-
1
-
-
0031252084
-
Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression
-
Abe H., Yamaguchi-Shinozaki K., Urao T., Iwasaki T., Hosokawa D., and Shinozaki K. Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell. 9 (1997) 1859-1868
-
(1997)
Plant Cell.
, vol.9
, pp. 1859-1868
-
-
Abe, H.1
Yamaguchi-Shinozaki, K.2
Urao, T.3
Iwasaki, T.4
Hosokawa, D.5
Shinozaki, K.6
-
2
-
-
33846018056
-
A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance
-
Agarwal M., et al. A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J. Biol. Chem. 281 (2006) 37636-37645
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 37636-37645
-
-
Agarwal, M.1
-
3
-
-
33644839617
-
Salt stress signaling and mechanisms of plant salt tolerance
-
Chinnusamy V., Zhu J., and Zhu J.K. Salt stress signaling and mechanisms of plant salt tolerance. Genet. Eng. (NY) 27 (2006) 141-177
-
(2006)
Genet. Eng. (NY)
, vol.27
, pp. 141-177
-
-
Chinnusamy, V.1
Zhu, J.2
Zhu, J.K.3
-
4
-
-
0030920501
-
Protein folds in the all-beta and all-alpha classes
-
Chothia C., Hubbard T., Brenner S., Barns H., and Murzin A. Protein folds in the all-beta and all-alpha classes. Annu. Rev. Biophys. Biomol. Struct. 26 (1997) 597-627
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 597-627
-
-
Chothia, C.1
Hubbard, T.2
Brenner, S.3
Barns, H.4
Murzin, A.5
-
5
-
-
34249803574
-
Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis
-
Dai X., et al. Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis. Plant Physiol. 143 (2007) 1739-1751
-
(2007)
Plant Physiol.
, vol.143
, pp. 1739-1751
-
-
Dai, X.1
-
6
-
-
0037297787
-
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression
-
Dubouzet J.G., et al. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J. 33 (2003) 751-763
-
(2003)
Plant J.
, vol.33
, pp. 751-763
-
-
Dubouzet, J.G.1
-
7
-
-
0036205440
-
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family
-
Gu X., and Vander Velden K. DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family. Bioinformatics 18 (2002) 500-501
-
(2002)
Bioinformatics
, vol.18
, pp. 500-501
-
-
Gu, X.1
Vander Velden, K.2
-
8
-
-
18044398617
-
Loss of function of MULTICOPY SUPPRESSOR OF IRA 1 produces nonviable parthenogenetic embryos in Arabidopsis
-
Guitton A.E., and Berger F. Loss of function of MULTICOPY SUPPRESSOR OF IRA 1 produces nonviable parthenogenetic embryos in Arabidopsis. Curr. Biol. 15 (2005) 750-754
-
(2005)
Curr. Biol.
, vol.15
, pp. 750-754
-
-
Guitton, A.E.1
Berger, F.2
-
9
-
-
4143051590
-
Ancestral genome duplication in rice
-
Guyot R., and Keller B. Ancestral genome duplication in rice. Genome 47 (2004) 610-614
-
(2004)
Genome
, vol.47
, pp. 610-614
-
-
Guyot, R.1
Keller, B.2
-
10
-
-
34249321627
-
Diversification and adaptive evolution of putative sweet taste receptors in threespine stickleback
-
Hashiguchi Y., Furuta Y., Kawahara R., and Nishida M. Diversification and adaptive evolution of putative sweet taste receptors in threespine stickleback. Gene 296 (2007) 170-179
-
(2007)
Gene
, vol.296
, pp. 170-179
-
-
Hashiguchi, Y.1
Furuta, Y.2
Kawahara, R.3
Nishida, M.4
-
12
-
-
0033197636
-
ACGT-containing abscisic acid response element (ABRE) and coupling element 3 (CE3) are functionally equivalent
-
Hobo T., Asada M., Kowyama Y., and Hattori T. ACGT-containing abscisic acid response element (ABRE) and coupling element 3 (CE3) are functionally equivalent. Plant J. 19 (1999) 679-689
-
(1999)
Plant J.
, vol.19
, pp. 679-689
-
-
Hobo, T.1
Asada, M.2
Kowyama, Y.3
Hattori, T.4
-
13
-
-
0035863052
-
Identification of a structural motif that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1
-
Holm M., Hardtke C.S., Gaudet R., and Deng X.W. Identification of a structural motif that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1. EMBO J. 20 (2001) 118-127
-
(2001)
EMBO J.
