.2 , pp. 141-154
    • Kawamura, Y.1    Uemura, M.2
  • 38
    • 77957741120 scopus 로고    scopus 로고
    • Freezing tolerance in plants requires lipid remodeling at the outer chloroplast membrane
    • 10.1126/science.1191803, 20798281
    • Moellering ER, Muthan B, Benning C. Freezing tolerance in plants requires lipid remodeling at the outer chloroplast membrane. Science 2010, 330(6001):226-228. 10.1126/science.1191803, 20798281.
    • (2010) Science , vol.330 , Issue.6001 , pp. 226-228
    • Moellering, E.R.1    Muthan, B.2    Benning, C.3
  • 39
    • 84871980760 scopus 로고    scopus 로고
    • Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana
    • Degenkolbe T, Giavalisco P, Zuther E, Seiwert B, Hincha DK, Willmitzer L. Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana. Plant J 2012, 32(6):972-982.
    • (2012) Plant J , vol.32 , Issue.6 , pp. 972-982
    • Degenkolbe, T.1    Giavalisco, P.2    Zuther, E.3    Seiwert, B.4    Hincha, D.K.5    Willmitzer, L.6
  • 40
    • 0028676106 scopus 로고
    • Cloning of a temperature-regulated gene encoding a chloroplast omega-3 desaturase from Arabidopsis thaliana
    • 10.1104/pp.106.4.1615, 159705, 7846164
    • Gibson S, Arondel V, Iba K, Somerville C. Cloning of a temperature-regulated gene encoding a chloroplast omega-3 desaturase from Arabidopsis thaliana. Plant Physiol 1994, 106(4):1615-1621. 10.1104/pp.106.4.1615, 159705, 7846164.
    • (1994) Plant Physiol , vol.106 , Issue.4 , pp. 1615-1621
    • Gibson, S.1    Arondel, V.2    Iba, K.3    Somerville, C.4
  • 41
    • 33751327552 scopus 로고    scopus 로고
    • Roles of glycine betaine and proline in improving plant abiotic stress resistance
    • Ashraf M, Foolad MR. Roles of glycine betaine and proline in improving plant abiotic stress resistance. Environ Exp Bot 2007, 59(2):206-216.
    • (2007) Environ Exp Bot , vol.59 , Issue.2 , pp. 206-216
    • Ashraf, M.1    Foolad, M.R.2
  • 42
    • 37249055976 scopus 로고    scopus 로고
    • Duplicated P5CS genes of Arabidopsis play distinct roles in stress regulation and developmental control of proline biosynthesis
    • 10.1111/j.1365-313X.2007.03318.x, 17971042
    • Szekely G, Abraham E, Cseplo A, Rigo G, Zsigmond L, Csiszar J, Ayaydin F, Strizhov N, Jasik J, Schmelzer E, et al. Duplicated P5CS genes of Arabidopsis play distinct roles in stress regulation and developmental control of proline biosynthesis. Plant J 2008, 53(1):11-28. 10.1111/j.1365-313X.2007.03318.x, 17971042.
    • (2008) Plant J , vol.53 , Issue.1 , pp. 11-28
    • Szekely, G.1    Abraham, E.2    Cseplo, A.3    Rigo, G.4    Zsigmond, L.5    Csiszar, J.6    Ayaydin, F.7    Strizhov, N.8    Jasik, J.9    Schmelzer, E.10
  • 43
    • 53849114355 scopus 로고    scopus 로고
    • Proline accumulation in plants: a review
    • 10.1007/s00726-008-0061-6, 18379856
    • Verbruggen N, Hermans C. Proline accumulation in plants: a review. Amino Acids 2008, 35(4):753-759. 10.1007/s00726-008-0061-6, 18379856.
    • (2008) Amino Acids , vol.35 , Issue.4 , pp. 753-759
    • Verbruggen, N.1    Hermans, C.2
  • 44
    • 0242668363 scopus 로고    scopus 로고
    • Altering flux through the sucrose biosynthesis pathway in transgenic Arabidopsis thaliana modifies photosynthetic acclimation at low temperatures and the development of freezing tolerance
    • Strand A, Foyer CH, Gustafsson P, Gardestrom P, Hurry V. Altering flux through the sucrose biosynthesis pathway in transgenic Arabidopsis thaliana modifies photosynthetic acclimation at low temperatures and the development of freezing tolerance. Plant Cell Environ 2003, 26(4):523-535.
