-
1
-
-
77953784538
-
Mimicry of molecular pretenders: the terminal structures of satellites associated with plant RNA viruses
-
Huang Y-W, Hu C-C, Lin N-S, Hsu Y-H, Mimicry of molecular pretenders: the terminal structures of satellites associated with plant RNA viruses. RNA Biol. 2010;7: 162–171. 20139733
-
(2010)
RNA Biol
, vol.7
, pp. 162-171
-
-
Huang, Y.-W.1
Hu, C.-C.2
Lin, N.-S.3
Hsu, Y.-H.4
-
2
-
-
67349093522
-
Evolution of geminiviruses and their satellites
-
Nawaz-ul-Rehman MS, Fauquet CM, Evolution of geminiviruses and their satellites. FEBS Lett. 2009;583: 1825–1832. doi: 10.1016/j.febslet.2009.05.045 19497325
-
(2009)
FEBS Lett
, vol.583
, pp. 1825-1832
-
-
Nawaz-ul-Rehman, M.S.1
Fauquet, C.M.2
-
3
-
-
4744355827
-
Plant virus satellite and defective interfering RNAs: new paradigms for a new century
-
Simon AE, Roossinck MJ, Havelda Z, Plant virus satellite and defective interfering RNAs: new paradigms for a new century. Annu Rev Phytopathol. 2004;42: 415–437. 15283672
-
(2004)
Annu Rev Phytopathol
, vol.42
, pp. 415-437
-
-
Simon, A.E.1
Roossinck, M.J.2
Havelda, Z.3
-
4
-
-
84870699257
-
Pirates of the Caudovirales
-
Christie GE, Dokland T, Pirates of the Caudovirales. Virology. 2012;434: 210–221. doi: 10.1016/j.virol.2012.10.028 23131350
-
(2012)
Virology
, vol.434
, pp. 210-221
-
-
Christie, G.E.1
Dokland, T.2
-
5
-
-
84867049470
-
Staphylococcal pathogenicity island interference with helper phage reproduction is a paradigm of molecular parasitism
-
Ram G, Chen J, Kumar K, Ross HF, Ubeda C, Damle PK, et al. Staphylococcal pathogenicity island interference with helper phage reproduction is a paradigm of molecular parasitism. Proc Natl Acad Sci USA. 2012;109: 16300–16305. doi: 10.1073/pnas.1204615109 22991467
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 16300-16305
-
-
Ram, G.1
Chen, J.2
Kumar, K.3
Ross, H.F.4
Ubeda, C.5
Damle, P.K.6
-
6
-
-
84920121428
-
Precisely modulated pathogenicity island interference with late phage gene transcription
-
Ram G, Chen J, Ross HF, Novick RP, Precisely modulated pathogenicity island interference with late phage gene transcription. Proc Natl Acad Sci USA. 2014;111: 14536–14541. doi: 10.1073/pnas.1406749111 25246539
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 14536-14541
-
-
Ram, G.1
Chen, J.2
Ross, H.F.3
Novick, R.P.4
-
7
-
-
0033542481
-
Marine viruses and their biogeochemical and ecological effects
-
Fuhrman JA, Marine viruses and their biogeochemical and ecological effects. Nature. 1999;399: 541–548. 10376593
-
(1999)
Nature
, vol.399
, pp. 541-548
-
-
Fuhrman, J.A.1
-
8
-
-
84886467818
-
Hepatitis delta virus: a peculiar virus
-
Alves C, Branco C, Cunha C, Hepatitis delta virus: a peculiar virus. Adv Virol. 2013;2013: 560105. doi: 10.1155/2013/560105 24198831
-
(2013)
Adv Virol
, vol.2013
, pp. 560105
-
-
Alves, C.1
Branco, C.2
Cunha, C.3
-
9
-