, vol.20
, pp. 118-127
-
-
Holm, M.1
Hardtke, C.S.2
Gaudet, R.3
Deng, X.W.4
-
14
-
-
27844483473
-
Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid
-
Huang J., Wang J.F., Wang Q.H., and Zhang H.S. Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid. DNA Seq. 16 (2005) 130-136
-
(2005)
DNA Seq.
, vol.16
, pp. 130-136
-
-
Huang, J.1
Wang, J.F.2
Wang, Q.H.3
Zhang, H.S.4
-
15
-
-
37549065143
-
Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family
-
Huang J., Wang M.M., Jiang Y., Wang Q.H., Huang X., and Zhang H.S. Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family. Plant Sci. 174 (2008) 227-235
-
(2008)
Plant Sci.
, vol.174
, pp. 227-235
-
-
Huang, J.1
Wang, M.M.2
Jiang, Y.3
Wang, Q.H.4
Huang, X.5
Zhang, H.S.6
-
16
-
-
34247882520
-
A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance
-
Huang J., et al. A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance. Biochim. Biophy. Acta 1769 (2007) 220-227
-
(2007)
Biochim. Biophy. Acta
, vol.1769
, pp. 220-227
-
-
Huang, J.1
-
17
-
-
0345307147
-
Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress
-
Huang J., Zhang H., Wang J., and Yang J. Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress. Mol. Biol. Rep. 30 (2003) 223-227
-
(2003)
Mol. Biol. Rep.
, vol.30
, pp. 223-227
-
-
Huang, J.1
Zhang, H.2
Wang, J.3
Yang, J.4
-
18
-
-
34249819663
-
F-box proteins in rice: genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress
-
Jain M., et al. F-box proteins in rice: genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol. 143 (2007) 1467-1483
-
(2007)
Plant Physiol.
, vol.143
, pp. 1467-1483
-
-
Jain, M.1
-
19
-
-
0037624063
-
Collection, mapping, and annotation of over 28,000 cDNA clones from Japonica rice
-
Kikuchi S., Satoh K., Nagata T., et al. Collection, mapping, and annotation of over 28,000 cDNA clones from Japonica rice. Science 301 (2003) 376-379
-
(2003)
Science
, vol.301
, pp. 376-379
-
-
Kikuchi, S.1
Satoh, K.2
Nagata, T.3
-
20
-
-
33847638535
-
WD40 repeat protein, Arabidopsis Sec13 homolog 1, may play a role in vacuolar trafficking by controlling the membrane association of AtDRP2A
-
Lee M.H., Lee S.H., Kim H., Jin J.B., Kim D.H., and Hwang I.A. WD40 repeat protein, Arabidopsis Sec13 homolog 1, may play a role in vacuolar trafficking by controlling the membrane association of AtDRP2A. Mol. Cells 22 (2006) 210-219
-
(2006)
Mol. Cells
, vol.22
, pp. 210-219
-
-
Lee, M.H.1
Lee, S.H.2
Kim, H.3
Jin, J.B.4
Kim, D.H.5
Hwang, I.A.6
-
21
-
-
34547884302
-
Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice
-
Li M., Xu W., Yang W., Kong Z., and Xue Y. Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice. Plant Physiol. 144 (2007) 1797-1812
-
(2007)
Plant Physiol.
, vol.144
, pp. 1797-1812
-
-
Li, M.1
Xu, W.2
Yang, W.3
Kong, Z.4
Xue, Y.5
-
22
-
-
14644434896
-
Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley
-
Marè C., Mazzucotelli E., Crosatti C., Francia E., Stanca A.M., and Cattivelli L. Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley. Plant Mol. Biol. 55 (2004) 399-416
-
(2004)
Plant Mol. Biol.
, vol.55
, pp. 399-416
-
-
Marè, C.1
Mazzucotelli, E.2
Crosatti, C.3
Francia, E.4
Stanca, A.M.5
Cattivelli, L.6
-
23
-
-
0034459468
-
Upstream open reading frames as regulators of mRNA translation
-
Morris D.R., and Geballe A.P. Upstream open reading frames as regulators of mRNA translation. Mol. Cell Biol. 20 (2000) 8635-8642
-
(2000)
Mol. Cell Biol.
, vol.20
, pp. 8635-8642
-
-
Morris, D.R.1
Geballe, A.P.2
-
24
-
-
0034016129
-
Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression
-
Nakashima K., et al. Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression. Plant Mol. Biol. 42 (2000) 657-665
-
(2000)
Plant Mol. Biol.