    • (2003) Plant Cell Environ , vol.26 , Issue.4 , pp. 523-535
    • Strand, A.1    Foyer, C.H.2    Gustafsson, P.3    Gardestrom, P.4    Hurry, V.5
  • 45
    • 34548460796 scopus 로고    scopus 로고
    • The continuing conundrum of the LEA proteins
    • 10.1007/s00114-007-0254-y, 17479232
    • Tunnacliffe A, Wise MJ. The continuing conundrum of the LEA proteins. Naturwissenschaften 2007, 94(10):791-812. 10.1007/s00114-007-0254-y, 17479232.
    • (2007) Naturwissenschaften , vol.94 , Issue.10 , pp. 791-812
    • Tunnacliffe, A.1    Wise, M.J.2
  • 46
    • 34249750031 scopus 로고    scopus 로고
    • Prediction of functions for two LEA proteins from mung bean
    • 10.6026/97320630001133, 1891666, 17597874
    • Rajesh S, Manickam A. Prediction of functions for two LEA proteins from mung bean. Bioinformation 2006, 1(4):133-138. 10.6026/97320630001133, 1891666, 17597874.
    • (2006) Bioinformation , vol.1 , Issue.4 , pp. 133-138
    • Rajesh, S.1    Manickam, A.2
  • 47
    • 33645103198 scopus 로고    scopus 로고
    • Reactive oxygen species and temperature stresses: a delicate balance between signaling and destruction
    • Suzuki N, Mittler R. Reactive oxygen species and temperature stresses: a delicate balance between signaling and destruction. Physiol Plantarum 2006, 126(1):45-51.
    • (2006) Physiol Plantarum , vol.126 , Issue.1 , pp. 45-51
    • Suzuki, N.1    Mittler, R.2
  • 48
    • 0344927978 scopus 로고    scopus 로고
    • Alteration of antioxidant enzyme gene expression during cold acclimation of near-isogenic wheat lines
    • Baek KH, Skinner DZ. Alteration of antioxidant enzyme gene expression during cold acclimation of near-isogenic wheat lines. Plant Sci 2003, 165(6):1221-1227.
    • (2003) Plant Sci , vol.165 , Issue.6 , pp. 1221-1227
    • Baek, K.H.1    Skinner, D.Z.2
  • 49
    • 84862790489 scopus 로고    scopus 로고
    • Reference gene selection for qPCR in Ammopiptanthus mongolicus under abiotic stresses and expression analysis of seven ROS-scavenging enzyme genes
    • 10.1007/s00299-012-1245-9, 22451089
    • Shi J, Liu M, Shi J, Zheng G, Wang Y, Wang J, Chen Y, Lu C, Yin W. Reference gene selection for qPCR in Ammopiptanthus mongolicus under abiotic stresses and expression analysis of seven ROS-scavenging enzyme genes. Plant Cell Rep 2012, 31(7):1245-1254. 10.1007/s00299-012-1245-9, 22451089.
    • (2012) Plant Cell Rep , vol.31 , Issue.7 , pp. 1245-1254
    • Shi, J.1    Liu, M.2    Shi, J.3    Zheng, G.4    Wang, Y.5    Wang, J.6    Chen, Y.7    Lu, C.8    Yin, W.9
  • 51
    • 0033624156 scopus 로고    scopus 로고
    • Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants
    • 10.1046/j.1365-313x.2000.00787.x, 10929125
    • Saijo Y, Hata S, Kyozuka J, Shimamoto K, Izui K. Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants. Plant J 2000, 23(3):319-327. 10.1046/j.1365-313x.2000.00787.x, 10929125.
    • (2000) Plant J , vol.23 , Issue.3 , pp. 319-327
    • Saijo, Y.1    Hata, S.2    Kyozuka, J.3    Shimamoto, K.4    Izui, K.5
  • 52
    • 1642564016 scopus 로고    scopus 로고
    • CDPK-mediated signalling pathways: specificity and cross-talk
    • Ludwig AA, Romeis T, Jones JDG. CDPK-mediated signalling pathways: specificity and cross-talk. J Exp Bot 2004, 55(395):181-188.
    • (2004) J Exp Bot , vol.55 , Issue.395 , pp. 181-188
    • Ludwig, A.A.1    Romeis, T.2    Jones, J.D.G.3
  • 53
    • 29544436438 scopus 로고    scopus 로고
    • Plant cold acclimation: The role of abscisic acid
    • Gusta LV, Trischuk R, Weiser CJ. Plant cold acclimation: The role of abscisic acid. J Plant Growth Regul 2005, 24(4):308-318.
