메뉴 건너뛰기




Volumn 4, Issue September2015, 2015, Pages

Molecular architecture of the yeast Mediator complex

Author keywords

[No Author keywords available]

Indexed keywords

HOLOENZYME; MEMBRANE PROTEIN; RNA POLYMERASE; CROSS LINKING REAGENT; MEDIATOR COMPLEX;

EID: 84946593198     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/eLife.08719     Document Type: Article
Times cited : (126)

References (64)
  • 1
    • 84855350995 scopus 로고    scopus 로고
    • Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast
    • Ansari SA, Ganapathi M, Benschop JJ, Holstege FC, Wade JT, Morse RH. 2012. Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast. The EMBO Journal 31:44-57. doi: 10.1038/emboj.2011.362.
    • (2012) The EMBO Journal , vol.31 , pp. 44-57
    • Ansari, S.A.1    Ganapathi, M.2    Benschop, J.J.3    Holstege, F.C.4    Wade, J.T.5    Morse, R.H.6
  • 2
    • 84880273878 scopus 로고    scopus 로고
    • Mechanisms of Mediator complex action in transcriptional activation
    • Ansari SA, Morse RH. 2013. Mechanisms of Mediator complex action in transcriptional activation. Cellular and Molecular Life Sciences 70:2743-2756. doi: 10.1007/s00018-013-1265-9.
    • (2013) Cellular and Molecular Life Sciences , vol.70 , pp. 2743-2756
    • Ansari, S.A.1    Morse, R.H.2
  • 4
    • 0038832859 scopus 로고    scopus 로고
    • Conserved structures of Mediator and RNA polymerase II holoenzyme
    • Asturias FJ, Jiang YW, Myers LC, Gustafsson CM, Kornberg RD. 1999. Conserved structures of Mediator and RNA polymerase II holoenzyme. Science 283:985-987. doi: 10.1126/science.283.5404.985.
    • (1999) Science , vol.283 , pp. 985-987
    • Asturias, F.J.1    Jiang, Y.W.2    Myers, L.C.3    Gustafsson, C.M.4    Kornberg, R.D.5
  • 5
    • 34247100676 scopus 로고    scopus 로고
    • Med19(Rox3) regulates Intermodule interactions in the Saccharomyces cerevisiae Mediator complex
    • Baidoobonso SM, Guidi BW, Myers LC. 2007. Med19(Rox3) regulates Intermodule interactions in the Saccharomyces cerevisiae Mediator complex. The Journal of Biological Chemistry 282:5551-5559. doi: 10.1074/ jbc.M609484200.
    • (2007) The Journal of Biological Chemistry , vol.282 , pp. 5551-5559
    • Baidoobonso, S.M.1    Guidi, B.W.2    Myers, L.C.3
  • 6
    • 24044470632 scopus 로고    scopus 로고
    • A conserved Mediator hinge revealed in the structure of the MED7.MED21 (Med7.Srb7) heterodimer
    • Baumli S, Hoeppner S, Cramer P. 2005. A conserved Mediator hinge revealed in the structure of the MED7.MED21 (Med7.Srb7) heterodimer. The Journal of Biological Chemistry 280:18171-18178. doi: 10.1074/jbc.M413466200.
    • (2005) The Journal of Biological Chemistry , vol.280 , pp. 18171-18178
    • Baumli, S.1    Hoeppner, S.2    Cramer, P.3
  • 9
    • 47249134314 scopus 로고    scopus 로고
    • Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional Mediator complex
    • Bourbon HM. 2008. Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional Mediator complex. Nucleic Acids Research 36:3993-4008. doi: 10.1093/nar/gkn349.
    • (2008) Nucleic Acids Research , vol.36 , pp. 3993-4008
    • Bourbon, H.M.1
  • 10
    • 0027918891 scopus 로고
    • Assessing the quality of solution nuclear magnetic resonance structures by complete cross-validation
    • Brunger AT, Clore GM, Gronenborn AM, Saffrich R, Nilges M. 1993. Assessing the quality of solution nuclear magnetic resonance structures by complete cross-validation. Science 261:328-331. doi: 10.1126/science.8332897.
    • (1993) Science , vol.261 , pp. 328-331
    • Brunger, A.T.1    Clore, G.M.2    Gronenborn, A.M.3    Saffrich, R.4    Nilges, M.5
  • 11
    • 84923319299 scopus 로고    scopus 로고
    • Reconstitution of active human core Mediator complex reveals a critical role of the MED14 subunit
    • Cevher MA, Shi Y, Li D, Chait BT, Malik S, Roeder RG. 2014. Reconstitution of active human core Mediator complex reveals a critical role of the MED14 subunit. Nature Structural & Molecular Biology 21:1028-1034. doi: 10.1038/nsmb.2914.
    • (2014) Nature Structural & Molecular Biology , vol.21 , pp. 1028-1034
    • Cevher, M.A.1    Shi, Y.2    Li, D.3    Chait, B.T.4    Malik, S.5    Roeder, R.G.6
  • 12
    • 0036297629 scopus 로고    scopus 로고
    • Multi-resolution contour-based fitting of macromolecular structures