, vol.42
, pp. 657-665
-
-
Nakashima, K.1
-
25
-
-
0028076764
-
The ancient regulatory-protein family of WD-repeat proteins
-
Neer E.J., Schmidt C.J., Nambudripad R., and Smith T.F. The ancient regulatory-protein family of WD-repeat proteins. Nature 371 (1994) 297-300
-
(1994)
Nature
, vol.371
, pp. 297-300
-
-
Neer, E.J.1
Schmidt, C.J.2
Nambudripad, R.3
Smith, T.F.4
-
26
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and application to the HIV-1 envelop gene
-
Nielsen R., and Yang Z. Likelihood models for detecting positively selected amino acid sites and application to the HIV-1 envelop gene. Genetics 148 (1998) 929-936
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
27
-
-
33645973556
-
The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning
-
Nishimura T., Wada T., Yamamoto K.T., and Okada K. The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning. Plant Cell 17 (2005) 2940-2953
-
(2005)
Plant Cell
, vol.17
, pp. 2940-2953
-
-
Nishimura, T.1
Wada, T.2
Yamamoto, K.T.3
Okada, K.4
-
29
-
-
33846101405
-
The TIGR Rice Genome Annotation Resource: improvements andnew features
-
Ouyang S., et al. The TIGR Rice Genome Annotation Resource: improvements andnew features. Nucleic Acids Res. 35 (2007) D883-D887
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Ouyang, S.1
-
30
-
-
0025413441
-
Genomic nucleotide sequence of four rice (Oryza sativa) actin genes
-
Reece K.S., Mcelroy D., and Wu R. Genomic nucleotide sequence of four rice (Oryza sativa) actin genes. Plant Mol. Biol. 14 (1990) 621-624
-
(1990)
Plant Mol. Biol.
, vol.14
, pp. 621-624
-
-
Reece, K.S.1
Mcelroy, D.2
Wu, R.3
-
31
-
-
13744249154
-
Arabidopsis Cys2/His2-type zinc finger proteins function as transcription repressors under drought, cold and high-salinity stress conditions
-
Sakamoto H., et al. Arabidopsis Cys2/His2-type zinc finger proteins function as transcription repressors under drought, cold and high-salinity stress conditions. Plant Physiol. 136 (2004) 2734-2746
-
(2004)
Plant Physiol.
, vol.136
, pp. 2734-2746
-
-
Sakamoto, H.1
-
32
-
-
27744538542
-
SLOW WALKER1, essential for gametogenesis in Arabidopsis, encodes a WD40 protein involved in 18S ribosomal RNA biogenesis
-
Shi D.Q., Liu J., Xiang Y.H., Ye D., Sundaresan V., and Yang W.C. SLOW WALKER1, essential for gametogenesis in Arabidopsis, encodes a WD40 protein involved in 18S ribosomal RNA biogenesis. Plant Cell 17 (2005) 2340-2354
-
(2005)
Plant Cell
, vol.17
, pp. 2340-2354
-
-
Shi, D.Q.1
Liu, J.2
Xiang, Y.H.3
Ye, D.4
Sundaresan, V.5
Yang, W.C.6
-
34
-
-
0030034646
-
Crystal structure of a G-protein beta gamma diner at 2.1 Å resolution
-
Sondek J., Bohm A., Lambright D.G., Hamm H.E., and Sigler P.B. Crystal structure of a G-protein beta gamma diner at 2.1 Å resolution. Nature 379 (1996) 369-374
-
(1996)
Nature
, vol.379
, pp. 369-374
-
-
Sondek, J.1
Bohm, A.2
Lambright, D.G.3
Hamm, H.E.4
Sigler, P.B.5
-
35
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
36
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
37
-
-
0027692524
-
An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence
-
Urao T., Yamaguchi-Shinozaki K., Urao S., and Shinozaki K. An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell 5 (1993) 1529-1539
-
(1993)
Plant Cell
, vol.5
, pp. 1529-1539
-
-
Urao, T.1
Yamaguchi-Shinozaki, K.2
Urao, S.3
Shinozaki, K.4
-
39
-
-
9144272787
-
The WD-repeat protein superfamily in Arabidopsis: conservation and divergence in structure and function
-
van Nocker S., and Ludwig P. The WD-repeat protein superfamily in Arabidopsis: conservation and divergence in structure and function. BMC Genomics 4 (2003) 50
-
(2003)
BMC Genomics
, vol.4
, pp. 50
-
-
van Nocker, S.1
Ludwig, P.2
-
40
-
-
0033165574
-
The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein
-
Walker A.R., et al. The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein. Plant Cell 11 (1999) 1337-1350
-
(1999)
Plant Cell
, vol.11
, pp. 1337-1350
-
-
Walker, A.R.1
-
41
-
-
35949004478
-
Mechanical stress induces biotic and abiotic stress responses via a novel cis-element
-
Walley J.W., et al. Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. PLoS Genet 3 (2007) e172
-
(2007)
PLoS Genet
, vol.3
-
-
Walley, J.W.1
-
42
-
-
14244250895
-
Duplication and DNA segmental loss in the rice genome: implications for diploidization
-
Wang X., Shi X., Hao B., Ge S., and Luo J. Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol. 165 (2005) 937-946
-
(2005)
New Phytol.