    • (2005) J Plant Growth Regul , vol.24 , Issue.4 , pp. 308-318
    • Gusta, L.V.1    Trischuk, R.2    Weiser, C.J.3
  • 54
    • 77958585232 scopus 로고    scopus 로고
    • Transcription factors in plants and ABA dependent and independent abiotic stress signalling
    • Agarwal PK, Jha B. Transcription factors in plants and ABA dependent and independent abiotic stress signalling. Biol Plantarum 2010, 54(2):201-212.
    • (2010) Biol Plantarum , vol.54 , Issue.2 , pp. 201-212
    • Agarwal, P.K.1    Jha, B.2
  • 55
    • 66249133969 scopus 로고    scopus 로고
    • Regulators of PP2C phosphatase activity function as abscisic acid sensors
    • Ma Y, Szostkiewicz I, Korte A, Moes D, Yang Y, Christmann A, Grill E. Regulators of PP2C phosphatase activity function as abscisic acid sensors. Science 2009, 324(5930):1064-1068.
    • (2009) Science , vol.324 , Issue.5930 , pp. 1064-1068
    • Ma, Y.1    Szostkiewicz, I.2    Korte, A.3    Moes, D.4    Yang, Y.5    Christmann, A.6    Grill, E.7
  • 56
    • 0036953765 scopus 로고    scopus 로고
    • ABA-activated SnRK2 protein kinase is required for dehydration stress signaling in Arabidopsis
    • 10.1093/pcp/pcf188, 12514244
    • Yoshida R, Hobo T, Ichimura K, Mizoguchi T, Takahashi F, Aronso J, Ecker JR, Shinozaki K. ABA-activated SnRK2 protein kinase is required for dehydration stress signaling in Arabidopsis. Plant Cell Physiol 2002, 43(12):1473-1483. 10.1093/pcp/pcf188, 12514244.
    • (2002) Plant Cell Physiol , vol.43 , Issue.12 , pp. 1473-1483
    • Yoshida, R.1    Hobo, T.2    Ichimura, K.3    Mizoguchi, T.4    Takahashi, F.5    Aronso, J.6    Ecker, J.R.7    Shinozaki, K.8
  • 57
    • 32444442926 scopus 로고    scopus 로고
    • Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors
    • 10.1111/j.1365-313X.2005.02583.x, 16359387
    • Kobayashi Y, Murata M, Minami H, Yamamoto S, Kagaya Y, Hobo T, Yamamoto A, Hattori T. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J 2005, 44(6):939-949. 10.1111/j.1365-313X.2005.02583.x, 16359387.
    • (2005) Plant J , vol.44 , Issue.6 , pp. 939-949
    • Kobayashi, Y.1    Murata, M.2    Minami, H.3    Yamamoto, S.4    Kagaya, Y.5    Hobo, T.6    Yamamoto, A.7    Hattori, T.8
  • 58
    • 84860582927 scopus 로고    scopus 로고
    • Cooperative function of PLD delta and PLD alpha 1 in abscisic acid-induced stomatal closure in Arabidopsis
    • 10.1104/pp.112.195578, 3375977, 22392280
    • Uraji M, Katagiri T, Okuma E, Ye W, Hossain MA, Masuda C, Miura A, Nakamura Y, Mori IC, Shinozaki K, Murata Y. Cooperative function of PLD delta and PLD alpha 1 in abscisic acid-induced stomatal closure in Arabidopsis. Plant Physiol 2012, 159(1):450-460. 10.1104/pp.112.195578, 3375977, 22392280.
    • (2012) Plant Physiol , vol.159 , Issue.1 , pp. 450-460
    • Uraji, M.1    Katagiri, T.2    Okuma, E.3    Ye, W.4    Hossain, M.A.5    Masuda, C.6    Miura, A.7    Nakamura, Y.8    Mori, I.C.9    Shinozaki, K.10    Murata, Y.11
  • 59
    • 23044460008 scopus 로고    scopus 로고
    • Phosphatidic acid: a multifunctional stress signaling lipid in plants
    • 10.1016/j.tplants.2005.06.002, 16023886
    • Testerink C, Munnik T. Phosphatidic acid: a multifunctional stress signaling lipid in plants. Trends Plant Sci 2005, 10(8):368-375. 10.1016/j.tplants.2005.06.002, 16023886.