-
77956642462
-
Adaptation of Staphylococcus aureus to ruminant and equine hosts involves SaPI-carried variants of von Willebrand factor-binding protein
-
Viana D, Blanco J, Tormo-Más MÁ, Selva L, Guinane CM, Baselga R, et al. Adaptation of Staphylococcus aureus to ruminant and equine hosts involves SaPI-carried variants of von Willebrand factor-binding protein. Mol Microbiol. 2010;77: 1583–1594. 20860091
-
(2010)
Mol Microbiol
, vol.77
, pp. 1583-1594
-
-
Viana, D.1
Blanco, J.2
Tormo-Más, M.Á3
Selva, L.4
Guinane, C.M.5
Baselga, R.6
-
10
-
-
77953478153
-
The phage-related chromosomal islands of Gram-positive bacteria
-
Novick RP, Christie GE, Penadés JR, The phage-related chromosomal islands of Gram-positive bacteria. Nat Rev Microbiol. 2010;8: 541–551. doi: 10.1038/nrmicro2393 20634809
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 541-551
-
-
Novick, R.P.1
Christie, G.E.2
Penadés, J.R.3
-
11
-
-
78049303152
-
Satellite phage TLCφ enables toxigenic conversion by CTX phage through dif site alteration
-
Hassan F, Kamruzzaman M, Mekalanos JJ, Faruque SM, Satellite phage TLCφ enables toxigenic conversion by CTX phage through dif site alteration. Nature. 2010;467: 982–985. doi: 10.1038/nature09469 20944629
-
(2010)
Nature
, vol.467
, pp. 982-985
-
-
Hassan, F.1
Kamruzzaman, M.2
Mekalanos, J.J.3
Faruque, S.M.4
-
12
-
-
0037325258
-
Filamentous phages linked to virulence of Vibrio cholerae
-
Davis BM, Waldor MK, Filamentous phages linked to virulence of Vibrio cholerae. Curr Opin Microbiol. 2003;6: 35–42. 12615217
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 35-42
-
-
Davis, B.M.1
Waldor, M.K.2
-
13
-
-
0037035385
-
Antagonistic coevolution between a bacterium and a bacteriophage
-
Buckling A, Rainey PB, Antagonistic coevolution between a bacterium and a bacteriophage. Proc Biol Sci. 2002;269: 931–936. 12028776
-
(2002)
Proc Biol Sci
, vol.269
, pp. 931-936
-
-
Buckling, A.1
Rainey, P.B.2
-
14
-
-
37749006455
-
SaPI mutations affecting replication and transfer and enabling autonomous replication in the absence of helper phage
-
Ubeda C, Maiques E, Barry P, Matthews A, Tormo MA, Lasa I, et al. SaPI mutations affecting replication and transfer and enabling autonomous replication in the absence of helper phage. Mol Microbiol. 2008;67: 493–503. 18086210
-
(2008)
Mol Microbiol
, vol.67
, pp. 493-503
-
-
Ubeda, C.1
Maiques, E.2
Barry, P.3
Matthews, A.4
Tormo, M.A.5
Lasa, I.6
-
15
-
-
77953478024
-
Moonlighting bacteriophage proteins derepress staphylococcal pathogenicity islands
-
Tormo-Más MÁ, Mir I, Shrestha A, Tallent SM, Campoy S, Lasa I, et al. Moonlighting bacteriophage proteins derepress staphylococcal pathogenicity islands. Nature. 2010;465: 779–782. doi: 10.1038/nature09065 20473284
-
(2010)
Nature
, vol.465
, pp. 779-782
-
-
Tormo-Más, M.Á1
Mir, I.2
Shrestha, A.3
Tallent, S.M.4
Campoy, S.5
Lasa, I.6
-
16