, vol.165
, pp. 937-946
-
-
Wang, X.1
Shi, X.2
Hao, B.3
Ge, S.4
Luo, J.5
-
43
-
-
0024712231
-
Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data
-
Wolfe K.H., Gouy M., Yang Y.W., Sharp P.M., and Li W.H. Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Nat. Acad. Sci. USA 86 (1989) 6201-6205
-
(1989)
Proc. Nat. Acad. Sci. USA
, vol.86
, pp. 6201-6205
-
-
Wolfe, K.H.1
Gouy, M.2
Yang, Y.W.3
Sharp, P.M.4
Li, W.H.5
-
44
-
-
40849119615
-
Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)
-
Xu D.Q., et al. Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.). FEBS Lett. 582 (2008) 1037-1043
-
(2008)
FEBS Lett.
, vol.582
, pp. 1037-1043
-
-
Xu, D.Q.1
-
45
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. CABIOS 13 (1997) 555-556
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
46
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
Yang Z., and Nielsen R. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19 (2002) 908-917
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 908-917
-
-
Yang, Z.1
Nielsen, R.2
-
47
-
-
0034097381
-
Codon substitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z., Nielsen R., Goldman N., and Pederson A.-M.K. Codon substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155 (2000) 431-449
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pederson, A.-M.K.4
-
48
-
-
52949095067
-
Genetic analysis of salt tolerance in japonica rice landrace Jiucaiqing from Taihu lake region in China
-
Yao M.Z., Wang J.F., Chen H.Y., Yang Q.L., Zhou G.A., and Zhang H.S. Genetic analysis of salt tolerance in japonica rice landrace Jiucaiqing from Taihu lake region in China. Chin. J. Rice Sci. 18 (2004) 503-506
-
(2004)
Chin. J. Rice Sci.
, vol.18
, pp. 503-506
-
-
Yao, M.Z.1
Wang, J.F.2
Chen, H.Y.3
Yang, Q.L.4
Zhou, G.A.5
Zhang, H.S.6
-
49
-
-
0035929589
-
The plant zinc finger protein ZPT2-2 has a unique mode of DNA interaction
-
Yoshioka K., Fukushima S., Yamazaki T., Yoshida M., and Takatsuji H. The plant zinc finger protein ZPT2-2 has a unique mode of DNA interaction. J. Biol. Chem. 276 (2001) 35802-35807
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 35802-35807
-
-
Yoshioka, K.1
Fukushima, S.2
Yamazaki, T.3
Yoshida, M.4
Takatsuji, H.5
-
50
-
-
20144366003
-
The genomes of Oryza sativa: a history of duplications
-
Yu J., Wang J., Lin W., et al. The genomes of Oryza sativa: a history of duplications. Plos Biology 3 (2005) e38
-
(2005)
Plos Biology
, vol.3
-
-
Yu, J.1
Wang, J.2
Lin, W.3
-
51
-
-
0034914973
-
Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression
-
Yu D., Chen C., and Chen Z. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell 13 (2001) 1527-1540
-
(2001)
Plant Cell
, vol.13
, pp. 1527-1540
-
-
Yu, D.1
Chen, C.2
Chen, Z.3
-
52
-
-
0035213385
-
Plant salt tolerance
-
Zhu J.K. Plant salt tolerance. Trends Plant Sci. 6 (2001) 66-71
-
(2001)
Trends Plant Sci.
, vol.6
, pp. 66-71
-
-
Zhu, J.K.1
|