    • Chacon P, Wriggers W. 2002. Multi-resolution contour-based fitting of macromolecular structures. Journal of Molecular Biology 317:375-384.
    • (2002) Journal of Molecular Biology , vol.317 , pp. 375-384
    • Chacon, P.1    Wriggers, W.2
  • 15
    • 0028036947 scopus 로고
    • Requirement for RGR1 and SIN4 in RME1-dependent repression in Saccharomyces cerevisiae
    • Covitz PA, Song W, Mitchell AP. 1994. Requirement for RGR1 and SIN4 in RME1-dependent repression in Saccharomyces cerevisiae. Genetics 138:577-586.
    • (1994) Genetics , vol.138 , pp. 577-586
    • Covitz, P.A.1    Song, W.2    Mitchell, A.P.3
  • 17
    • 0036671095 scopus 로고    scopus 로고
    • Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction
    • Davis JA, Takagi Y, Kornberg RD, Asturias FA. 2002. Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction. Molecular Cell 10:409-415. doi: 10.1016/S1097-2765(02)00598-1.
    • (2002) Molecular Cell , vol.10 , pp. 409-415
    • Davis, J.A.1    Takagi, Y.2    Kornberg, R.D.3    Asturias, F.A.4
  • 28
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: A case study using the Phyre server
    • Kelley LA, Sternberg MJ. 2009. Protein structure prediction on the Web: a case study using the Phyre server. Nature Protocols 4:363-371. doi: 10.1038/nprot.2009.2.
    • (2009) Nature Protocols , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.2
  • 29
    • 0028282551 scopus 로고
    • A multiprotein Mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II
    • Kim YJ, Bjorklund S, Li Y, Sayre MH, Kornberg RD. 1994. A multiprotein Mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77:599-608. doi: 10.1016/0092-8674 (94)90221-6.
    • (1994) Cell , vol.77 , pp. 599-608
    • Kim, Y.J.1    Bjorklund, S.2    Li, Y.3    Sayre, M.H.4    Kornberg, R.D.5
  • 30
    • 0032059891 scopus 로고    scopus 로고
    • An activator target in the RNA polymerase II holoenzyme
    • Koh SS, Ansari AZ, Ptashne M, Young RA. 1998. An activator target in the RNA polymerase II holoenzyme. Molecular Cell 1:895-904. doi: 10.1016/S1097-2765(00)80088-X.
    • (1998) Molecular Cell , vol.1 , pp. 895-904
    • Koh, S.S.1    Ansari, A.Z.2    Ptashne, M.3    Young, R.A.4
  • 31
    • 18844451820 scopus 로고    scopus 로고
    • Mediator and the mechanism of transcriptional activation
    • Kornberg RD. 2005. Mediator and the mechanism of transcriptional activation. Trends in Biochemical Sciences 30:235-239. doi: 10.1016/j.tibs.2005.03.011.
    • (2005) Trends in Biochemical Sciences , vol.30 , pp. 235-239
    • Kornberg, R.D.1
  • 38
    • 0000584521 scopus 로고    scopus 로고
    • Interplay of positive and negative regulators in transcription initiation by RNA polymerase II holoenzyme
    • Lee TI, Wyrick JJ, Koh SS, Jennings EG, Gadbois EL, Young RA. 1998. Interplay of positive and negative regulators in transcription initiation by RNA polymerase II holoenzyme. Molecular and Cellular Biology 18:4455-4462. doi: 10.1128/MCB.18.8.4455.
    • (1998) Molecular and Cellular Biology , vol.18 , pp. 4455-4462
    • Lee, T.I.1    Wyrick, J.J.2    Koh, S.S.3    Jennings, E.G.4    Gadbois, E.L.5    Young, R.A.6
  • 40
    • 84857966803 scopus 로고    scopus 로고
    • Expanding the chemical crosslinking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography
    • Leitner A, Reischl R, Walzthoeni T, Herzog F, Bohn S, Forster F, Aerbersold R. 2012. Expanding the chemical crosslinking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography. Molecular and Cellular Proteomics 11:M111.014126. doi: 10.1074/mcp.M111.014126.
    • (2012) Molecular and Cellular Proteomics , vol.11
    • Leitner, A.1    Reischl, R.2    Walzthoeni, T.3    Herzog, F.4    Bohn, S.5    Forster, F.6    Aerbersold, R.7
  • 47
    • 0034841844 scopus 로고    scopus 로고
    • The tandem affinity purification (TAP) method: A general procedure of protein complex purification
    • Puig O, Caspary F, Rigaut G, Rutz B, Bouveret E, Bragado-Nilsson E, Wilm M, Seraphin B. 2001. The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24:218-229. doi: 10. 1006/meth.2001.1183.
    • (2001) Methods , vol.24 , pp. 218-229
    • Puig, O.1    Caspary, F.2    Rigaut, G.3    Rutz, B.4    Bouveret, E.5    Bragado-Nilsson, E.6    Wilm, M.7    Seraphin, B.8
  • 48
    • 22144489530 scopus 로고    scopus 로고
    • Inferential structure determination