    • (2005) Trends Plant Sci , vol.10 , Issue.8 , pp. 368-375
    • Testerink, C.1    Munnik, T.2
  • 60
    • 0036779396 scopus 로고    scopus 로고
    • Transcription factors in plant defense and stress responses
    • 10.1016/S1369-5266(02)00289-3, 12183182
    • Singh K, Foley RC, Onate-Sanchez L. Transcription factors in plant defense and stress responses. Curr Opin Plant Biol 2002, 5(5):430-436. 10.1016/S1369-5266(02)00289-3, 12183182.
    • (2002) Curr Opin Plant Biol , vol.5 , Issue.5 , pp. 430-436
    • Singh, K.1    Foley, R.C.2    Onate-Sanchez, L.3
  • 61
    • 0020611575 scopus 로고
    • Rapid flow cytometric analysis of the cell cycle in intact plant tissues
    • 10.1126/science.220.4601.1049, 17754551
    • Galbraith DW, Harkins KR, Maddox JM, Ayres NM, Sharma DP, Firoozabady E. Rapid flow cytometric analysis of the cell cycle in intact plant tissues. Science 1983, 220(4601):1049-1051. 10.1126/science.220.4601.1049, 17754551.
    • (1983) Science , vol.220 , Issue.4601 , pp. 1049-1051
    • Galbraith, D.W.1    Harkins, K.R.2    Maddox, J.M.3    Ayres, N.M.4    Sharma, D.P.5    Firoozabady, E.6
  • 62
    • 51249169259 scopus 로고
    • A simple and efficient method for isolating RNA from pine trees
    • Chang S, Puryear J, Cairney J. A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep 1993, 11(2):113-116.
    • (1993) Plant Mol Biol Rep , vol.11 , Issue.2 , pp. 113-116
    • Chang, S.1    Puryear, J.2    Cairney, J.3
  • 64
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • 10.1093/bioinformatics/bti610, 16081474
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21(18):3674-3676. 10.1093/bioinformatics/bti610, 16081474.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 67
    • 0033290515 scopus 로고    scopus 로고
    • ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
    • Iseli C, Jongeneel CV, Bucher P. ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc Int Confn Intell Syst Mol Biol 1999, 7:138-148.
    • (1999) Proc Int Confn Intell Syst Mol Biol , vol.7 , pp. 138-148
    • Iseli, C.1    Jongeneel, C.V.2    Bucher, P.3
  • 68
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5(7):621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nat Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 69
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM. The significance of digital gene expression profiles. Genome Res 1997, 7(10):986-995.
    • (1997) Genome Res , vol.7 , Issue.10 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 70
    • 0037433040 scopus 로고    scopus 로고
    • Identifying differentially expressed genes using false discovery rate controlling procedures
    • 10.1093/bioinformatics/btf877, 12584122
    • Reiner A, Yekutieli D, Benjamini Y. Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 2003, 19(3):368-375. 10.1093/bioinformatics/btf877, 12584122.
    • (2003) Bioinformatics , vol.19 , Issue.3 , pp. 368-375
    • Reiner, A.1    Yekutieli, D.2    Benjamini, Y.3
  • 71
    • 77958596482 scopus 로고    scopus 로고
    • Whole genome wide expression profiles of Vitis amurensis grape responding to downy mildew by using Solexa sequencing technology
    • 10.1186/1471-2229-10-234, 3017854, 21029438
    • Wu J, Zhang Y, Zhang H, Huang H, Folta KM, Lu J. Whole genome wide expression profiles of Vitis amurensis grape responding to downy mildew by using Solexa sequencing technology. BMC Plant Biol 2010, 10:234. 10.1186/1471-2229-10-234, 3017854, 21029438.
    • (2010) BMC Plant Biol , vol.10 , pp. 234
    • Wu, J.1    Zhang, Y.2    Zhang, H.3    Huang, H.4    Folta, K.M.5    Lu, J.6
  • 72
    • 79959472680 scopus 로고    scopus 로고
    • The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing
    • 10.1371/journal.pone.0021220, 3120849, 21731678
    • da Hao C, Ge G, Xiao P, Zhang Y, Yang L. The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing. PLoS One 2011, 6(6):e21220. 10.1371/journal.pone.0021220, 3120849, 21731678.
    • (2011) PLoS One , vol.6 , Issue.6
    • da Hao, C.1    Ge, G.2    Xiao, P.3    Zhang, Y.4    Yang, L.5
  • 73
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • 10.1006/meth.2001.1262, 11846609
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25(4):402-408. 10.1006/meth.2001.1262, 11846609.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2


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