-
-
84876881787
-
Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism
-
Tormo-Más MÁ, Donderis J, García-Caballer M, Alt A, Mir-Sanchis I, Marina A, et al. Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism. Mol Cell. 2013;49: 947–958. doi: 10.1016/j.molcel.2012.12.013 23333307
-
(2013)
Mol Cell
, vol.49
, pp. 947-958
-
-
Tormo-Más, M.Á1
Donderis, J.2
García-Caballer, M.3
Alt, A.4
Mir-Sanchis, I.5
Marina, A.6
-
17
-
-
84908113335
-
Unravelling bacteriophage ϕ11 requirements for packaging and transfer of mobile genetic elements in Staphylococcus aureus
-
Quiles-Puchalt N, Martínez-Rubio R, Ram G, Lasa I, Penadés JR, Unravelling bacteriophage ϕ11 requirements for packaging and transfer of mobile genetic elements in Staphylococcus aureus. Mol Microbiol. 2014;91: 423–437. doi: 10.1111/mmi.12445 24283262
-
(2014)
Mol Microbiol
, vol.91
, pp. 423-437
-
-
Quiles-Puchalt, N.1
Martínez-Rubio, R.2
Ram, G.3
Lasa, I.4
Penadés, J.R.5
-
18
-
-
41549143962
-
Staphylococcus aureus pathogenicity island DNA is packaged in particles composed of phage proteins
-
Tormo MA, Ferrer MD, Maiques E, Ubeda C, Selva L, Lasa I, et al. Staphylococcus aureus pathogenicity island DNA is packaged in particles composed of phage proteins. J Bacteriol. 2008;190: 2434–2440. doi: 10.1128/JB.01349-07 18223072
-
(2008)
J Bacteriol
, vol.190
, pp. 2434-2440
-
-
Tormo, M.A.1
Ferrer, M.D.2
Maiques, E.3
Ubeda, C.4
Selva, L.5
Lasa, I.6
-
19
-
-
17044437752
-
The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages
-
Kwan T, Liu J, DuBow M, Gros P, Pelletier J, The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc Natl Acad Sci USA. 2005;102: 5174–5179. 15788529
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 5174-5179
-
-
Kwan, T.1
Liu, J.2
DuBow, M.3
Gros, P.4
Pelletier, J.5
-
20
-
-
0742323372
-
Antimicrobial drug discovery through bacteriophage genomics
-
Liu J, Dehbi M, Moeck G, Arhin F, Bauda P, Bergeron D, et al. Antimicrobial drug discovery through bacteriophage genomics. Nat Biotechnol. 2004;22: 185–191. 14716317
-
(2004)
Nat Biotechnol
, vol.22
, pp. 185-191
-
-
Liu, J.1
Dehbi, M.2
Moeck, G.3
Arhin, F.4
Bauda, P.5
Bergeron, D.6
-
21
-
-
84879663855
-
Enterococcus faecalis prophage dynamics and contributions to pathogenic traits
-
Matos RC, Lapaque N, Rigottier-Gois L, Debarbieux L, Meylheuc T, Gonzalez-Zorn B, et al. Enterococcus faecalis prophage dynamics and contributions to pathogenic traits. PLoS Genet. 2013;9: e1003539. doi: 10.1371/journal.pgen.1003539 23754962
-
(2013)
PLoS Genet
, vol.9
, pp. 1003539
-
-
Matos, R.C.1
Lapaque, N.2
Rigottier-Gois, L.3
Debarbieux, L.4
Meylheuc, T.5
Gonzalez-Zorn, B.6
-
22
-
-
84946586573
-
-
Martínez-Rubio R. PICs: una nueva familia de elementos móviles bacterianos en movimiento. PhD thesis. Universidad CEU Cardenal Herrera. 2013. http://catalogo.ceu.es/Record/uchceu589288?library=fuspceu.