    • Rieping W, Habeck M, Nilges M. 2005. Inferential structure determination. Science 309:303-306. doi: 10.1126/ science.1110428.
    • (2005) Science , vol.309 , pp. 303-306
    • Rieping, W.1    Habeck, M.2    Nilges, M.3
  • 50
    • 84856497340 scopus 로고    scopus 로고
    • Putting the pieces together: Integrative modeling platform software for structure determination of macromolecular assemblies
    • Russel D, Lasker K, Webb B, Velazquez-Muriel J, Tjioe E, Schneidman-Duhovny D, Peterson B, Sali A. 2012. Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies. PLOS Biology 10:e1001244. doi: 10.1371/journal.pbio.1001244.
    • (2012) PLOS Biology , vol.10
    • Russel, D.1    Lasker, K.2    Webb, B.3    Velazquez-Muriel, J.4    Tjioe, E.5    Schneidman-Duhovny, D.6    Peterson, B.7    Sali, A.8
  • 51
    • 0025353713 scopus 로고
    • Structure and molecular analysis of RGR1, a gene required for glucose repression of Saccharomyces cerevisiae
    • Sakai A, Shimizu Y, Kondou S, Chibazakura T, Hishinuma F. 1990. Structure and molecular analysis of RGR1, a gene required for glucose repression of Saccharomyces cerevisiae. Molecular and Cellular Biology 10:4130-4138. doi: 10.1128/MCB.10.8.4130.
    • (1990) Molecular and Cellular Biology , vol.10 , pp. 4130-4138
    • Sakai, A.1    Shimizu, Y.2    Kondou, S.3    Chibazakura, T.4    Hishinuma, F.5
  • 54
    • 33749578940 scopus 로고    scopus 로고
    • Statistical potential for assessment and prediction of protein structures
    • Shen MY, Sali A. 2006. Statistical potential for assessment and prediction of protein structures. Protein Science 15:2507-2524. doi: 10.1110/ps.062416606.
    • (2006) Protein Science , vol.15 , pp. 2507-2524
    • Shen, M.Y.1    Sali, A.2
  • 56
    • 0028822470 scopus 로고
    • Suppressors of defective silencing in yeast: Effects on transcriptional repression at the HMR locus, cell growth and telomere structure
    • Sussel L, Vannier D, Shore D. 1995. Suppressors of defective silencing in yeast: effects on transcriptional repression at the HMR locus, cell growth and telomere structure. Genetics 141:873-888.
    • (1995) Genetics , vol.141 , pp. 873-888
    • Sussel, L.1    Vannier, D.2    Shore, D.3
  • 59
    • 84902186552 scopus 로고    scopus 로고
    • Subunit architecture and functional modular rearrangements of the transcriptional Mediator complex
    • Tsai KL, Tomomori-Sato C, Sato S, Conaway RC, Conaway JW, Asturias FJ. 2014. Subunit architecture and functional modular rearrangements of the transcriptional Mediator complex. Cell 157:1430-1444. doi: 10.1016/j. cell.2014.05.015.
    • (2014) Cell , vol.157 , pp. 1430-1444
    • Tsai, K.L.1    Tomomori-Sato, C.2    Sato, S.3    Conaway, R.C.4    Conaway, J.W.5    Asturias, F.J.6
  • 61
    • 23744490065 scopus 로고    scopus 로고
    • Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets
    • van de Peppel J, Kettelarij N, Van Bakel H, Kockelkorn TT, van leenen D, Holstege FC. 2005. Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets. Molecular Cell 19:511-522.
    • (2005) Molecular Cell , vol.19 , pp. 511-522
    • van de Peppel, J.1    Kettelarij, N.2    Van Bakel, H.3    Kockelkorn, T.T.4    van leenen, D.5    Holstege, F.C.6
  • 63
    • 84903816704 scopus 로고    scopus 로고
    • Redefining the modular organization of the core Mediator complex
    • Wang X, Sun Q, Ding Z, Ji J, Wang J, Kong X, Yang J, Cai G. 2014. Redefining the modular organization of the core Mediator complex. Cell Research 24:796-808. doi: 10.1038/cr.2014.64.
    • (2014) Cell Research , vol.24 , pp. 796-808
    • Wang, X.1    Sun, Q.2    Ding, Z.3    Ji, J.4    Wang, J.5    Kong, X.6    Yang, J.7    Cai, G.8
  • 64
    • 3242728442 scopus 로고    scopus 로고
    • A triad of subunits from the Gal11/tail domain of Srb Mediator is an in vivo target of transcriptional activator Gcn4p
    • Zhang F, Sumibcay L, Hinnebusch AG, Swanson MJ. 2004. A triad of subunits from the Gal11/tail domain of Srb Mediator is an in vivo target of transcriptional activator Gcn4p. Molecular and Cellular Biology 24:6871-6886. doi: 10.1128/MCB.24.15.6871-6886.2004.
    • (2004) Molecular and Cellular Biology , vol.24 , pp. 6871-6886
    • Zhang, F.1    Sumibcay, L.2    Hinnebusch, A.G.3    Swanson, M.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.