-
-
-
-
23
-
-
0031822031
-
The gene for toxic shock toxin is carried by a family of mobile pathogenicity islands in Staphylococcus aureus
-
Lindsay JA, Ruzin A, Ross HF, Kurepina N, Novick RP, The gene for toxic shock toxin is carried by a family of mobile pathogenicity islands in Staphylococcus aureus. Mol Microbiol. 1998;29: 527–543. 9720870
-
(1998)
Mol Microbiol
, vol.29
, pp. 527-543
-
-
Lindsay, J.A.1
Ruzin, A.2
Ross, H.F.3
Kurepina, N.4
Novick, R.P.5
-
24
-
-
17644379901
-
Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci
-
Ubeda C, Maiques E, Knecht E, Lasa I, Novick RP, Penadés JR, Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci. Mol Microbiol. 2005;56: 836–844. 15819636
-
(2005)
Mol Microbiol
, vol.56
, pp. 836-844
-
-
Ubeda, C.1
Maiques, E.2
Knecht, E.3
Lasa, I.4
Novick, R.P.5
Penadés, J.R.6
-
25
-
-
34547642519
-
Role of staphylococcal phage and SaPI integrase in intra- and interspecies SaPI transfer
-
Maiques E, Ubeda C, Tormo MA, Ferrer MD, Lasa I, Novick RP, et al. Role of staphylococcal phage and SaPI integrase in intra- and interspecies SaPI transfer. J Bacteriol. 2007;189: 5608–5616. 17545290
-
(2007)
J Bacteriol
, vol.189
, pp. 5608-5616
-
-
Maiques, E.1
Ubeda, C.2
Tormo, M.A.3
Ferrer, M.D.4
Lasa, I.5
Novick, R.P.6
-
26
-
-
84883478089
-
A super-family of transcriptional activators regulates bacteriophage packaging and lysis in Gram-positive bacteria
-
Quiles-Puchalt N, Tormo-Más MÁ, Campoy S, Toledo-Arana A, Monedero V, Lasa I, et al. A super-family of transcriptional activators regulates bacteriophage packaging and lysis in Gram-positive bacteria. Nucleic Acids Res. 2013;41: 7260–7275. doi: 10.1093/nar/gkt508 23771138
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 7260-7275
-
-
Quiles-Puchalt, N.1
Tormo-Más, M.Á2
Campoy, S.3
Toledo-Arana, A.4
Monedero, V.5
Lasa, I.6
-
27
-
-
80051730215
-
RinA controls phage-mediated packaging and transfer of virulence genes in Gram-positive bacteria
-
Ferrer MD, Quiles-Puchalt N, Harwich MD, Tormo-Más MÁ, Campoy S, Barbé J, et al. RinA controls phage-mediated packaging and transfer of virulence genes in Gram-positive bacteria. Nucleic Acids Res. 2011;39: 5866–5878. doi: 10.1093/nar/gkr158 21450808
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5866-5878
-
-
Ferrer, M.D.1
Quiles-Puchalt, N.2
Harwich, M.D.3
Tormo-Más, M.Á4
Campoy, S.5
Barbé, J.6
-
28
-
-
84899088004
-
Staphylococcal pathogenicity island DNA packaging system involving cos-site packaging and phage-encoded HNH endonucleases
-
Quiles-Puchalt N, Carpena N, Alonso JC, Novick RP, Marina A, Penadés JR, Staphylococcal pathogenicity island DNA packaging system involving cos-site packaging and phage-encoded HNH endonucleases. Proc Natl Acad Sci USA. 2014;111: 6016–6021. doi: 10.1073/pnas.1320538111 24711396
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 6016-6021
-
-
Quiles-Puchalt, N.1
Carpena, N.2
Alonso, J.C.3
Novick, R.P.4
Marina, A.5
Penadés, J.R.6
-
29
-
-
84928582552
-
Intra- and inter-generic transfer of pathogenicity island-encoded virulence genes by cos phages
-
Chen J, Carpena N, Quiles-Puchalt N, Ram G, Novick RP, Penadés JR, Intra- and inter-generic transfer of pathogenicity island-encoded virulence genes by cos phages. ISME J. 2015;9: 1260–1263. doi: 10.1038/ismej.2014.187 25314321
-
(2015)
ISME J
, vol.9
, pp. 1260-1263
-
-
Chen, J.1
Carpena, N.2
Quiles-Puchalt, N.3
Ram, G.4
Novick, R.P.5
Penadés, J.R.6
-
30
-
-
84877028591
-
dUTPases, the unexplored family of signalling molecules
-
Penadés JR, Donderis J, García-Caballer M, Tormo-Más MÁ, Marina A, dUTPases, the unexplored family of signalling molecules. Curr Opin Microbiol. 2013;16: 163–170. doi: 10.1016/j.mib.2013.02.005 23541339
-
(2013)
Curr Opin Microbiol
, vol.16
, pp. 163-170
-
-
Penadés, J.R.1
Donderis, J.2
García-Caballer, M.3
Tormo-Más, M.Á4
Marina, A.5
-
31
-
-
84907818034
-
Higher resources decrease fluctuating selection during host-parasite coevolution
-
Lopez Pascua L, Hall AR, Best A, Morgan AD, Boots M, Buckling A, Higher resources decrease fluctuating selection during host-parasite coevolution. Ecol Lett. 2014;17: 1380–1388. doi: 10.1111/ele.12337 25167763
-
(2014)
Ecol Lett
, vol.17
, pp. 1380-1388
-
-
Lopez Pascua, L.1
Hall, A.R.2
Best, A.3
Morgan, A.D.4
Boots, M.5
Buckling, A.6
-
32
-
-
84935892046
-
Population mixing promotes arms race host-parasite coevolution
-
Gómez P, Ashby B, Buckling A, Population mixing promotes arms race host-parasite coevolution. Proc Biol Sci. 2015;282: 20142297. doi: 10.1098/rspb.2014.2297 25429018
-
(2015)
Proc Biol Sci
, vol.282
, pp. 20142297
-
-
Gómez, P.1
Ashby, B.2
Buckling, A.3
-
33
-
-
84866776612
-
Bacteria-virus coevolution
-
Buckling A, Brockhurst M, Bacteria-virus coevolution. Adv Exp Med Biol. 2012;751: 347–370. doi: 10.1007/978-1-4614-3567-9_16 22821466
-
(2012)
Adv Exp Med Biol
, vol.751
, pp. 347-370
-
-
Buckling, A.1
Brockhurst, M.2
-
34
-
-
34250648355
-
SaPI operon I is required for SaPI packaging and is controlled by LexA
-
Ubeda C, Maiques E, Tormo MA, Campoy S, Lasa I, Barbé J, et al. SaPI operon I is required for SaPI packaging and is controlled by LexA. Mol Microbiol. 2007;65: 41–50. 17581119
-
(2007)
Mol Microbiol
, vol.65
, pp. 41-50
-
-
Ubeda, C.1
Maiques, E.2
Tormo, M.A.3
Campoy, S.4
Lasa, I.5
Barbé, J.6
-
35
-
-
8144229488
-
Novel cassette-based shuttle vector system for gram-positive bacteria
-
Charpentier E, Anton AI, Barry P, Alfonso B, Fang Y, Novick RP, Novel cassette-based shuttle vector system for gram-positive bacteria. Appl Environ Microbiol. 2004;70: 6076–6085. 15466553
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 6076-6085
-
-
Charpentier, E.1
Anton, A.I.2
Barry, P.3
Alfonso, B.4
Fang, Y.5
Novick, R.P.6
-
36
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28: 2731–2739. doi: 10.1093/molbev/msr121 21546353
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
37
-
-
0033824415
-
RDP: detection of recombination amongst aligned sequences
-
Martin D, Rybicki E, RDP: detection of recombination amongst aligned sequences. Bioinformatics. 2000;16: 562–563. 10980155
-
(2000)
Bioinformatics
, vol.16
, pp. 562-563
-
-
Martin, D.1
Rybicki, E.2
-
38
-
-
33748770095
-
Automated phylogenetic detection of recombination using a genetic algorithm
-
Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SDW, Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol. 2006;23: 1891–1901. 16818476
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1891-1901
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.W.5
-
39
-
-
3543051830
-
Mauve: multiple alignment of conserved genomic sequence with rearrangements
-
Darling ACE, Mau B, Blattner FR, Perna NT, Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 2004;14: 1394–1403. 15231754
-
(2004)
Genome Res
, vol.14
, pp. 1394-1403
-
-
Darling, A.C.E.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
40
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D, Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006;23: 254–267. 16221896
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
41
-
-
84934436552
-
-
Bawono P, Heringa J, PRALINE: a versatile multiple sequence alignment toolkit. Methods Mol Biol. Totowa, NJ: Humana Press; 2014;1079: 245–262. doi: 10.1007/978-1-62703-646-7_16 24170407
-
(2014)
Methods Mol Biol
, vol.1079
, pp. 245-262
-
-
Bawono, P.1
Heringa, J.2
|